RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 MYCBP2O75592 4640 aa10.05□□□□□ -0.8
CLIP1-215ENST00000541108 A0A1B0GVX0 72 aa10.02□□□□□ -0.8
CLIP1-215ENST00000541108 FAM236AA0A1B0GUQ0 79 aa10□□□□□ -0.81
CLIP1-215ENST00000541108 FAM236BA0A1B0GV22 79 aa10□□□□□ -0.81
CLIP1-215ENST00000541108 DMBT1Q9UGM3 2413 aaPredicted RBP9.99□□□□□ -0.81
CLIP1-215ENST00000541108 IGHV6-1A0A0B4J1U7 121 aa9.98□□□□□ -0.81
CLIP1-215ENST00000541108 HCG22E2RYF7 251 aa9.98□□□□□ -0.81
CLIP1-215ENST00000541108 C8orf17Q9NRJ1 99 aa9.95□□□□□ -0.82
CLIP1-215ENST00000541108 ABCA13Q86UQ4 5058 aa9.94□□□□□ -0.82
CLIP1-215ENST00000541108 C8orf87E5RJ46 101 aa9.94□□□□□ -0.82
CLIP1-215ENST00000541108 MMP24-AS1A0A0U1RRL7 71 aa9.93□□□□□ -0.82
CLIP1-215ENST00000541108 CASC2Q6XLA1 102 aa9.92□□□□□ -0.82
CLIP1-215ENST00000541108 RETNLBQ9BQ08 111 aa9.91□□□□□ -0.82
CLIP1-215ENST00000541108 hDV103S1A0JD37 113 aa9.9□□□□□ -0.82
CLIP1-215ENST00000541108 ATOX1O00244 68 aa9.9□□□□□ -0.82
CLIP1-215ENST00000541108 LINC00313P59037 77 aa9.9□□□□□ -0.82
CLIP1-215ENST00000541108 FP248Q71RG6 208 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-215ENST00000541108 WFDC13Q8IUB5 93 aa9.9□□□□□ -0.82
CLIP1-215ENST00000541108 NOTCH2NLQ7Z3S9 236 aa9.9□□□□□ -0.83
CLIP1-215ENST00000541108 J3QL48 77 aa9.87□□□□□ -0.83
CLIP1-215ENST00000541108 TMEM254Q8TBM7 123 aa9.87□□□□□ -0.83
CLIP1-215ENST00000541108 SMIM20Q8N5G0 67 aa9.86□□□□□ -0.83
CLIP1-215ENST00000541108 MRPL34Q9BQ48 92 aaKnown RBP9.84□□□□□ -0.83
CLIP1-215ENST00000541108 ANAPC13Q9BS18 74 aa9.81□□□□□ -0.84
CLIP1-215ENST00000541108 OCR1Q9BZK8 76 aa9.8□□□□□ -0.84
CLIP1-215ENST00000541108 KRTAP16-1A8MUX0 517 aa9.8□□□□□ -0.84
CLIP1-215ENST00000541108 IGLV7-46A0A075B6I9 117 aa9.78□□□□□ -0.84
CLIP1-215ENST00000541108 TRAV7A0A075B6U4 112 aa9.78□□□□□ -0.84
CLIP1-215ENST00000541108 SERP2Q8N6R1 65 aa9.77□□□□□ -0.84
CLIP1-215ENST00000541108 Q8N9P0 234 aaPredicted RBP9.77□□□□□ -0.84
CLIP1-215ENST00000541108 TP53AIP1Q9HCN2 124 aa9.77□□□□□ -0.85
CLIP1-215ENST00000541108 C9orf92A6NGG3 77 aa9.74□□□□□ -0.85
CLIP1-215ENST00000541108 PRR4Q16378 134 aa9.73□□□□□ -0.85
CLIP1-215ENST00000541108 UQCRQO14949 82 aa9.72□□□□□ -0.85
CLIP1-215ENST00000541108 NDUFS5O43920 106 aa9.72□□□□□ -0.85
CLIP1-215ENST00000541108 PCP4P48539 62 aa9.72□□□□□ -0.85
CLIP1-215ENST00000541108 COX7CP15954 63 aa9.71□□□□□ -0.85
CLIP1-215ENST00000541108 KRTAP13-3Q3SY46 172 aa9.7□□□□□ -0.86
CLIP1-215ENST00000541108 PCLOQ9Y6V0 5065 aa9.69□□□□□ -0.86
CLIP1-215ENST00000541108 C5orf47Q569G3 176 aa9.68□□□□□ -0.86
CLIP1-215ENST00000541108 C20orf166-AS1Q96NR2 134 aa9.67□□□□□ -0.86
CLIP1-215ENST00000541108 TPRXLQ17RH7 258 aa9.67□□□□□ -0.86
CLIP1-215ENST00000541108 A8MUU9 505 aa9.65□□□□□ -0.86
CLIP1-215ENST00000541108 TRAV22A0A0B4J277 110 aa9.62□□□□□ -0.87
CLIP1-215ENST00000541108 Q75L30 129 aa9.61□□□□□ -0.87
CLIP1-215ENST00000541108 MP68P56378 58 aa9.61□□□□□ -0.87
CLIP1-215ENST00000541108 XP32Q5T750 250 aa9.59□□□□□ -0.87
CLIP1-215ENST00000541108 H0Y9P7 68 aa9.58□□□□□ -0.88
CLIP1-215ENST00000541108 H3BPC8 53 aa9.58□□□□□ -0.88
CLIP1-215ENST00000541108 Q5W150 140 aa9.58□□□□□ -0.88
CLIP1-215ENST00000541108 CCDC179H3BU77 68 aa9.57□□□□□ -0.88
CLIP1-215ENST00000541108 C20orf197Q8N268 126 aa9.57□□□□□ -0.88
CLIP1-215ENST00000541108 KLKP1Q107X0 134 aa9.55□□□□□ -0.88
CLIP1-215ENST00000541108 ZCCHC13Q8WW36 166 aaKnown RBP9.55□□□□□ -0.88
CLIP1-215ENST00000541108 A0A0U1RQV1 116 aa9.54□□□□□ -0.88
CLIP1-215ENST00000541108 RPL37P61927 97 aaKnown RBP9.53□□□□□ -0.88
CLIP1-215ENST00000541108 LINC00208Q96KT6 92 aa9.51□□□□□ -0.89
CLIP1-215ENST00000541108 C1orf64Q8NEQ6 169 aa9.5□□□□□ -0.89
CLIP1-215ENST00000541108 SNURFQ9Y675 71 aa9.49□□□□□ -0.89
CLIP1-215ENST00000541108 ATP11AUNQ6ZP68 121 aa9.48□□□□□ -0.89
CLIP1-215ENST00000541108 LOC101927531A0A1B0GV80 90 aa9.48□□□□□ -0.89
CLIP1-215ENST00000541108 NDUFC1O43677 76 aa9.45□□□□□ -0.9
CLIP1-215ENST00000541108 LPAP08519 4548 aa9.42□□□□□ -0.9
CLIP1-215ENST00000541108 IGKV2-30P06310 120 aa9.42□□□□□ -0.9
CLIP1-215ENST00000541108 HERC1Q15751 4861 aa9.41□□□□□ -0.9
CLIP1-215ENST00000541108 CYP4F30PQ9H0H9 118 aa9.41□□□□□ -0.9
CLIP1-215ENST00000541108 CYSTM1Q9H1C7 97 aa9.41□□□□□ -0.9
CLIP1-215ENST00000541108 H7BZZ5 65 aa9.38□□□□□ -0.91
CLIP1-215ENST00000541108 LRP2P98164 4655 aa9.37□□□□□ -0.91
CLIP1-215ENST00000541108 C7orf65Q6ZTY9 151 aa9.36□□□□□ -0.91
CLIP1-215ENST00000541108 IGKV2D-30A0A075B6S6 120 aa9.36□□□□□ -0.91
CLIP1-215ENST00000541108 SEC61BP60468 96 aaKnown RBP9.33□□□□□ -0.92
CLIP1-215ENST00000541108 PCOTHQ58A44 107 aa9.33□□□□□ -0.92
CLIP1-215ENST00000541108 SPINK7P58062 85 aa9.32□□□□□ -0.92
CLIP1-215ENST00000541108 HMCN2Q8NDA2 5059 aa9.29□□□□□ -0.92
CLIP1-215ENST00000541108 TMEM258P61165 79 aa9.28□□□□□ -0.92
CLIP1-215ENST00000541108 SPANXA2-OT1Q8N9U9 137 aa9.26□□□□□ -0.93
CLIP1-215ENST00000541108 HRES1P13985 223 aa9.23□□□□□ -0.93
CLIP1-215ENST00000541108 ATP5EP56381 51 aaPredicted RBP9.2□□□□□ -0.94
CLIP1-215ENST00000541108 FAM236DA0A1B0GTK5 79 aa9.17□□□□□ -0.94
CLIP1-215ENST00000541108 FAM236CP0DP71 79 aa9.17□□□□□ -0.94
CLIP1-215ENST00000541108 C4orf26Q17RF5 130 aa9.13□□□□□ -0.95
CLIP1-215ENST00000541108 MUC17Q685J3 4493 aa9.12□□□□□ -0.95
CLIP1-215ENST00000541108 DMAC1Q96GE9 116 aa9.09□□□□□ -0.95
CLIP1-215ENST00000541108 A8MUN3 132 aa9.07□□□□□ -0.96
CLIP1-215ENST00000541108 COX6B2Q6YFQ2 88 aa9.07□□□□□ -0.96
CLIP1-215ENST00000541108 MPLKIPQ8TAP9 179 aa9.06□□□□□ -0.96
CLIP1-215ENST00000541108 KRTAP4-1Q9BYQ7 146 aa9.06□□□□□ -0.96
CLIP1-215ENST00000541108 ACYP2P14621 99 aa9.04□□□□□ -0.96
CLIP1-215ENST00000541108 RBM12B-AS1Q9P1G2 102 aa9.02□□□□□ -0.97
CLIP1-215ENST00000541108 KRTAP3-1Q9BYR8 98 aa9.01□□□□□ -0.97
CLIP1-215ENST00000541108 SERP1Q9Y6X1 66 aa8.98□□□□□ -0.97
CLIP1-215ENST00000541108 RPS28P62857 69 aaKnown RBP8.95□□□□□ -0.98
CLIP1-215ENST00000541108 COA5Q86WW8 74 aa8.93□□□□□ -0.98
CLIP1-215ENST00000541108 H1FX-AS1Q4G0G2 97 aa8.89□□□□□ -0.99
CLIP1-215ENST00000541108 MUC2Q02817 5179 aa8.88□□□□□ -0.99
CLIP1-215ENST00000541108 UBR4Q5T4S7 5183 aa8.87□□□□□ -0.99
CLIP1-215ENST00000541108 CHKB-CPT1BH3BT56 60 aa8.86□□□□□ -0.99
CLIP1-215ENST00000541108 KRTAP19-2Q3LHN2 52 aa8.83□□□□□ -1
CLIP1-215ENST00000541108 S4R3F8 94 aa8.78□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms