RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 LOC400499M0QZD8 3231 aa1.68□□□□□ -2.14
USP47-204ENST00000525078 HELZ2Q9BYK8 2649 aaKnown RBP1.68□□□□□ -2.14
USP47-204ENST00000525078 LINC01556Q5JQF7 62 aa1.68□□□□□ -2.14
USP47-204ENST00000525078 NCOR1O75376 2440 aa1.68□□□□□ -2.14
USP47-204ENST00000525078 A0A096LPF7 62 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 MMP24-AS1A0A0U1RRL7 71 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 DEFB130BP0DP73 79 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 DEFB130AP0DP74 79 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 KRTAP5-7Q6L8G8 165 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 PTPRZ1P23471 2315 aaPredicted RBP1.67□□□□□ -2.14
USP47-204ENST00000525078 MUC6Q6W4X9 2439 aa1.67□□□□□ -2.14
USP47-204ENST00000525078 BSNQ9UPA5 3926 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 BOD1L1Q8NFC6 3051 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 TLN1Q9Y490 2541 aaKnown RBP1.66□□□□□ -2.14
USP47-204ENST00000525078 CELSR1Q9NYQ6 3014 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 SPART-AS1P0CW21 52 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 DMDP11532 3685 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 HIVEP3Q5T1R4 2406 aa1.66□□□□□ -2.14
USP47-204ENST00000525078 SPTAN1Q13813 2472 aaKnown RBP1.65□□□□□ -2.14
USP47-204ENST00000525078 WFDC13Q8IUB5 93 aa1.65□□□□□ -2.15
USP47-204ENST00000525078 LRBAP50851 2863 aa1.65□□□□□ -2.15
USP47-204ENST00000525078 SMG1Q96Q15 3661 aaKnown RBP1.64□□□□□ -2.15
USP47-204ENST00000525078 MAP1AP78559 2803 aaPredicted RBP1.64□□□□□ -2.15
USP47-204ENST00000525078 CREBBPQ92793 2442 aa1.64□□□□□ -2.15
USP47-204ENST00000525078 WFDC10BQ8IUB3 73 aa1.64□□□□□ -2.15
USP47-204ENST00000525078 DEFB105AQ8NG35 78 aa1.64□□□□□ -2.15
USP47-204ENST00000525078 AKAP6Q13023 2319 aa1.64□□□□□ -2.15
USP47-204ENST00000525078 DMXL1Q9Y485 3027 aa1.64□□□□□ -2.15
USP47-204ENST00000525078 CELSR2Q9HCU4 2923 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 ZFHX4Q86UP3 3567 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 ZNF292O60281 2723 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 SPTA1P02549 2419 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 CSMD1Q96PZ7 3565 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 ATMQ13315 3056 aa1.63□□□□□ -2.15
USP47-204ENST00000525078 MRPL34Q9BQ48 92 aaKnown RBP1.62□□□□□ -2.15
USP47-204ENST00000525078 BDP1A6H8Y1 2624 aa1.62□□□□□ -2.15
USP47-204ENST00000525078 NBASA2RRP1 2371 aa1.62□□□□□ -2.15
USP47-204ENST00000525078 ZNF462Q96JM2 2506 aa1.62□□□□□ -2.15
USP47-204ENST00000525078 DOPEY1Q5JWR5 2465 aa1.61□□□□□ -2.15
USP47-204ENST00000525078 C2CD3Q4AC94 2353 aa1.61□□□□□ -2.15
USP47-204ENST00000525078 DEFB135Q30KP9 77 aa1.61□□□□□ -2.15
USP47-204ENST00000525078 CEP295Q9C0D2 2601 aa1.61□□□□□ -2.15
USP47-204ENST00000525078 CSPG4Q6UVK1 2322 aa1.61□□□□□ -2.15
USP47-204ENST00000525078 SETXQ7Z333 2677 aaKnown RBP1.6□□□□□ -2.15
USP47-204ENST00000525078 NCOR2Q9Y618 2525 aa1.6□□□□□ -2.15
USP47-204ENST00000525078 ASPMQ8IZT6 3477 aa1.6□□□□□ -2.15
USP47-204ENST00000525078 TLN2Q9Y4G6 2542 aa1.6□□□□□ -2.15
USP47-204ENST00000525078 RELNP78509 3460 aa1.59□□□□□ -2.16
USP47-204ENST00000525078 GVINP1Q7Z2Y8 2422 aa1.58□□□□□ -2.16
USP47-204ENST00000525078 CHD6Q8TD26 2715 aa1.58□□□□□ -2.16
USP47-204ENST00000525078 COL12A1Q99715 3063 aa1.58□□□□□ -2.16
USP47-204ENST00000525078 CRYBG3Q68DQ2 2970 aa1.57□□□□□ -2.16
USP47-204ENST00000525078 MXRA5Q9NR99 2828 aa1.57□□□□□ -2.16
USP47-204ENST00000525078 MYO9AB2RTY4 2548 aa1.57□□□□□ -2.16
USP47-204ENST00000525078 HTN3P15516 51 aa1.57□□□□□ -2.16
USP47-204ENST00000525078 PRLHP81277 87 aa1.57□□□□□ -2.16
USP47-204ENST00000525078 ITPR1Q14643 2758 aa1.56□□□□□ -2.16
USP47-204ENST00000525078 MUC3AQ02505 3323 aa1.56□□□□□ -2.16
USP47-204ENST00000525078 A0A096LNI7 61 aa1.56□□□□□ -2.16
USP47-204ENST00000525078 DEFB4AO15263 64 aa1.56□□□□□ -2.16
USP47-204ENST00000525078 SPG11Q96JI7 2443 aa1.56□□□□□ -2.16
USP47-204ENST00000525078 SPTBN4Q9H254 2564 aa1.55□□□□□ -2.16
USP47-204ENST00000525078 UTP20O75691 2785 aaKnown RBP1.55□□□□□ -2.16
USP47-204ENST00000525078 TENM2Q9NT68 2774 aa1.55□□□□□ -2.16
USP47-204ENST00000525078 APCP25054 2843 aa1.55□□□□□ -2.16
USP47-204ENST00000525078 SVEP1Q4LDE5 3571 aa1.54□□□□□ -2.16
USP47-204ENST00000525078 ALMS1Q8TCU4 4167 aa1.54□□□□□ -2.16
USP47-204ENST00000525078 PTPN13Q12923 2485 aa1.54□□□□□ -2.16
USP47-204ENST00000525078 Q5VSD8 79 aa1.54□□□□□ -2.16
USP47-204ENST00000525078 VPS13CQ709C8 3753 aa1.53□□□□□ -2.16
USP47-204ENST00000525078 NAV2Q8IVL1 2488 aa1.53□□□□□ -2.16
USP47-204ENST00000525078 APLNQ9ULZ1 77 aa1.53□□□□□ -2.16
USP47-204ENST00000525078 RIF1Q5UIP0 2472 aaKnown RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 FBN2P35556 2912 aa1.52□□□□□ -2.17
USP47-204ENST00000525078 ZANQ9Y493 2812 aa1.52□□□□□ -2.17
USP47-204ENST00000525078 GCN1Q92616 2671 aaKnown RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 USP9YO00507 2555 aaPredicted RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 USP9XQ93008 2570 aaPredicted RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 COX6B2Q6YFQ2 88 aa1.52□□□□□ -2.17
USP47-204ENST00000525078 LRRK2Q5S007 2527 aa1.52□□□□□ -2.17
USP47-204ENST00000525078 UBR5O95071 2799 aaPredicted RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 ANK3Q12955 4377 aaKnown RBP1.52□□□□□ -2.17
USP47-204ENST00000525078 IGF2RP11717 2491 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 TTC28Q96AY4 2481 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 ITPR3Q14573 2671 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 AKAP9Q99996 3911 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 EPG5Q9HCE0 2579 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 H0YAA0 97 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 ZFYVE26Q68DK2 2539 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 TEX15Q9BXT5 2789 aa1.51□□□□□ -2.17
USP47-204ENST00000525078 LAMA5O15230 3695 aa1.5□□□□□ -2.17
USP47-204ENST00000525078 NBPF19A0A087WUL8 3843 aa1.5□□□□□ -2.17
USP47-204ENST00000525078 RPS29P62273 56 aaKnown RBP1.5□□□□□ -2.17
USP47-204ENST00000525078 HIVEP1P15822 2718 aa1.5□□□□□ -2.17
USP47-204ENST00000525078 DNAH1Q9P2D7 4330 aa1.49□□□□□ -2.17
USP47-204ENST00000525078 KRTAP21-2Q3LI59 83 aa1.49□□□□□ -2.17
USP47-204ENST00000525078 PIEZO1Q92508 2521 aa1.49□□□□□ -2.17
USP47-204ENST00000525078 CFAP46Q8IYW2 2715 aa1.49□□□□□ -2.17
USP47-204ENST00000525078 OTOGQ6ZRI0 2925 aa1.49□□□□□ -2.17
USP47-204ENST00000525078 NF1P21359 2839 aa1.48□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 47.9 ms