RNA–Protein interactions for RNA: ENST00000545998.1

HMGA2-211, Transcript of high mobility group AT-hook 2, humanhuman

TSL 1 (best)

Gene HMGA2, Length 1,584 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA2-211ENST00000545998 PCOTHQ58A44 107 aa10.98□□□□□ -0.65
HMGA2-211ENST00000545998 IGHV6-1A0A0B4J1U7 121 aa10.97□□□□□ -0.65
HMGA2-211ENST00000545998 A0A1B0GVX0 72 aa10.97□□□□□ -0.65
HMGA2-211ENST00000545998 ETDBQ3ZM63 59 aa10.97□□□□□ -0.65
HMGA2-211ENST00000545998 Q75L30 129 aa10.96□□□□□ -0.65
HMGA2-211ENST00000545998 NOTCH2NLQ7Z3S9 236 aa10.96□□□□□ -0.65
HMGA2-211ENST00000545998 KRTAP4-1Q9BYQ7 146 aa10.95□□□□□ -0.66
HMGA2-211ENST00000545998 C20orf166-AS1Q96NR2 134 aa10.94□□□□□ -0.66
HMGA2-211ENST00000545998 A0A1B0GV90 55 aa10.92□□□□□ -0.66
HMGA2-211ENST00000545998 KRTAP16-1A8MUX0 517 aa10.92□□□□□ -0.66
HMGA2-211ENST00000545998 A8MWP4 228 aa10.92□□□□□ -0.66
HMGA2-211ENST00000545998 A8MUU9 505 aa10.91□□□□□ -0.66
HMGA2-211ENST00000545998 C8orf87E5RJ46 101 aa10.91□□□□□ -0.66
HMGA2-211ENST00000545998 NDUFB1O75438 58 aa10.9□□□□□ -0.66
HMGA2-211ENST00000545998 Q6ZVQ6 151 aa10.89□□□□□ -0.67
HMGA2-211ENST00000545998 IGKV3D-7A0A0C4DH55 119 aa10.88□□□□□ -0.67
HMGA2-211ENST00000545998 LINC00846Q9NV44 126 aa10.87□□□□□ -0.67
HMGA2-211ENST00000545998 FAT4Q6V0I7 4981 aa10.85□□□□□ -0.67
HMGA2-211ENST00000545998 ATP11AUNQ6ZP68 121 aa10.85□□□□□ -0.67
HMGA2-211ENST00000545998 PRR15Q8IV56 129 aa10.85□□□□□ -0.67
HMGA2-211ENST00000545998 BPY2O14599 106 aa10.84□□□□□ -0.67
HMGA2-211ENST00000545998 UBL5Q9BZL1 73 aa10.82□□□□□ -0.68
HMGA2-211ENST00000545998 C8orf17Q9NRJ1 99 aa10.82□□□□□ -0.68
HMGA2-211ENST00000545998 K7EQZ3 153 aa10.8□□□□□ -0.68
HMGA2-211ENST00000545998 A0A0U1RQV1 116 aa10.79□□□□□ -0.68
HMGA2-211ENST00000545998 MMP24-AS1A0A0U1RRL7 71 aa10.74□□□□□ -0.69
HMGA2-211ENST00000545998 Q8N9P0 234 aaPredicted RBP10.73□□□□□ -0.69
HMGA2-211ENST00000545998 Q8N9L7 120 aa10.72□□□□□ -0.69
HMGA2-211ENST00000545998 ACYP1P07311 99 aa10.69□□□□□ -0.7
HMGA2-211ENST00000545998 FAM240AA0A1B0GVK7 77 aa10.69□□□□□ -0.7
HMGA2-211ENST00000545998 TMEM254Q8TBM7 123 aa10.68□□□□□ -0.7
HMGA2-211ENST00000545998 hDV103S1A0JD37 113 aa10.67□□□□□ -0.7
HMGA2-211ENST00000545998 MRPL34Q9BQ48 92 aaKnown RBP10.65□□□□□ -0.7
HMGA2-211ENST00000545998 CXCL6P80162 114 aa10.64□□□□□ -0.71
HMGA2-211ENST00000545998 KRTAP19-2Q3LHN2 52 aa10.64□□□□□ -0.71
HMGA2-211ENST00000545998 ZCCHC13Q8WW36 166 aaKnown RBP10.63□□□□□ -0.71
HMGA2-211ENST00000545998 CASC2Q6XLA1 102 aa10.59□□□□□ -0.71
HMGA2-211ENST00000545998 WFDC13Q8IUB5 93 aa10.59□□□□□ -0.71
HMGA2-211ENST00000545998 LCE2CQ5TA81 110 aa10.58□□□□□ -0.72
HMGA2-211ENST00000545998 LCE2AQ5TA79 106 aaPredicted RBP10.56□□□□□ -0.72
HMGA2-211ENST00000545998 HCG22E2RYF7 251 aa10.55□□□□□ -0.72
HMGA2-211ENST00000545998 NDUFS5O43920 106 aa10.54□□□□□ -0.72
HMGA2-211ENST00000545998 FLGP20930 4061 aaPredicted RBP10.53□□□□□ -0.72
HMGA2-211ENST00000545998 ATP5EP2Q5VTU8 51 aa10.51□□□□□ -0.73
HMGA2-211ENST00000545998 J3QR89 54 aa10.47□□□□□ -0.73
HMGA2-211ENST00000545998 COX6B2Q6YFQ2 88 aa10.46□□□□□ -0.74
HMGA2-211ENST00000545998 LINC00643Q86TS7 51 aa10.46□□□□□ -0.74
HMGA2-211ENST00000545998 SPINK7P58062 85 aa10.45□□□□□ -0.74
HMGA2-211ENST00000545998 HRES1P13985 223 aa10.44□□□□□ -0.74
HMGA2-211ENST00000545998 Q5W150 140 aa10.42□□□□□ -0.74
HMGA2-211ENST00000545998 MT1HP80294 61 aa10.41□□□□□ -0.74
HMGA2-211ENST00000545998 MPLKIPQ8TAP9 179 aa10.41□□□□□ -0.74
HMGA2-211ENST00000545998 HIST1H4AP62805 103 aaKnown RBP10.38□□□□□ -0.75
HMGA2-211ENST00000545998 RBM12B-AS1Q9P1G2 102 aa10.35□□□□□ -0.75
HMGA2-211ENST00000545998 TP53AIP1Q9HCN2 124 aa10.33□□□□□ -0.76
HMGA2-211ENST00000545998 A0A087WVE0 104 aa10.3□□□□□ -0.76
HMGA2-211ENST00000545998 IGKV2D-30A0A075B6S6 120 aa10.29□□□□□ -0.76
HMGA2-211ENST00000545998 FAM236DA0A1B0GTK5 79 aa10.29□□□□□ -0.76
HMGA2-211ENST00000545998 IGKV2-30P06310 120 aa10.29□□□□□ -0.76
HMGA2-211ENST00000545998 FAM236CP0DP71 79 aa10.29□□□□□ -0.76
HMGA2-211ENST00000545998 K7ERU9 68 aa10.27□□□□□ -0.76
HMGA2-211ENST00000545998 C7orf65Q6ZTY9 151 aa10.27□□□□□ -0.76
HMGA2-211ENST00000545998 M0R2T5 61 aa10.22□□□□□ -0.77
HMGA2-211ENST00000545998 TRAV22A0A0B4J277 110 aa10.16□□□□□ -0.78
HMGA2-211ENST00000545998 KRTAP10-6P60371 365 aaPredicted RBP10.15□□□□□ -0.78
HMGA2-211ENST00000545998 UQCRQO14949 82 aa10.14□□□□□ -0.79
HMGA2-211ENST00000545998 LORP23490 312 aaPredicted RBP10.13□□□□□ -0.79
HMGA2-211ENST00000545998 MT-ATP8P03928 68 aa10.1□□□□□ -0.79
HMGA2-211ENST00000545998 IMUPQ9GZP8 106 aa10.09□□□□□ -0.79
HMGA2-211ENST00000545998 C4orf26Q17RF5 130 aa10.08□□□□□ -0.8
HMGA2-211ENST00000545998 OCR1Q9BZK8 76 aa10.08□□□□□ -0.8
HMGA2-211ENST00000545998 H0Y9P7 68 aa10.05□□□□□ -0.8
HMGA2-211ENST00000545998 CYP4F30PQ9H0H9 118 aa10.05□□□□□ -0.8
HMGA2-211ENST00000545998 LOC101927531A0A1B0GV80 90 aa10.05□□□□□ -0.8
HMGA2-211ENST00000545998 ATOX1O00244 68 aa10.04□□□□□ -0.8
HMGA2-211ENST00000545998 H1FX-AS1Q4G0G2 97 aa10.03□□□□□ -0.8
HMGA2-211ENST00000545998 SCGB1A1P11684 91 aa9.99□□□□□ -0.81
HMGA2-211ENST00000545998 KRTAP3-1Q9BYR8 98 aa9.97□□□□□ -0.81
HMGA2-211ENST00000545998 C1orf64Q8NEQ6 169 aa9.95□□□□□ -0.82
HMGA2-211ENST00000545998 C5orf47Q569G3 176 aa9.94□□□□□ -0.82
HMGA2-211ENST00000545998 MP68P56378 58 aa9.92□□□□□ -0.82
HMGA2-211ENST00000545998 LINC00208Q96KT6 92 aa9.92□□□□□ -0.82
HMGA2-211ENST00000545998 KRTAP9-8Q9BYQ0 159 aa9.92□□□□□ -0.82
HMGA2-211ENST00000545998 FAM236AA0A1B0GUQ0 79 aa9.91□□□□□ -0.82
HMGA2-211ENST00000545998 FAM236BA0A1B0GV22 79 aa9.91□□□□□ -0.82
HMGA2-211ENST00000545998 KRTAP9-2Q9BYQ4 174 aa9.9□□□□□ -0.82
HMGA2-211ENST00000545998 LCE2DQ5TA82 110 aaPredicted RBP9.87□□□□□ -0.83
HMGA2-211ENST00000545998 H3BPC8 53 aa9.85□□□□□ -0.83
HMGA2-211ENST00000545998 KLKP1Q107X0 134 aa9.84□□□□□ -0.83
HMGA2-211ENST00000545998 SMIM20Q8N5G0 67 aa9.83□□□□□ -0.84
HMGA2-211ENST00000545998 MT2AP02795 61 aa9.82□□□□□ -0.84
HMGA2-211ENST00000545998 TRAV7A0A075B6U4 112 aa9.8□□□□□ -0.84
HMGA2-211ENST00000545998 S4R3F8 94 aa9.78□□□□□ -0.84
HMGA2-211ENST00000545998 MT1FP04733 61 aa9.75□□□□□ -0.85
HMGA2-211ENST00000545998 LCA10Q71F78 164 aa9.74□□□□□ -0.85
HMGA2-211ENST00000545998 KRTAP10-10P60014 251 aa9.7□□□□□ -0.86
HMGA2-211ENST00000545998 A8MUN3 132 aa9.69□□□□□ -0.86
HMGA2-211ENST00000545998 KRTAP3-3Q9BYR6 98 aa9.66□□□□□ -0.86
HMGA2-211ENST00000545998 CSAG1Q6PB30 78 aa9.65□□□□□ -0.86
HMGA2-211ENST00000545998 SERP2Q8N6R1 65 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms