RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 A0A1B0GVX0 72 aa9.11□□□□□ -0.95
VPS4A-202ENST00000562754 IGHV6-1A0A0B4J1U7 121 aa9.09□□□□□ -0.95
VPS4A-202ENST00000562754 NOTCH2NLQ7Z3S9 236 aa9.09□□□□□ -0.95
VPS4A-202ENST00000562754 LPAP08519 4548 aa9.08□□□□□ -0.96
VPS4A-202ENST00000562754 K7EQZ3 153 aa9.08□□□□□ -0.96
VPS4A-202ENST00000562754 K7ERU9 68 aa9.08□□□□□ -0.96
VPS4A-202ENST00000562754 NDUFB1O75438 58 aa9.07□□□□□ -0.96
VPS4A-202ENST00000562754 PRR15Q8IV56 129 aa9.07□□□□□ -0.96
VPS4A-202ENST00000562754 Q8N9L7 120 aa9.07□□□□□ -0.96
VPS4A-202ENST00000562754 CDIP1Q9H305 208 aa9.06□□□□□ -0.96
VPS4A-202ENST00000562754 CXCL6P80162 114 aa9.05□□□□□ -0.96
VPS4A-202ENST00000562754 XP32Q5T750 250 aa9.04□□□□□ -0.96
VPS4A-202ENST00000562754 C8orf87E5RJ46 101 aa9.03□□□□□ -0.96
VPS4A-202ENST00000562754 LINC00313P59037 77 aa9.03□□□□□ -0.96
VPS4A-202ENST00000562754 LINC00643Q86TS7 51 aa9.03□□□□□ -0.96
VPS4A-202ENST00000562754 KRTAP16-1A8MUX0 517 aa9.02□□□□□ -0.97
VPS4A-202ENST00000562754 ATP5EP2Q5VTU8 51 aa9.02□□□□□ -0.97
VPS4A-202ENST00000562754 C8orf17Q9NRJ1 99 aa9.02□□□□□ -0.97
VPS4A-202ENST00000562754 MMP24-AS1A0A0U1RRL7 71 aa9□□□□□ -0.97
VPS4A-202ENST00000562754 LRP2P98164 4655 aa8.99□□□□□ -0.97
VPS4A-202ENST00000562754 C20orf166-AS1Q96NR2 134 aa8.94□□□□□ -0.98
VPS4A-202ENST00000562754 A8MUU9 505 aa8.93□□□□□ -0.98
VPS4A-202ENST00000562754 RPL37P61927 97 aaKnown RBP8.93□□□□□ -0.98
VPS4A-202ENST00000562754 WFDC13Q8IUB5 93 aa8.92□□□□□ -0.98
VPS4A-202ENST00000562754 hDV103S1A0JD37 113 aa8.91□□□□□ -0.98
VPS4A-202ENST00000562754 HCG22E2RYF7 251 aa8.91□□□□□ -0.98
VPS4A-202ENST00000562754 Q75L30 129 aa8.91□□□□□ -0.98
VPS4A-202ENST00000562754 TMEM254Q8TBM7 123 aa8.91□□□□□ -0.98
VPS4A-202ENST00000562754 CASC2Q6XLA1 102 aa8.9□□□□□ -0.98
VPS4A-202ENST00000562754 HIST1H4AP62805 103 aaKnown RBP8.89□□□□□ -0.99
VPS4A-202ENST00000562754 MRPL34Q9BQ48 92 aaKnown RBP8.89□□□□□ -0.99
VPS4A-202ENST00000562754 MT-ATP8P03928 68 aa8.88□□□□□ -0.99
VPS4A-202ENST00000562754 A0A087WVE0 104 aa8.87□□□□□ -0.99
VPS4A-202ENST00000562754 Q8N9P0 234 aaPredicted RBP8.87□□□□□ -0.99
VPS4A-202ENST00000562754 MUC17Q685J3 4493 aa8.86□□□□□ -0.99
VPS4A-202ENST00000562754 SEC61BP60468 96 aaKnown RBP8.83□□□□□ -1
VPS4A-202ENST00000562754 PCOTHQ58A44 107 aa8.83□□□□□ -1
VPS4A-202ENST00000562754 NDUFS5O43920 106 aa8.79□□□□□ -1
VPS4A-202ENST00000562754 ATP11AUNQ6ZP68 121 aa8.78□□□□□ -1
VPS4A-202ENST00000562754 IMUPQ9GZP8 106 aa8.77□□□□□ -1.01
VPS4A-202ENST00000562754 UBR4Q5T4S7 5183 aa8.77□□□□□ -1.01
VPS4A-202ENST00000562754 ZCCHC13Q8WW36 166 aaKnown RBP8.76□□□□□ -1.01
VPS4A-202ENST00000562754 KRTAP4-1Q9BYQ7 146 aa8.74□□□□□ -1.01
VPS4A-202ENST00000562754 Q5W150 140 aa8.7□□□□□ -1.02
VPS4A-202ENST00000562754 TP53AIP1Q9HCN2 124 aa8.67□□□□□ -1.02
VPS4A-202ENST00000562754 FAM236AA0A1B0GUQ0 79 aa8.66□□□□□ -1.02
VPS4A-202ENST00000562754 FAM236BA0A1B0GV22 79 aa8.66□□□□□ -1.02
VPS4A-202ENST00000562754 RNF213Q63HN8 5207 aa8.65□□□□□ -1.03
VPS4A-202ENST00000562754 OCR1Q9BZK8 76 aa8.63□□□□□ -1.03
VPS4A-202ENST00000562754 UQCRQO14949 82 aa8.6□□□□□ -1.03
VPS4A-202ENST00000562754 SCGB1A1P11684 91 aa8.6□□□□□ -1.03
VPS4A-202ENST00000562754 TRAV22A0A0B4J277 110 aa8.57□□□□□ -1.04
VPS4A-202ENST00000562754 SPINK7P58062 85 aa8.56□□□□□ -1.04
VPS4A-202ENST00000562754 IGKV2D-30A0A075B6S6 120 aa8.54□□□□□ -1.04
VPS4A-202ENST00000562754 IGKV2-30P06310 120 aa8.54□□□□□ -1.04
VPS4A-202ENST00000562754 H0Y9P7 68 aa8.53□□□□□ -1.04
VPS4A-202ENST00000562754 ATOX1O00244 68 aa8.52□□□□□ -1.05
VPS4A-202ENST00000562754 HRES1P13985 223 aa8.52□□□□□ -1.05
VPS4A-202ENST00000562754 C7orf65Q6ZTY9 151 aa8.51□□□□□ -1.05
VPS4A-202ENST00000562754 MUC2Q02817 5179 aa8.51□□□□□ -1.05
VPS4A-202ENST00000562754 TRAV7A0A075B6U4 112 aa8.49□□□□□ -1.05
VPS4A-202ENST00000562754 SMIM20Q8N5G0 67 aa8.49□□□□□ -1.05
VPS4A-202ENST00000562754 KRTAP19-2Q3LHN2 52 aa8.47□□□□□ -1.05
VPS4A-202ENST00000562754 C5orf47Q569G3 176 aa8.46□□□□□ -1.06
VPS4A-202ENST00000562754 MPLKIPQ8TAP9 179 aa8.46□□□□□ -1.06
VPS4A-202ENST00000562754 LOC101927531A0A1B0GV80 90 aa8.45□□□□□ -1.06
VPS4A-202ENST00000562754 MP68P56378 58 aa8.44□□□□□ -1.06
VPS4A-202ENST00000562754 LINC00208Q96KT6 92 aa8.44□□□□□ -1.06
VPS4A-202ENST00000562754 C1orf64Q8NEQ6 169 aa8.43□□□□□ -1.06
VPS4A-202ENST00000562754 CYP4F30PQ9H0H9 118 aa8.43□□□□□ -1.06
VPS4A-202ENST00000562754 SERP2Q8N6R1 65 aa8.41□□□□□ -1.06
VPS4A-202ENST00000562754 H3BPC8 53 aa8.39□□□□□ -1.07
VPS4A-202ENST00000562754 LCE2CQ5TA81 110 aa8.39□□□□□ -1.07
VPS4A-202ENST00000562754 RBM12B-AS1Q9P1G2 102 aa8.36□□□□□ -1.07
VPS4A-202ENST00000562754 A0A0U1RQV1 116 aa8.34□□□□□ -1.07
VPS4A-202ENST00000562754 KLKP1Q107X0 134 aa8.34□□□□□ -1.07
VPS4A-202ENST00000562754 C4orf26Q17RF5 130 aa8.34□□□□□ -1.07
VPS4A-202ENST00000562754 COX6B2Q6YFQ2 88 aa8.34□□□□□ -1.07
VPS4A-202ENST00000562754 FAM236DA0A1B0GTK5 79 aa8.32□□□□□ -1.08
VPS4A-202ENST00000562754 FAM236CP0DP71 79 aa8.32□□□□□ -1.08
VPS4A-202ENST00000562754 FAT4Q6V0I7 4981 aa8.31□□□□□ -1.08
VPS4A-202ENST00000562754 COX7CP15954 63 aa8.3□□□□□ -1.08
VPS4A-202ENST00000562754 ANAPC13Q9BS18 74 aa8.3□□□□□ -1.08
VPS4A-202ENST00000562754 C20orf197Q8N268 126 aa8.29□□□□□ -1.08
VPS4A-202ENST00000562754 SNURFQ9Y675 71 aa8.29□□□□□ -1.08
VPS4A-202ENST00000562754 KRTAP3-1Q9BYR8 98 aa8.26□□□□□ -1.09
VPS4A-202ENST00000562754 FLGP20930 4061 aaPredicted RBP8.24□□□□□ -1.09
VPS4A-202ENST00000562754 MT1HP80294 61 aa8.23□□□□□ -1.09
VPS4A-202ENST00000562754 H1FX-AS1Q4G0G2 97 aa8.2□□□□□ -1.1
VPS4A-202ENST00000562754 LCE2AQ5TA79 106 aaPredicted RBP8.19□□□□□ -1.1
VPS4A-202ENST00000562754 CYSTM1Q9H1C7 97 aa8.16□□□□□ -1.1
VPS4A-202ENST00000562754 CCDC179H3BU77 68 aa8.15□□□□□ -1.1
VPS4A-202ENST00000562754 A8MUN3 132 aa8.1□□□□□ -1.11
VPS4A-202ENST00000562754 DMAC1Q96GE9 116 aa8.1□□□□□ -1.11
VPS4A-202ENST00000562754 H7BZZ5 65 aa8.07□□□□□ -1.12
VPS4A-202ENST00000562754 M0R2T5 61 aa8.06□□□□□ -1.12
VPS4A-202ENST00000562754 SPANXA2-OT1Q8N9U9 137 aa8.06□□□□□ -1.12
VPS4A-202ENST00000562754 NDUFC1O43677 76 aa8.05□□□□□ -1.12
VPS4A-202ENST00000562754 S4R3F8 94 aa8.05□□□□□ -1.12
VPS4A-202ENST00000562754 LCA10Q71F78 164 aa8.02□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 69.3 ms