RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 KRTAP9-8Q9BYQ0 159 aa2.56□□□□□ -2
USH1C-210ENST00000534556 A0A1B0GVX0 72 aa2.55□□□□□ -2
USH1C-210ENST00000534556 KRTAP9-1A8MXZ3 250 aaPredicted RBP2.55□□□□□ -2
USH1C-210ENST00000534556 C9JAW5 83 aa2.55□□□□□ -2
USH1C-210ENST00000534556 ATXN8Q156A1 80 aa2.55□□□□□ -2
USH1C-210ENST00000534556 BATFQ16520 125 aa2.55□□□□□ -2
USH1C-210ENST00000534556 COX6B2Q6YFQ2 88 aa2.55□□□□□ -2
USH1C-210ENST00000534556 C14orf132Q9NPU4 83 aa2.55□□□□□ -2
USH1C-210ENST00000534556 SSPOA2VEC9 5147 aa2.55□□□□□ -2
USH1C-210ENST00000534556 LOC110117498A0A087WWA1 95 aa2.54□□□□□ -2
USH1C-210ENST00000534556 IGKV3D-7A0A0C4DH55 119 aa2.54□□□□□ -2
USH1C-210ENST00000534556 C9orf118A6NHY6 69 aa2.54□□□□□ -2
USH1C-210ENST00000534556 SMCPP49901 116 aaPredicted RBP2.54□□□□□ -2
USH1C-210ENST00000534556 DSCR8Q96T75 97 aa2.54□□□□□ -2
USH1C-210ENST00000534556 USH2AO75445 5202 aa2.53□□□□□ -2
USH1C-210ENST00000534556 A0A1W2PPM0 123 aa2.53□□□□□ -2
USH1C-210ENST00000534556 TSTD3H0UI37 97 aa2.53□□□□□ -2
USH1C-210ENST00000534556 M0R2T5 61 aa2.53□□□□□ -2
USH1C-210ENST00000534556 Q8N9P0 234 aaPredicted RBP2.52□□□□□ -2.01
USH1C-210ENST00000534556 FCGBPQ9Y6R7 5405 aaPredicted RBP2.51□□□□□ -2.01
USH1C-210ENST00000534556 TRBV20-1A0A075B6N2 111 aa2.51□□□□□ -2.01
USH1C-210ENST00000534556 C8orf87E5RJ46 101 aa2.51□□□□□ -2.01
USH1C-210ENST00000534556 JMJD7-PLA2G4BH0Y9G9 81 aa2.51□□□□□ -2.01
USH1C-210ENST00000534556 MT2AP02795 61 aa2.51□□□□□ -2.01
USH1C-210ENST00000534556 C8orf17Q9NRJ1 99 aa2.51□□□□□ -2.01
USH1C-210ENST00000534556 MMP24-AS1A0A0U1RRL7 71 aa2.5□□□□□ -2.01
USH1C-210ENST00000534556 A8MWP4 228 aa2.5□□□□□ -2.01
USH1C-210ENST00000534556 ZCCHC13Q8WW36 166 aaKnown RBP2.5□□□□□ -2.01
USH1C-210ENST00000534556 PRO0461Q9UI25 63 aa2.5□□□□□ -2.01
USH1C-210ENST00000534556 H3BT86 120 aa2.49□□□□□ -2.01
USH1C-210ENST00000534556 J3KT08 172 aa2.49□□□□□ -2.01
USH1C-210ENST00000534556 K7EQZ3 153 aa2.49□□□□□ -2.01
USH1C-210ENST00000534556 MT1FP04733 61 aa2.49□□□□□ -2.01
USH1C-210ENST00000534556 PRR15Q8IV56 129 aa2.49□□□□□ -2.01
USH1C-210ENST00000534556 A0A1B0GW54 56 aa2.48□□□□□ -2.01
USH1C-210ENST00000534556 LCE2BO14633 110 aa2.48□□□□□ -2.01
USH1C-210ENST00000534556 SPINK7P58062 85 aa2.48□□□□□ -2.01
USH1C-210ENST00000534556 Q5W150 140 aa2.48□□□□□ -2.01
USH1C-210ENST00000534556 Q8N9L7 120 aa2.48□□□□□ -2.01
USH1C-210ENST00000534556 PDE6GP18545 87 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 NREPQ16612 68 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 LYRM7Q5U5X0 104 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 Q6ZVQ6 151 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 KRTAP9-3Q9BYQ3 159 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 SPCS1Q9Y6A9 102 aa2.47□□□□□ -2.01
USH1C-210ENST00000534556 BPY2O14599 106 aa2.46□□□□□ -2.02
USH1C-210ENST00000534556 NDUFB1O75438 58 aa2.46□□□□□ -2.02
USH1C-210ENST00000534556 C21orf62-AS1Q17RA5 79 aa2.46□□□□□ -2.02
USH1C-210ENST00000534556 TMEM254Q8TBM7 123 aa2.46□□□□□ -2.02
USH1C-210ENST00000534556 MRPL34Q9BQ48 92 aaKnown RBP2.46□□□□□ -2.02
USH1C-210ENST00000534556 FAM236DA0A1B0GTK5 79 aa2.45□□□□□ -2.02
USH1C-210ENST00000534556 K7EP34 96 aa2.45□□□□□ -2.02
USH1C-210ENST00000534556 FAM236CP0DP71 79 aa2.45□□□□□ -2.02
USH1C-210ENST00000534556 LINC00846Q9NV44 126 aa2.45□□□□□ -2.02
USH1C-210ENST00000534556 MACF1Q9UPN3 7388 aaKnown RBP2.45□□□□□ -2.02
USH1C-210ENST00000534556 hDV103S1A0JD37 113 aa2.44□□□□□ -2.02
USH1C-210ENST00000534556 COL5A1-AS1Q5SY13 56 aa2.44□□□□□ -2.02
USH1C-210ENST00000534556 WFDC13Q8IUB5 93 aa2.44□□□□□ -2.02
USH1C-210ENST00000534556 RBM12B-AS1Q9P1G2 102 aa2.44□□□□□ -2.02
USH1C-210ENST00000534556 PCP4L1A6NKN8 68 aa2.43□□□□□ -2.02
USH1C-210ENST00000534556 SYNE2Q8WXH0 6885 aaKnown RBP2.42□□□□□ -2.02
USH1C-210ENST00000534556 KRTAP10-10P60014 251 aa2.42□□□□□ -2.02
USH1C-210ENST00000534556 KRTAP3-1Q9BYR8 98 aa2.41□□□□□ -2.02
USH1C-210ENST00000534556 IGKV2D-30A0A075B6S6 120 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 HCG22E2RYF7 251 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 NDUFS5O43920 106 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 IGKV2-30P06310 120 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 ETDBQ3ZM63 59 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 CASC2Q6XLA1 102 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 KRTAP19-1Q8IUB9 90 aa2.4□□□□□ -2.03
USH1C-210ENST00000534556 C4orf26Q17RF5 130 aa2.38□□□□□ -2.03
USH1C-210ENST00000534556 H1FX-AS1Q4G0G2 97 aa2.38□□□□□ -2.03
USH1C-210ENST00000534556 MUC12Q9UKN1 5478 aa2.37□□□□□ -2.03
USH1C-210ENST00000534556 F8W1H4 67 aa2.37□□□□□ -2.03
USH1C-210ENST00000534556 C7orf65Q6ZTY9 151 aa2.37□□□□□ -2.03
USH1C-210ENST00000534556 UBL5Q9BZL1 73 aa2.37□□□□□ -2.03
USH1C-210ENST00000534556 GTF2H5Q6ZYL4 71 aa2.36□□□□□ -2.03
USH1C-210ENST00000534556 NEBP20929 6669 aa2.35□□□□□ -2.03
USH1C-210ENST00000534556 A0A087WVE0 104 aa2.35□□□□□ -2.03
USH1C-210ENST00000534556 CXCL6P80162 114 aa2.35□□□□□ -2.03
USH1C-210ENST00000534556 KRTAP19-6Q3LI70 58 aa2.34□□□□□ -2.03
USH1C-210ENST00000534556 KRTAP3-3Q9BYR6 98 aa2.34□□□□□ -2.03
USH1C-210ENST00000534556 A0A1B0GV90 55 aa2.32□□□□□ -2.04
USH1C-210ENST00000534556 C5orf47Q569G3 176 aa2.32□□□□□ -2.04
USH1C-210ENST00000534556 LCA10Q71F78 164 aa2.32□□□□□ -2.04
USH1C-210ENST00000534556 C1orf64Q8NEQ6 169 aa2.32□□□□□ -2.04
USH1C-210ENST00000534556 MT1BP07438 61 aa2.31□□□□□ -2.04
USH1C-210ENST00000534556 CYP4F30PQ9H0H9 118 aa2.31□□□□□ -2.04
USH1C-210ENST00000534556 FAM240AA0A1B0GVK7 77 aa2.29□□□□□ -2.04
USH1C-210ENST00000534556 TP53AIP1Q9HCN2 124 aa2.29□□□□□ -2.04
USH1C-210ENST00000534556 S4R3F8 94 aa2.29□□□□□ -2.04
USH1C-210ENST00000534556 ACYP1P07311 99 aa2.28□□□□□ -2.04
USH1C-210ENST00000534556 MDN1Q9NU22 5596 aa2.27□□□□□ -2.05
USH1C-210ENST00000534556 TRAV22A0A0B4J277 110 aa2.27□□□□□ -2.05
USH1C-210ENST00000534556 KLKP1Q107X0 134 aa2.27□□□□□ -2.05
USH1C-210ENST00000534556 KRTAP19-8Q3LI54 63 aa2.27□□□□□ -2.05
USH1C-210ENST00000534556 SPRR2GQ9BYE4 73 aa2.27□□□□□ -2.05
USH1C-210ENST00000534556 H0Y9P7 68 aa2.26□□□□□ -2.05
USH1C-210ENST00000534556 HIST1H4AP62805 103 aaKnown RBP2.26□□□□□ -2.05
USH1C-210ENST00000534556 KRTAP20-1Q3LI63 56 aa2.25□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms