RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 DMXL1Q9Y485 3027 aa4.57□□□□□ -1.68
YBX3-208ENST00000540447 COL12A1Q99715 3063 aa4.57□□□□□ -1.68
YBX3-208ENST00000540447 KRTAP15-1Q3LI76 137 aa4.56□□□□□ -1.68
YBX3-208ENST00000540447 Q5VSD8 79 aa4.56□□□□□ -1.68
YBX3-208ENST00000540447 KRTAP13-3Q3SY46 172 aa4.55□□□□□ -1.68
YBX3-208ENST00000540447 ITPR3Q14573 2671 aa4.55□□□□□ -1.68
YBX3-208ENST00000540447 HECTD1Q9ULT8 2610 aa4.54□□□□□ -1.68
YBX3-208ENST00000540447 ZNF292O60281 2723 aa4.54□□□□□ -1.68
YBX3-208ENST00000540447 KRTAP12-2P59991 146 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 DCHS1Q96JQ0 3298 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 BAHCC1Q9P281 2608 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 DMXL2Q8TDJ6 3036 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 LOC400499M0QZD8 3231 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 STAB1Q9NY15 2570 aa4.53□□□□□ -1.68
YBX3-208ENST00000540447 CFAP47Q6ZTR5 3102 aa4.52□□□□□ -1.69
YBX3-208ENST00000540447 WDFY3Q8IZQ1 3526 aa4.52□□□□□ -1.69
YBX3-208ENST00000540447 LAMA5O15230 3695 aa4.5□□□□□ -1.69
YBX3-208ENST00000540447 ZZEF1O43149 2961 aa4.49□□□□□ -1.69
YBX3-208ENST00000540447 COL6A5A8TX70 2615 aa4.49□□□□□ -1.69
YBX3-208ENST00000540447 INE1O15225 51 aa4.49□□□□□ -1.69
YBX3-208ENST00000540447 CFAP46Q8IYW2 2715 aa4.48□□□□□ -1.69
YBX3-208ENST00000540447 ATMQ13315 3056 aa4.46□□□□□ -1.69
YBX3-208ENST00000540447 PRO2289Q9P1D8 64 aa4.45□□□□□ -1.7
YBX3-208ENST00000540447 TEP1Q99973 2627 aaKnown RBP4.44□□□□□ -1.7
YBX3-208ENST00000540447 MAST4O15021 2626 aa4.44□□□□□ -1.7
YBX3-208ENST00000540447 UBR5O95071 2799 aaPredicted RBP4.43□□□□□ -1.7
YBX3-208ENST00000540447 KRTAP12-1P59990 96 aa4.43□□□□□ -1.7
YBX3-208ENST00000540447 KRTAP13-4Q3LI77 160 aa4.42□□□□□ -1.7
YBX3-208ENST00000540447 APCP25054 2843 aa4.41□□□□□ -1.7
YBX3-208ENST00000540447 LRBAP50851 2863 aa4.41□□□□□ -1.7
YBX3-208ENST00000540447 NSD1Q96L73 2696 aaPredicted RBP4.4□□□□□ -1.7
YBX3-208ENST00000540447 KALRNO60229 2985 aa4.39□□□□□ -1.71
YBX3-208ENST00000540447 RELNP78509 3460 aa4.38□□□□□ -1.71
YBX3-208ENST00000540447 ADGRG4Q8IZF6 3080 aa4.38□□□□□ -1.71
YBX3-208ENST00000540447 KRTAP1-4P0C5Y4 121 aa4.38□□□□□ -1.71
YBX3-208ENST00000540447 XP32Q5T750 250 aa4.36□□□□□ -1.71
YBX3-208ENST00000540447 NBEAQ8NFP9 2946 aa4.35□□□□□ -1.71
YBX3-208ENST00000540447 TEX15Q9BXT5 2789 aa4.34□□□□□ -1.71
YBX3-208ENST00000540447 IGSF10Q6WRI0 2623 aa4.34□□□□□ -1.71
YBX3-208ENST00000540447 FLNCQ14315 2725 aa4.34□□□□□ -1.72
YBX3-208ENST00000540447 TACC2O95359 2948 aa4.33□□□□□ -1.72
YBX3-208ENST00000540447 ZFHX4Q86UP3 3567 aa4.33□□□□□ -1.72
YBX3-208ENST00000540447 SMG1Q96Q15 3661 aaKnown RBP4.32□□□□□ -1.72
YBX3-208ENST00000540447 ASH1LQ9NR48 2969 aaKnown RBP4.32□□□□□ -1.72
YBX3-208ENST00000540447 SETXQ7Z333 2677 aaKnown RBP4.32□□□□□ -1.72
YBX3-208ENST00000540447 UTP20O75691 2785 aaKnown RBP4.29□□□□□ -1.72
YBX3-208ENST00000540447 A0A1B0GVY2 172 aa4.27□□□□□ -1.73
YBX3-208ENST00000540447 TGP01266 2768 aa4.26□□□□□ -1.73
YBX3-208ENST00000540447 KRTAP3-1Q9BYR8 98 aa4.26□□□□□ -1.73
YBX3-208ENST00000540447 CRYBG3Q68DQ2 2970 aa4.25□□□□□ -1.73
YBX3-208ENST00000540447 KRTAP10-6P60371 365 aaPredicted RBP4.23□□□□□ -1.73
YBX3-208ENST00000540447 ITPR2Q14571 2701 aa4.19□□□□□ -1.74
YBX3-208ENST00000540447 HIVEP1P15822 2718 aa4.16□□□□□ -1.74
YBX3-208ENST00000540447 CELSR2Q9HCU4 2923 aa4.13□□□□□ -1.75
YBX3-208ENST00000540447 ZANQ9Y493 2812 aa4.13□□□□□ -1.75
YBX3-208ENST00000540447 DCHS2Q6V1P9 2916 aa4.13□□□□□ -1.75
YBX3-208ENST00000540447 KRTAP10-10P60014 251 aa4.11□□□□□ -1.75
YBX3-208ENST00000540447 CUBNO60494 3623 aa4.11□□□□□ -1.75
YBX3-208ENST00000540447 SVEP1Q4LDE5 3571 aa4.09□□□□□ -1.75
YBX3-208ENST00000540447 KRTAP23-1A1A580 65 aa4.08□□□□□ -1.76
YBX3-208ENST00000540447 CSMD1Q96PZ7 3565 aa4.08□□□□□ -1.76
YBX3-208ENST00000540447 NIPBLQ6KC79 2804 aaeCLIP4.07□□□□□ -1.76
YBX3-208ENST00000540447 SPENQ96T58 3664 aaKnown RBP4.05□□□□□ -1.76
YBX3-208ENST00000540447 KMT2BQ9UMN6 2715 aaPredicted RBP4.05□□□□□ -1.76
YBX3-208ENST00000540447 KRTAP3-2Q9BYR7 98 aa4.05□□□□□ -1.76
YBX3-208ENST00000540447 CSMD2Q7Z408 3487 aa4.05□□□□□ -1.76
YBX3-208ENST00000540447 ZFHX3Q15911 3703 aa4.04□□□□□ -1.76
YBX3-208ENST00000540447 NF1P21359 2839 aa4.03□□□□□ -1.76
YBX3-208ENST00000540447 CELSR1Q9NYQ6 3014 aa4.01□□□□□ -1.77
YBX3-208ENST00000540447 NBPF19A0A087WUL8 3843 aa4.01□□□□□ -1.77
YBX3-208ENST00000540447 FBN2P35556 2912 aa3.99□□□□□ -1.77
YBX3-208ENST00000540447 TENM2Q9NT68 2774 aa3.99□□□□□ -1.77
YBX3-208ENST00000540447 TENM4Q6N022 2769 aa3.99□□□□□ -1.77
YBX3-208ENST00000540447 SRRM2Q9UQ35 2752 aaKnown RBP3.98□□□□□ -1.77
YBX3-208ENST00000540447 HRNRQ86YZ3 2850 aaPredicted RBP3.98□□□□□ -1.77
YBX3-208ENST00000540447 KRTAP3-3Q9BYR6 98 aa3.96□□□□□ -1.78
YBX3-208ENST00000540447 TENM3Q9P273 2699 aa3.95□□□□□ -1.78
YBX3-208ENST00000540447 TENM1Q9UKZ4 2725 aa3.92□□□□□ -1.78
YBX3-208ENST00000540447 PDZD2O15018 2839 aa3.91□□□□□ -1.78
YBX3-208ENST00000540447 BSNQ9UPA5 3926 aa3.9□□□□□ -1.78
YBX3-208ENST00000540447 KRTAP21-3Q3LHN1 58 aa3.89□□□□□ -1.79
YBX3-208ENST00000540447 OTOGQ6ZRI0 2925 aa3.89□□□□□ -1.79
YBX3-208ENST00000540447 MXRA5Q9NR99 2828 aa3.88□□□□□ -1.79
YBX3-208ENST00000540447 FBN1P35555 2871 aaKnown RBP3.85□□□□□ -1.79
YBX3-208ENST00000540447 VPS13CQ709C8 3753 aa3.83□□□□□ -1.8
YBX3-208ENST00000540447 KRTAP12-3P60328 96 aa3.81□□□□□ -1.8
YBX3-208ENST00000540447 KRTAP10-12P60413 245 aa3.8□□□□□ -1.8
YBX3-208ENST00000540447 LCE3AQ5TA76 89 aa3.78□□□□□ -1.8
YBX3-208ENST00000540447 PKD1L1Q8TDX9 2849 aa3.75□□□□□ -1.81
YBX3-208ENST00000540447 VWFP04275 2813 aa3.74□□□□□ -1.81
YBX3-208ENST00000540447 CRCT1Q9UGL9 99 aa3.72□□□□□ -1.81
YBX3-208ENST00000540447 ZNF469Q96JG9 3925 aaPredicted RBP3.7□□□□□ -1.82
YBX3-208ENST00000540447 KRTAP10-5P60370 271 aa3.68□□□□□ -1.82
YBX3-208ENST00000540447 TRRAPQ9Y4A5 3859 aa3.66□□□□□ -1.82
YBX3-208ENST00000540447 MEGF8Q7Z7M0 2845 aa3.65□□□□□ -1.82
YBX3-208ENST00000540447 LORP23490 312 aaPredicted RBP3.63□□□□□ -1.83
YBX3-208ENST00000540447 FBN3Q75N90 2809 aa3.59□□□□□ -1.83
YBX3-208ENST00000540447 COL7A1Q02388 2944 aa3.57□□□□□ -1.84
YBX3-208ENST00000540447 ALMS1Q8TCU4 4167 aa3.56□□□□□ -1.84
YBX3-208ENST00000540447 ANK3Q12955 4377 aaKnown RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 167.7 ms