RNA–Protein interactions for RNA: ENST00000529986.5

CTNND1-223, Transcript of catenin delta 1, human

TSL 1 (best) BASIC

Gene CTNND1, Length 5,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-223	ENST00000529986	DMXL2	Q8TDJ6	3036 aa		4.3	□□□□□ -1.72
CTNND1-223	ENST00000529986	DMD	P11532	3685 aa		4.3	□□□□□ -1.72
CTNND1-223	ENST00000529986	ITPR1	Q14643	2758 aa		4.29	□□□□□ -1.72
CTNND1-223	ENST00000529986	UBR5	O95071	2799 aa	Predicted RBP	4.28	□□□□□ -1.72
CTNND1-223	ENST00000529986	FRYL	O94915	3013 aa		4.28	□□□□□ -1.72
CTNND1-223	ENST00000529986	WDFY3	Q8IZQ1	3526 aa		4.28	□□□□□ -1.72
CTNND1-223	ENST00000529986	C10orf95	Q9H7T3	257 aa		4.27	□□□□□ -1.73
CTNND1-223	ENST00000529986	KRTAP13-2	Q52LG2	175 aa		4.25	□□□□□ -1.73
CTNND1-223	ENST00000529986	ATM	Q13315	3056 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	COL12A1	Q99715	3063 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986		Q6ZRN7	208 aa	Predicted RBP	4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	FLNC	Q14315	2725 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	TACC2	O95359	2948 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	APC	P25054	2843 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	KRTAP13-1	Q8IUC0	172 aa		4.22	□□□□□ -1.73
CTNND1-223	ENST00000529986	ASPM	Q8IZT6	3477 aa		4.21	□□□□□ -1.74
CTNND1-223	ENST00000529986	LRBA	P50851	2863 aa		4.2	□□□□□ -1.74
CTNND1-223	ENST00000529986	CFAP47	Q6ZTR5	3102 aa		4.19	□□□□□ -1.74
CTNND1-223	ENST00000529986	ITPR2	Q14571	2701 aa		4.19	□□□□□ -1.74
CTNND1-223	ENST00000529986	BOD1L1	Q8NFC6	3051 aa		4.18	□□□□□ -1.74
CTNND1-223	ENST00000529986	HIVEP1	P15822	2718 aa		4.18	□□□□□ -1.74
CTNND1-223	ENST00000529986	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.17	□□□□□ -1.74
CTNND1-223	ENST00000529986	RPS29	P62273	56 aa	Known RBP	4.16	□□□□□ -1.74
CTNND1-223	ENST00000529986		H0YAA0	97 aa		4.16	□□□□□ -1.74
CTNND1-223	ENST00000529986	ADGRG4	Q8IZF6	3080 aa		4.16	□□□□□ -1.74
CTNND1-223	ENST00000529986	DMXL1	Q9Y485	3027 aa		4.15	□□□□□ -1.74
CTNND1-223	ENST00000529986	UTP20	O75691	2785 aa	Known RBP	4.15	□□□□□ -1.75
CTNND1-223	ENST00000529986	CRYBG3	Q68DQ2	2970 aa		4.15	□□□□□ -1.75
CTNND1-223	ENST00000529986	TNP1	P09430	55 aa		4.14	□□□□□ -1.75
CTNND1-223	ENST00000529986	MUC3A	Q02505	3323 aa		4.14	□□□□□ -1.75
CTNND1-223	ENST00000529986	ZFHX4	Q86UP3	3567 aa		4.13	□□□□□ -1.75
CTNND1-223	ENST00000529986	TENM4	Q6N022	2769 aa		4.11	□□□□□ -1.75
CTNND1-223	ENST00000529986	LAMA5	O15230	3695 aa		4.1	□□□□□ -1.75
CTNND1-223	ENST00000529986	KRTAP10-8	P60410	259 aa		4.1	□□□□□ -1.75
CTNND1-223	ENST00000529986	PP632	Q6XCG6	107 aa		4.1	□□□□□ -1.75
CTNND1-223	ENST00000529986		P0C880	135 aa		4.09	□□□□□ -1.75
CTNND1-223	ENST00000529986	ZZEF1	O43149	2961 aa		4.09	□□□□□ -1.76
CTNND1-223	ENST00000529986	CELSR2	Q9HCU4	2923 aa		4.09	□□□□□ -1.76
CTNND1-223	ENST00000529986	HRNR	Q86YZ3	2850 aa	Predicted RBP	4.05	□□□□□ -1.76
CTNND1-223	ENST00000529986	LOC400499	M0QZD8	3231 aa		4.02	□□□□□ -1.77
CTNND1-223	ENST00000529986	DCHS1	Q96JQ0	3298 aa		4.02	□□□□□ -1.77
CTNND1-223	ENST00000529986		A0A1B0GVY2	172 aa		4	□□□□□ -1.77
CTNND1-223	ENST00000529986	DCHS2	Q6V1P9	2916 aa		4	□□□□□ -1.77
CTNND1-223	ENST00000529986	KRTAP1-4	P0C5Y4	121 aa		3.98	□□□□□ -1.77
CTNND1-223	ENST00000529986	XP32	Q5T750	250 aa		3.97	□□□□□ -1.77
CTNND1-223	ENST00000529986	NIPBL	Q6KC79	2804 aa	eCLIP	3.97	□□□□□ -1.77	1e-6	■□□□□ 9
CTNND1-223	ENST00000529986	SMG1	Q96Q15	3661 aa	Known RBP	3.96	□□□□□ -1.78
CTNND1-223	ENST00000529986	RELN	P78509	3460 aa		3.95	□□□□□ -1.78
CTNND1-223	ENST00000529986	ZAN	Q9Y493	2812 aa		3.93	□□□□□ -1.78
CTNND1-223	ENST00000529986	SPEN	Q96T58	3664 aa	Known RBP	3.93	□□□□□ -1.78
CTNND1-223	ENST00000529986	TG	P01266	2768 aa		3.93	□□□□□ -1.78
CTNND1-223	ENST00000529986	FBN2	P35556	2912 aa		3.91	□□□□□ -1.78
CTNND1-223	ENST00000529986	CSMD1	Q96PZ7	3565 aa		3.9	□□□□□ -1.79
CTNND1-223	ENST00000529986	NF1	P21359	2839 aa		3.89	□□□□□ -1.79
CTNND1-223	ENST00000529986	KRTAP12-2	P59991	146 aa		3.89	□□□□□ -1.79
CTNND1-223	ENST00000529986	SVEP1	Q4LDE5	3571 aa		3.88	□□□□□ -1.79
CTNND1-223	ENST00000529986	TPRXL	Q17RH7	258 aa		3.87	□□□□□ -1.79
CTNND1-223	ENST00000529986	KRTAP13-3	Q3SY46	172 aa		3.87	□□□□□ -1.79
CTNND1-223	ENST00000529986	TENM3	Q9P273	2699 aa		3.87	□□□□□ -1.79
CTNND1-223	ENST00000529986	CELSR1	Q9NYQ6	3014 aa		3.83	□□□□□ -1.8
CTNND1-223	ENST00000529986	TENM1	Q9UKZ4	2725 aa		3.82	□□□□□ -1.8
CTNND1-223	ENST00000529986	KRTAP10-10	P60014	251 aa		3.82	□□□□□ -1.8
CTNND1-223	ENST00000529986	MXRA5	Q9NR99	2828 aa		3.8	□□□□□ -1.8
CTNND1-223	ENST00000529986	NBPF19	A0A087WUL8	3843 aa		3.8	□□□□□ -1.8
CTNND1-223	ENST00000529986	PRO2289	Q9P1D8	64 aa		3.8	□□□□□ -1.8
CTNND1-223	ENST00000529986	TENM2	Q9NT68	2774 aa		3.8	□□□□□ -1.8
CTNND1-223	ENST00000529986	PDZD2	O15018	2839 aa		3.79	□□□□□ -1.8
CTNND1-223	ENST00000529986	BSN	Q9UPA5	3926 aa		3.78	□□□□□ -1.8
CTNND1-223	ENST00000529986	ZFHX3	Q15911	3703 aa		3.78	□□□□□ -1.8
CTNND1-223	ENST00000529986	KRTAP12-1	P59990	96 aa		3.77	□□□□□ -1.81
CTNND1-223	ENST00000529986	INE1	O15225	51 aa		3.77	□□□□□ -1.81
CTNND1-223	ENST00000529986	PKD1L1	Q8TDX9	2849 aa		3.76	□□□□□ -1.81
CTNND1-223	ENST00000529986	ANK3	Q12955	4377 aa	Known RBP	3.76	□□□□□ -1.81
CTNND1-223	ENST00000529986	VPS13C	Q709C8	3753 aa		3.74	□□□□□ -1.81
CTNND1-223	ENST00000529986	CSMD2	Q7Z408	3487 aa		3.74	□□□□□ -1.81
CTNND1-223	ENST00000529986	KRTAP13-4	Q3LI77	160 aa		3.73	□□□□□ -1.81
CTNND1-223	ENST00000529986	KRTAP3-1	Q9BYR8	98 aa		3.73	□□□□□ -1.81
CTNND1-223	ENST00000529986	VWF	P04275	2813 aa		3.71	□□□□□ -1.82
CTNND1-223	ENST00000529986	CUBN	O60494	3623 aa		3.71	□□□□□ -1.82
CTNND1-223	ENST00000529986	OTOG	Q6ZRI0	2925 aa		3.7	□□□□□ -1.82
CTNND1-223	ENST00000529986	KRTAP15-1	Q3LI76	137 aa		3.65	□□□□□ -1.83
CTNND1-223	ENST00000529986	KRTAP10-6	P60371	365 aa	Predicted RBP	3.64	□□□□□ -1.83
CTNND1-223	ENST00000529986	FBN1	P35555	2871 aa	Known RBP	3.63	□□□□□ -1.83
CTNND1-223	ENST00000529986	SRRM2	Q9UQ35	2752 aa	Known RBP	3.57	□□□□□ -1.84
CTNND1-223	ENST00000529986	FBN3	Q75N90	2809 aa		3.53	□□□□□ -1.84
CTNND1-223	ENST00000529986	HUWE1	Q7Z6Z7	4374 aa	Known RBP	3.53	□□□□□ -1.84
CTNND1-223	ENST00000529986	MEGF8	Q7Z7M0	2845 aa		3.52	□□□□□ -1.85
CTNND1-223	ENST00000529986	ALMS1	Q8TCU4	4167 aa		3.5	□□□□□ -1.85
CTNND1-223	ENST00000529986	KRTAP3-2	Q9BYR7	98 aa		3.49	□□□□□ -1.85
CTNND1-223	ENST00000529986	KRTAP23-1	A1A580	65 aa		3.47	□□□□□ -1.85
CTNND1-223	ENST00000529986	ZNF469	Q96JG9	3925 aa	Predicted RBP	3.47	□□□□□ -1.85
CTNND1-223	ENST00000529986	KRTAP3-3	Q9BYR6	98 aa		3.46	□□□□□ -1.86
CTNND1-223	ENST00000529986	COL7A1	Q02388	2944 aa		3.45	□□□□□ -1.86
CTNND1-223	ENST00000529986	TRRAP	Q9Y4A5	3859 aa		3.44	□□□□□ -1.86
CTNND1-223	ENST00000529986	CRCT1	Q9UGL9	99 aa		3.43	□□□□□ -1.86
CTNND1-223	ENST00000529986	AKAP9	Q99996	3911 aa		3.43	□□□□□ -1.86
CTNND1-223	ENST00000529986	KRTAP10-4	P60372	401 aa	Predicted RBP	3.4	□□□□□ -1.86
CTNND1-223	ENST00000529986	MT1HL1	P0DM35	61 aa		3.4	□□□□□ -1.87
CTNND1-223	ENST00000529986	KRTAP10-12	P60413	245 aa		3.36	□□□□□ -1.87
CTNND1-223	ENST00000529986	DNAH9	Q9NYC9	4486 aa		3.36	□□□□□ -1.87

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