RNA–Protein interactions for RNA: ENST00000553923.1

SRP54-204, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 573 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-204ENST00000553923 KIF21BO75037 1637 aa0.16□□□□□ -2.38
SRP54-204ENST00000553923 NDUFA1O15239 70 aa0.16□□□□□ -2.38
SRP54-204ENST00000553923 KRTAP6-2Q3LI66 62 aa0.16□□□□□ -2.38
SRP54-204ENST00000553923 NAV2Q8IVL1 2488 aa0.16□□□□□ -2.38
SRP54-204ENST00000553923 HIVEP3Q5T1R4 2406 aa0.16□□□□□ -2.38
SRP54-204ENST00000553923 NSD1Q96L73 2696 aaPredicted RBP0.16□□□□□ -2.38
SRP54-204ENST00000553923 TNP1P09430 55 aa0.15□□□□□ -2.39
SRP54-204ENST00000553923 CHD8Q9HCK8 2581 aa0.15□□□□□ -2.39
SRP54-204ENST00000553923 HECTD1Q9ULT8 2610 aa0.15□□□□□ -2.39
SRP54-204ENST00000553923 NFAT5O94916 1531 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 A8MTW9 85 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 SPRR2AP35326 72 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 IQGAP2Q13576 1575 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 IQGAP1P46940 1657 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 SPTA1P02549 2419 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 MAST4O15021 2626 aa0.14□□□□□ -2.39
SRP54-204ENST00000553923 COL7A1Q02388 2944 aa0.13□□□□□ -2.39
SRP54-204ENST00000553923 M0QZ58 72 aa0.13□□□□□ -2.39
SRP54-204ENST00000553923 PCNX1Q96RV3 2341 aa0.13□□□□□ -2.39
SRP54-204ENST00000553923 DDX60Q8IY21 1712 aaKnown RBP0.13□□□□□ -2.39
SRP54-204ENST00000553923 DCHS2Q6V1P9 2916 aa0.12□□□□□ -2.39
SRP54-204ENST00000553923 POLR2KP53803 58 aaKnown RBP0.12□□□□□ -2.39
SRP54-204ENST00000553923 DMXL1Q9Y485 3027 aa0.12□□□□□ -2.39
SRP54-204ENST00000553923 ACANP16112 2415 aa0.12□□□□□ -2.39
SRP54-204ENST00000553923 FAM208AQ9UK61 1670 aaKnown RBP0.11□□□□□ -2.39
SRP54-204ENST00000553923 PKD1P98161 4303 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 IGSF10Q6WRI0 2623 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 HECTD4Q9Y4D8 3996 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 TRPM2O94759 1503 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 PDZD2O15018 2839 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 NF1P21359 2839 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 LRP1BQ9NZR2 4599 aa0.11□□□□□ -2.39
SRP54-204ENST00000553923 FLNBO75369 2602 aaKnown RBP0.1□□□□□ -2.39
SRP54-204ENST00000553923 VPS13BQ7Z7G8 4022 aa0.1□□□□□ -2.39
SRP54-204ENST00000553923 SPART-AS1P0CW21 52 aa0.1□□□□□ -2.39
SRP54-204ENST00000553923 SSPOA2VEC9 5147 aa0.1□□□□□ -2.39
SRP54-204ENST00000553923 SPTBN4Q9H254 2564 aa0.1□□□□□ -2.39
SRP54-204ENST00000553923 LRP2P98164 4655 aa0.1□□□□□ -2.39
SRP54-204ENST00000553923 SPRR2EP22531 72 aa0.09□□□□□ -2.4
SRP54-204ENST00000553923 CLPSL2Q6UWE3 100 aa0.09□□□□□ -2.4
SRP54-204ENST00000553923 FLNCQ14315 2725 aa0.09□□□□□ -2.4
SRP54-204ENST00000553923 COL6A3P12111 3177 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 CREBBPQ92793 2442 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 SACSQ9NZJ4 4579 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 KALRNO60229 2985 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 MT1AP04731 61 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 PKHD1P08F94 4074 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 APC2O95996 2303 aa0.08□□□□□ -2.4
SRP54-204ENST00000553923 TRIOO75962 3097 aa0.07□□□□□ -2.4
SRP54-204ENST00000553923 HTTP42858 3142 aa0.07□□□□□ -2.4
SRP54-204ENST00000553923 WNK1Q9H4A3 2382 aa0.06□□□□□ -2.4
SRP54-204ENST00000553923 SVEP1Q4LDE5 3571 aa0.06□□□□□ -2.4
SRP54-204ENST00000553923 DMBT1Q9UGM3 2413 aaPredicted RBP0.06□□□□□ -2.4
SRP54-204ENST00000553923 CLTCL1P53675 1640 aa0.06□□□□□ -2.4
SRP54-204ENST00000553923 MAP1BP46821 2468 aaKnown RBP0.06□□□□□ -2.4
SRP54-204ENST00000553923 PKD1L2Q7Z442 2459 aa0.06□□□□□ -2.4
SRP54-204ENST00000553923 CUBNO60494 3623 aa0.06□□□□□ -2.4
SRP54-204ENST00000553923 SETD2Q9BYW2 2564 aaPredicted RBP0.06□□□□□ -2.4
SRP54-204ENST00000553923 GCN1Q92616 2671 aaKnown RBP0.06□□□□□ -2.4
SRP54-204ENST00000553923 SRRM2Q9UQ35 2752 aaKnown RBP0.06□□□□□ -2.4
SRP54-204ENST00000553923 MAP1AP78559 2803 aaPredicted RBP0.05□□□□□ -2.4
SRP54-204ENST00000553923 TACC2O95359 2948 aa0.05□□□□□ -2.4
SRP54-204ENST00000553923 PKHD1L1Q86WI1 4243 aa0.05□□□□□ -2.4
SRP54-204ENST00000553923 FLGP20930 4061 aaPredicted RBP0.05□□□□□ -2.4
SRP54-204ENST00000553923 SPRR2FQ96RM1 72 aa0.05□□□□□ -2.4
SRP54-204ENST00000553923 NEBP20929 6669 aa0.05□□□□□ -2.4
SRP54-204ENST00000553923 AKAP9Q99996 3911 aa0.05□□□□□ -2.4
SRP54-204ENST00000553923 ZZEF1O43149 2961 aa0.04□□□□□ -2.4
SRP54-204ENST00000553923 SONP18583 2426 aaKnown RBP0.04□□□□□ -2.4
SRP54-204ENST00000553923 TOMM7Q9P0U1 55 aa0.04□□□□□ -2.4
SRP54-204ENST00000553923 STAB1Q9NY15 2570 aa0.04□□□□□ -2.4
SRP54-204ENST00000553923 A0A0C4DFX4 3053 aa0.04□□□□□ -2.4
SRP54-204ENST00000553923 TENM2Q9NT68 2774 aa0.03□□□□□ -2.4
SRP54-204ENST00000553923 ANKRD11Q6UB99 2663 aaPredicted RBP0.03□□□□□ -2.4
SRP54-204ENST00000553923 APOBP04114 4563 aaKnown RBP0.03□□□□□ -2.4
SRP54-204ENST00000553923 FAT3Q8TDW7 4589 aa0.03□□□□□ -2.4
SRP54-204ENST00000553923 NBASA2RRP1 2371 aa0.03□□□□□ -2.41
SRP54-204ENST00000553923 ANK3Q12955 4377 aaKnown RBP0.03□□□□□ -2.41
SRP54-204ENST00000553923 CEP290O15078 2479 aa0.03□□□□□ -2.41
SRP54-204ENST00000553923 DNAH9Q9NYC9 4486 aa0.03□□□□□ -2.41
SRP54-204ENST00000553923 ATP7AQ04656 1500 aa0.03□□□□□ -2.41
SRP54-204ENST00000553923 FLNAP21333 2647 aaKnown RBP0.02□□□□□ -2.41
SRP54-204ENST00000553923 UTP20O75691 2785 aaKnown RBP0.02□□□□□ -2.41
SRP54-204ENST00000553923 ZANQ9Y493 2812 aa0.02□□□□□ -2.41
SRP54-204ENST00000553923 DEFB1P60022 68 aa0.02□□□□□ -2.41
SRP54-204ENST00000553923 RPL39P62891 51 aaKnown RBP0.02□□□□□ -2.41
SRP54-204ENST00000553923 KRTAP19-7Q3SYF9 63 aa0.02□□□□□ -2.41
SRP54-204ENST00000553923 DNAH3Q8TD57 4116 aa0.02□□□□□ -2.41
SRP54-204ENST00000553923 TOP2AP11388 1531 aaKnown RBP0.02□□□□□ -2.41
SRP54-204ENST00000553923 SAMD9LQ8IVG5 1584 aa0.02□□□□□ -2.41
SRP54-204ENST00000553923 HIVEP1P15822 2718 aa0.01□□□□□ -2.41
SRP54-204ENST00000553923 MTORP42345 2549 aa0□□□□□ -2.41
SRP54-204ENST00000553923 RANBP2P49792 3224 aaKnown RBP0□□□□□ -2.41
SRP54-204ENST00000553923 WDR87Q6ZQQ6 2873 aa0□□□□□ -2.41
SRP54-204ENST00000553923 KRTAP8-1Q8IUC2 63 aa0□□□□□ -2.41
SRP54-204ENST00000553923 DNAH2Q9P225 4427 aa-0□□□□□ -2.41
SRP54-204ENST00000553923 NBEAQ8NFP9 2946 aa-0□□□□□ -2.41
SRP54-204ENST00000553923 NBEAL1Q6ZS30 2694 aa-0□□□□□ -2.41
SRP54-204ENST00000553923 MUC2Q02817 5179 aa-0□□□□□ -2.41
SRP54-204ENST00000553923 DNAH11Q96DT5 4516 aa-0.01□□□□□ -2.41
Retrieved 100 of 20,778 RNA–protein pairs in 74 ms