RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 PRO0461Q9UI25 63 aa6.15□□□□□ -1.42
CCDC88C-212ENST00000556767 NREPQ16612 68 aa6.14□□□□□ -1.43
CCDC88C-212ENST00000556767 ATP11AUNQ6ZP68 121 aa6.13□□□□□ -1.43
CCDC88C-212ENST00000556767 KRTAP4-1Q9BYQ7 146 aa6.13□□□□□ -1.43
CCDC88C-212ENST00000556767 A0A1B0GVX0 72 aa6.12□□□□□ -1.43
CCDC88C-212ENST00000556767 NDUFB1O75438 58 aa6.12□□□□□ -1.43
CCDC88C-212ENST00000556767 Q75L30 129 aa6.12□□□□□ -1.43
CCDC88C-212ENST00000556767 NOTCH2NLQ7Z3S9 236 aa6.11□□□□□ -1.43
CCDC88C-212ENST00000556767 C8orf87E5RJ46 101 aa6.1□□□□□ -1.43
CCDC88C-212ENST00000556767 F8W1H4 67 aa6.1□□□□□ -1.43
CCDC88C-212ENST00000556767 KRTAP3-3Q9BYR6 98 aa6.1□□□□□ -1.43
CCDC88C-212ENST00000556767 KRTAP3-2Q9BYR7 98 aa6.1□□□□□ -1.43
CCDC88C-212ENST00000556767 C20orf166-AS1Q96NR2 134 aa6.09□□□□□ -1.43
CCDC88C-212ENST00000556767 A8MUU9 505 aa6.08□□□□□ -1.44
CCDC88C-212ENST00000556767 A8MWP4 228 aa6.08□□□□□ -1.44
CCDC88C-212ENST00000556767 KRTAP16-1A8MUX0 517 aa6.06□□□□□ -1.44
CCDC88C-212ENST00000556767 ETDBQ3ZM63 59 aa6.06□□□□□ -1.44
CCDC88C-212ENST00000556767 MUC2Q02817 5179 aa6.06□□□□□ -1.44
CCDC88C-212ENST00000556767 IGKV3D-7A0A0C4DH55 119 aa6.05□□□□□ -1.44
CCDC88C-212ENST00000556767 BPY2O14599 106 aa6.04□□□□□ -1.44
CCDC88C-212ENST00000556767 Q6ZVQ6 151 aa6.04□□□□□ -1.44
CCDC88C-212ENST00000556767 C8orf17Q9NRJ1 99 aa6.04□□□□□ -1.44
CCDC88C-212ENST00000556767 PRR15Q8IV56 129 aa6.03□□□□□ -1.44
CCDC88C-212ENST00000556767 UBL5Q9BZL1 73 aa6.02□□□□□ -1.45
CCDC88C-212ENST00000556767 LINC00846Q9NV44 126 aa6.02□□□□□ -1.45
CCDC88C-212ENST00000556767 A0A1B0GV90 55 aa6□□□□□ -1.45
CCDC88C-212ENST00000556767 K7EQZ3 153 aa6□□□□□ -1.45
CCDC88C-212ENST00000556767 Q8N9L7 120 aa5.97□□□□□ -1.45
CCDC88C-212ENST00000556767 MMP24-AS1A0A0U1RRL7 71 aa5.96□□□□□ -1.46
CCDC88C-212ENST00000556767 COX6B2Q6YFQ2 88 aa5.96□□□□□ -1.46
CCDC88C-212ENST00000556767 FAT4Q6V0I7 4981 aa5.96□□□□□ -1.46
CCDC88C-212ENST00000556767 hDV103S1A0JD37 113 aa5.95□□□□□ -1.46
CCDC88C-212ENST00000556767 Q8N9P0 234 aaPredicted RBP5.95□□□□□ -1.46
CCDC88C-212ENST00000556767 TMEM254Q8TBM7 123 aa5.95□□□□□ -1.46
CCDC88C-212ENST00000556767 MRPL34Q9BQ48 92 aaKnown RBP5.95□□□□□ -1.46
CCDC88C-212ENST00000556767 NDUFS5O43920 106 aa5.94□□□□□ -1.46
CCDC88C-212ENST00000556767 WFDC13Q8IUB5 93 aa5.94□□□□□ -1.46
CCDC88C-212ENST00000556767 ZCCHC13Q8WW36 166 aaKnown RBP5.94□□□□□ -1.46
CCDC88C-212ENST00000556767 LCE2AQ5TA79 106 aaPredicted RBP5.92□□□□□ -1.46
CCDC88C-212ENST00000556767 ACYP1P07311 99 aa5.91□□□□□ -1.46
CCDC88C-212ENST00000556767 KRTAP19-2Q3LHN2 52 aa5.91□□□□□ -1.46
CCDC88C-212ENST00000556767 LCE2CQ5TA81 110 aa5.91□□□□□ -1.46
CCDC88C-212ENST00000556767 CASC2Q6XLA1 102 aa5.91□□□□□ -1.46
CCDC88C-212ENST00000556767 CXCL6P80162 114 aa5.88□□□□□ -1.47
CCDC88C-212ENST00000556767 FAM240AA0A1B0GVK7 77 aa5.87□□□□□ -1.47
CCDC88C-212ENST00000556767 HCG22E2RYF7 251 aa5.87□□□□□ -1.47
CCDC88C-212ENST00000556767 FAM236DA0A1B0GTK5 79 aa5.86□□□□□ -1.47
CCDC88C-212ENST00000556767 FAM236CP0DP71 79 aa5.86□□□□□ -1.47
CCDC88C-212ENST00000556767 SPINK7P58062 85 aa5.86□□□□□ -1.47
CCDC88C-212ENST00000556767 MT1HP80294 61 aa5.85□□□□□ -1.47
CCDC88C-212ENST00000556767 M0R2T5 61 aa5.84□□□□□ -1.47
CCDC88C-212ENST00000556767 RBM12B-AS1Q9P1G2 102 aa5.84□□□□□ -1.47
CCDC88C-212ENST00000556767 HRES1P13985 223 aa5.83□□□□□ -1.48
CCDC88C-212ENST00000556767 ATP5EP2Q5VTU8 51 aa5.81□□□□□ -1.48
CCDC88C-212ENST00000556767 J3QR89 54 aa5.8□□□□□ -1.48
CCDC88C-212ENST00000556767 HIST1H4AP62805 103 aaKnown RBP5.8□□□□□ -1.48
CCDC88C-212ENST00000556767 Q5W150 140 aa5.8□□□□□ -1.48
CCDC88C-212ENST00000556767 IGKV2D-30A0A075B6S6 120 aa5.79□□□□□ -1.48
CCDC88C-212ENST00000556767 IGKV2-30P06310 120 aa5.79□□□□□ -1.48
CCDC88C-212ENST00000556767 LINC00643Q86TS7 51 aa5.78□□□□□ -1.48
CCDC88C-212ENST00000556767 MPLKIPQ8TAP9 179 aa5.77□□□□□ -1.49
CCDC88C-212ENST00000556767 C7orf65Q6ZTY9 151 aa5.75□□□□□ -1.49
CCDC88C-212ENST00000556767 TP53AIP1Q9HCN2 124 aa5.75□□□□□ -1.49
CCDC88C-212ENST00000556767 A0A087WVE0 104 aa5.71□□□□□ -1.5
CCDC88C-212ENST00000556767 KRTAP10-6P60371 365 aaPredicted RBP5.71□□□□□ -1.5
CCDC88C-212ENST00000556767 LORP23490 312 aaPredicted RBP5.67□□□□□ -1.5
CCDC88C-212ENST00000556767 K7ERU9 68 aa5.65□□□□□ -1.5
CCDC88C-212ENST00000556767 C4orf26Q17RF5 130 aa5.65□□□□□ -1.5
CCDC88C-212ENST00000556767 TRAV22A0A0B4J277 110 aa5.64□□□□□ -1.51
CCDC88C-212ENST00000556767 UQCRQO14949 82 aa5.64□□□□□ -1.51
CCDC88C-212ENST00000556767 H1FX-AS1Q4G0G2 97 aa5.63□□□□□ -1.51
CCDC88C-212ENST00000556767 KRTAP9-2Q9BYQ4 174 aa5.63□□□□□ -1.51
CCDC88C-212ENST00000556767 FLGP20930 4061 aaPredicted RBP5.62□□□□□ -1.51
CCDC88C-212ENST00000556767 H0Y9P7 68 aa5.61□□□□□ -1.51
CCDC88C-212ENST00000556767 LOC101927531A0A1B0GV80 90 aa5.6□□□□□ -1.51
CCDC88C-212ENST00000556767 CYP4F30PQ9H0H9 118 aa5.59□□□□□ -1.51
CCDC88C-212ENST00000556767 ATOX1O00244 68 aa5.58□□□□□ -1.52
CCDC88C-212ENST00000556767 SCGB1A1P11684 91 aa5.58□□□□□ -1.52
CCDC88C-212ENST00000556767 C1orf64Q8NEQ6 169 aa5.57□□□□□ -1.52
CCDC88C-212ENST00000556767 MT-ATP8P03928 68 aa5.56□□□□□ -1.52
CCDC88C-212ENST00000556767 MP68P56378 58 aa5.55□□□□□ -1.52
CCDC88C-212ENST00000556767 KRTAP9-8Q9BYQ0 159 aa5.55□□□□□ -1.52
CCDC88C-212ENST00000556767 OCR1Q9BZK8 76 aa5.55□□□□□ -1.52
CCDC88C-212ENST00000556767 LINC00208Q96KT6 92 aa5.54□□□□□ -1.52
CCDC88C-212ENST00000556767 IMUPQ9GZP8 106 aa5.54□□□□□ -1.52
CCDC88C-212ENST00000556767 KRTAP3-1Q9BYR8 98 aa5.52□□□□□ -1.53
CCDC88C-212ENST00000556767 MT2AP02795 61 aa5.51□□□□□ -1.53
CCDC88C-212ENST00000556767 C5orf47Q569G3 176 aa5.51□□□□□ -1.53
CCDC88C-212ENST00000556767 KRTAP10-10P60014 251 aa5.49□□□□□ -1.53
CCDC88C-212ENST00000556767 S4R3F8 94 aa5.49□□□□□ -1.53
CCDC88C-212ENST00000556767 FAM236AA0A1B0GUQ0 79 aa5.47□□□□□ -1.53
CCDC88C-212ENST00000556767 FAM236BA0A1B0GV22 79 aa5.47□□□□□ -1.53
CCDC88C-212ENST00000556767 MT1FP04733 61 aa5.47□□□□□ -1.53
CCDC88C-212ENST00000556767 H3BPC8 53 aa5.45□□□□□ -1.54
CCDC88C-212ENST00000556767 KLKP1Q107X0 134 aa5.45□□□□□ -1.54
CCDC88C-212ENST00000556767 LCA10Q71F78 164 aa5.44□□□□□ -1.54
CCDC88C-212ENST00000556767 CSAG1Q6PB30 78 aa5.43□□□□□ -1.54
CCDC88C-212ENST00000556767 SMIM20Q8N5G0 67 aa5.43□□□□□ -1.54
CCDC88C-212ENST00000556767 TRAV7A0A075B6U4 112 aa5.41□□□□□ -1.54
CCDC88C-212ENST00000556767 KRTAP9-6A0A140TA67 174 aa5.38□□□□□ -1.55
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms