RNA–Protein interactions for RNA: ENST00000563759.1

LINC01960-201, Transcript of long intergenic non-protein coding RNA 1960, humanhuman

BASIC

Gene LINC01960, Length 1,884 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC01960-201ENST00000563759 SMIM20Q8N5G0 67 aa12.51□□□□□ -0.41
LINC01960-201ENST00000563759 ABCA13Q86UQ4 5058 aa12.5□□□□□ -0.41
LINC01960-201ENST00000563759 MT1HL1P0DM35 61 aa12.48□□□□□ -0.41
LINC01960-201ENST00000563759 C5orf47Q569G3 176 aa12.48□□□□□ -0.41
LINC01960-201ENST00000563759 PRR15Q8IV56 129 aa12.47□□□□□ -0.41
LINC01960-201ENST00000563759 FAM236AA0A1B0GUQ0 79 aa12.46□□□□□ -0.42
LINC01960-201ENST00000563759 FAM236BA0A1B0GV22 79 aa12.46□□□□□ -0.42
LINC01960-201ENST00000563759 DMBT1Q9UGM3 2413 aaPredicted RBP12.46□□□□□ -0.42
LINC01960-201ENST00000563759 A0A1B0GVX0 72 aa12.43□□□□□ -0.42
LINC01960-201ENST00000563759 IGHV6-1A0A0B4J1U7 121 aa12.42□□□□□ -0.42
LINC01960-201ENST00000563759 KRTAP29-1A8MX34 341 aaPredicted RBP12.4□□□□□ -0.42
LINC01960-201ENST00000563759 HCG22E2RYF7 251 aa12.38□□□□□ -0.43
LINC01960-201ENST00000563759 RETNLBQ9BQ08 111 aa12.38□□□□□ -0.43
LINC01960-201ENST00000563759 WFDC13Q8IUB5 93 aa12.35□□□□□ -0.43
LINC01960-201ENST00000563759 C8orf17Q9NRJ1 99 aa12.34□□□□□ -0.43
LINC01960-201ENST00000563759 MMP24-AS1A0A0U1RRL7 71 aa12.33□□□□□ -0.44
LINC01960-201ENST00000563759 CCDC179H3BU77 68 aa12.32□□□□□ -0.44
LINC01960-201ENST00000563759 CASC2Q6XLA1 102 aa12.31□□□□□ -0.44
LINC01960-201ENST00000563759 C8orf87E5RJ46 101 aa12.29□□□□□ -0.44
LINC01960-201ENST00000563759 J3QL48 77 aa12.29□□□□□ -0.44
LINC01960-201ENST00000563759 NOTCH2NLQ7Z3S9 236 aa12.29□□□□□ -0.44
LINC01960-201ENST00000563759 hDV103S1A0JD37 113 aa12.28□□□□□ -0.44
LINC01960-201ENST00000563759 ATOX1O00244 68 aa12.28□□□□□ -0.44
LINC01960-201ENST00000563759 LINC00313P59037 77 aa12.27□□□□□ -0.45
LINC01960-201ENST00000563759 RPS28P62857 69 aaKnown RBP12.25□□□□□ -0.45
LINC01960-201ENST00000563759 FP248Q71RG6 208 aaPredicted RBP12.21□□□□□ -0.46
LINC01960-201ENST00000563759 PCLOQ9Y6V0 5065 aa12.2□□□□□ -0.46
LINC01960-201ENST00000563759 TMEM254Q8TBM7 123 aa12.2□□□□□ -0.46
LINC01960-201ENST00000563759 MRPL34Q9BQ48 92 aaKnown RBP12.19□□□□□ -0.46
LINC01960-201ENST00000563759 C9orf92A6NGG3 77 aa12.14□□□□□ -0.47
LINC01960-201ENST00000563759 NDUFS5O43920 106 aa12.14□□□□□ -0.47
LINC01960-201ENST00000563759 IGLV7-46A0A075B6I9 117 aa12.12□□□□□ -0.47
LINC01960-201ENST00000563759 OCR1Q9BZK8 76 aa12.12□□□□□ -0.47
LINC01960-201ENST00000563759 PRR4Q16378 134 aa12.12□□□□□ -0.47
LINC01960-201ENST00000563759 KRTAP16-1A8MUX0 517 aa12.11□□□□□ -0.47
LINC01960-201ENST00000563759 TRAV7A0A075B6U4 112 aa12.1□□□□□ -0.47
LINC01960-201ENST00000563759 SERP2Q8N6R1 65 aa12.1□□□□□ -0.47
LINC01960-201ENST00000563759 UQCRQO14949 82 aa12.08□□□□□ -0.48
LINC01960-201ENST00000563759 Q8N9P0 234 aaPredicted RBP12.04□□□□□ -0.48
LINC01960-201ENST00000563759 TP53AIP1Q9HCN2 124 aa12.04□□□□□ -0.48
LINC01960-201ENST00000563759 COX7CP15954 63 aa12.02□□□□□ -0.48
LINC01960-201ENST00000563759 KRTAP13-3Q3SY46 172 aa12□□□□□ -0.49
LINC01960-201ENST00000563759 TRAV22A0A0B4J277 110 aa11.95□□□□□ -0.5
LINC01960-201ENST00000563759 C20orf166-AS1Q96NR2 134 aa11.94□□□□□ -0.5
LINC01960-201ENST00000563759 TPRXLQ17RH7 258 aa11.93□□□□□ -0.5
LINC01960-201ENST00000563759 TMEM258P61165 79 aa11.92□□□□□ -0.5
LINC01960-201ENST00000563759 A8MUU9 505 aa11.91□□□□□ -0.5
LINC01960-201ENST00000563759 H0Y9P7 68 aa11.91□□□□□ -0.5
LINC01960-201ENST00000563759 MP68P56378 58 aa11.91□□□□□ -0.5
LINC01960-201ENST00000563759 C20orf197Q8N268 126 aa11.91□□□□□ -0.5
LINC01960-201ENST00000563759 XP32Q5T750 250 aa11.89□□□□□ -0.51
LINC01960-201ENST00000563759 Q75L30 129 aa11.87□□□□□ -0.51
LINC01960-201ENST00000563759 Q5W150 140 aa11.87□□□□□ -0.51
LINC01960-201ENST00000563759 SNURFQ9Y675 71 aa11.84□□□□□ -0.51
LINC01960-201ENST00000563759 ZCCHC13Q8WW36 166 aaKnown RBP11.83□□□□□ -0.52
LINC01960-201ENST00000563759 LINC00208Q96KT6 92 aa11.83□□□□□ -0.52
LINC01960-201ENST00000563759 A0A0U1RQV1 116 aa11.8□□□□□ -0.52
LINC01960-201ENST00000563759 H3BPC8 53 aa11.8□□□□□ -0.52
LINC01960-201ENST00000563759 RPL37P61927 97 aaKnown RBP11.8□□□□□ -0.52
LINC01960-201ENST00000563759 KLKP1Q107X0 134 aa11.79□□□□□ -0.52
LINC01960-201ENST00000563759 C1orf64Q8NEQ6 169 aa11.79□□□□□ -0.52
LINC01960-201ENST00000563759 PRO0628Q9UI54 55 aa11.78□□□□□ -0.52
LINC01960-201ENST00000563759 HERC1Q15751 4861 aa11.78□□□□□ -0.52
LINC01960-201ENST00000563759 LPAP08519 4548 aa11.77□□□□□ -0.52
LINC01960-201ENST00000563759 ATP11AUNQ6ZP68 121 aa11.75□□□□□ -0.53
LINC01960-201ENST00000563759 CYSTM1Q9H1C7 97 aa11.73□□□□□ -0.53
LINC01960-201ENST00000563759 LOC101927531A0A1B0GV80 90 aa11.72□□□□□ -0.53
LINC01960-201ENST00000563759 IGKV2D-30A0A075B6S6 120 aa11.67□□□□□ -0.54
LINC01960-201ENST00000563759 IGKV2-30P06310 120 aa11.67□□□□□ -0.54
LINC01960-201ENST00000563759 LRP2P98164 4655 aa11.67□□□□□ -0.54
LINC01960-201ENST00000563759 NDUFC1O43677 76 aa11.65□□□□□ -0.54
LINC01960-201ENST00000563759 C4orf26Q17RF5 130 aa11.65□□□□□ -0.54
LINC01960-201ENST00000563759 CYP4F30PQ9H0H9 118 aa11.63□□□□□ -0.55
LINC01960-201ENST00000563759 C7orf65Q6ZTY9 151 aa11.62□□□□□ -0.55
LINC01960-201ENST00000563759 H7BZZ5 65 aa11.61□□□□□ -0.55
LINC01960-201ENST00000563759 PCOTHQ58A44 107 aa11.61□□□□□ -0.55
LINC01960-201ENST00000563759 HMCN2Q8NDA2 5059 aa11.61□□□□□ -0.55
LINC01960-201ENST00000563759 SERP1Q9Y6X1 66 aa11.55□□□□□ -0.56
LINC01960-201ENST00000563759 SPINK7P58062 85 aa11.54□□□□□ -0.56
LINC01960-201ENST00000563759 SEC61GP60059 68 aa11.53□□□□□ -0.56
LINC01960-201ENST00000563759 SEC61BP60468 96 aaKnown RBP11.53□□□□□ -0.56
LINC01960-201ENST00000563759 V9GYY9 64 aa11.51□□□□□ -0.57
LINC01960-201ENST00000563759 SMIM26A0A096LP01 95 aa11.46□□□□□ -0.58
LINC01960-201ENST00000563759 HRES1P13985 223 aa11.45□□□□□ -0.58
LINC01960-201ENST00000563759 FAM236DA0A1B0GTK5 79 aa11.44□□□□□ -0.58
LINC01960-201ENST00000563759 FAM236CP0DP71 79 aa11.44□□□□□ -0.58
LINC01960-201ENST00000563759 SPANXA2-OT1Q8N9U9 137 aa11.42□□□□□ -0.58
LINC01960-201ENST00000563759 ATP5EP56381 51 aaPredicted RBP11.39□□□□□ -0.59
LINC01960-201ENST00000563759 MUC17Q685J3 4493 aa11.34□□□□□ -0.59
LINC01960-201ENST00000563759 DMAC1Q96GE9 116 aa11.25□□□□□ -0.61
LINC01960-201ENST00000563759 KRTAP4-1Q9BYQ7 146 aa11.23□□□□□ -0.61
LINC01960-201ENST00000563759 COX6B2Q6YFQ2 88 aa11.21□□□□□ -0.61
LINC01960-201ENST00000563759 UBR4Q5T4S7 5183 aa11.2□□□□□ -0.62
LINC01960-201ENST00000563759 A8MUN3 132 aa11.19□□□□□ -0.62
LINC01960-201ENST00000563759 RBM12B-AS1Q9P1G2 102 aa11.18□□□□□ -0.62
LINC01960-201ENST00000563759 ACYP2P14621 99 aa11.17□□□□□ -0.62
LINC01960-201ENST00000563759 MPLKIPQ8TAP9 179 aa11.15□□□□□ -0.62
LINC01960-201ENST00000563759 BRK1Q8WUW1 75 aa11.15□□□□□ -0.63
LINC01960-201ENST00000563759 KRTAP3-1Q9BYR8 98 aa11.14□□□□□ -0.63
LINC01960-201ENST00000563759 MUC2Q02817 5179 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms