RNA–Protein interactions for RNA: ENST00000514142.5

PDLIM3-209, Transcript of PDZ and LIM domain 3, humanhuman

TSL 1 (best)

Gene PDLIM3, Length 5,137 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3-209ENST00000514142 ASH1LQ9NR48 2969 aaKnown RBP6.08□□□□□ -1.44
PDLIM3-209ENST00000514142 PANO1I0J062 215 aa6.08□□□□□ -1.44
PDLIM3-209ENST00000514142 ZANQ9Y493 2812 aa6.07□□□□□ -1.44
PDLIM3-209ENST00000514142 KRTAP25-1Q3LHN0 102 aa6.07□□□□□ -1.44
PDLIM3-209ENST00000514142 UTP20O75691 2785 aaKnown RBP6.07□□□□□ -1.44
PDLIM3-209ENST00000514142 LCE6AA0A183 80 aa6.06□□□□□ -1.44
PDLIM3-209ENST00000514142 KMT2BQ9UMN6 2715 aaPredicted RBP6.06□□□□□ -1.44
PDLIM3-209ENST00000514142 M0QZ58 72 aa6.05□□□□□ -1.44
PDLIM3-209ENST00000514142 HIVEP1P15822 2718 aa6.05□□□□□ -1.44
PDLIM3-209ENST00000514142 M0R2T5 61 aa6.05□□□□□ -1.44
PDLIM3-209ENST00000514142 TENM4Q6N022 2769 aa6.02□□□□□ -1.45
PDLIM3-209ENST00000514142 NDUFAF8A1L188 74 aa5.99□□□□□ -1.45
PDLIM3-209ENST00000514142 KRTAP10-1P60331 282 aa5.99□□□□□ -1.45
PDLIM3-209ENST00000514142 KRTAP11-1Q8IUC1 163 aa5.99□□□□□ -1.45
PDLIM3-209ENST00000514142 KRTAP10-2P60368 255 aa5.98□□□□□ -1.45
PDLIM3-209ENST00000514142 CELSR2Q9HCU4 2923 aa5.98□□□□□ -1.45
PDLIM3-209ENST00000514142 MUC3AQ02505 3323 aa5.97□□□□□ -1.45
PDLIM3-209ENST00000514142 WDFY3Q8IZQ1 3526 aa5.96□□□□□ -1.46
PDLIM3-209ENST00000514142 CRYBG3Q68DQ2 2970 aa5.96□□□□□ -1.46
PDLIM3-209ENST00000514142 APCP25054 2843 aa5.96□□□□□ -1.46
PDLIM3-209ENST00000514142 KRTAP7-1Q8IUC3 87 aa5.94□□□□□ -1.46
PDLIM3-209ENST00000514142 NF1P21359 2839 aa5.93□□□□□ -1.46
PDLIM3-209ENST00000514142 DCHS1Q96JQ0 3298 aa5.92□□□□□ -1.46
PDLIM3-209ENST00000514142 HRNRQ86YZ3 2850 aaPredicted RBP5.91□□□□□ -1.46
PDLIM3-209ENST00000514142 RELNP78509 3460 aa5.9□□□□□ -1.46
PDLIM3-209ENST00000514142 ASPMQ8IZT6 3477 aa5.89□□□□□ -1.47
PDLIM3-209ENST00000514142 SEC61BP60468 96 aaKnown RBP5.89□□□□□ -1.47
PDLIM3-209ENST00000514142 FBN2P35556 2912 aa5.89□□□□□ -1.47
PDLIM3-209ENST00000514142 DCHS2Q6V1P9 2916 aa5.89□□□□□ -1.47
PDLIM3-209ENST00000514142 Q5VSD8 79 aa5.88□□□□□ -1.47
PDLIM3-209ENST00000514142 NIPBLQ6KC79 2804 aaeCLIP5.87□□□□□ -1.47
PDLIM3-209ENST00000514142 PLAC4Q8WY50 150 aa5.86□□□□□ -1.47
PDLIM3-209ENST00000514142 LAMA5O15230 3695 aa5.85□□□□□ -1.47
PDLIM3-209ENST00000514142 A8MUU9 505 aa5.85□□□□□ -1.47
PDLIM3-209ENST00000514142 TENM3Q9P273 2699 aa5.84□□□□□ -1.47
PDLIM3-209ENST00000514142 C20orf166-AS1Q96NR2 134 aa5.8□□□□□ -1.48
PDLIM3-209ENST00000514142 KRTAP13-1Q8IUC0 172 aa5.8□□□□□ -1.48
PDLIM3-209ENST00000514142 KRTAP13-2Q52LG2 175 aa5.79□□□□□ -1.48
PDLIM3-209ENST00000514142 DMDP11532 3685 aa5.79□□□□□ -1.48
PDLIM3-209ENST00000514142 ZFHX4Q86UP3 3567 aa5.77□□□□□ -1.49
PDLIM3-209ENST00000514142 Q6ZRN7 208 aaPredicted RBP5.76□□□□□ -1.49
PDLIM3-209ENST00000514142 MXRA5Q9NR99 2828 aa5.75□□□□□ -1.49
PDLIM3-209ENST00000514142 RPS29P62273 56 aaKnown RBP5.72□□□□□ -1.49
PDLIM3-209ENST00000514142 C10orf95Q9H7T3 257 aa5.72□□□□□ -1.49
PDLIM3-209ENST00000514142 SPENQ96T58 3664 aaKnown RBP5.69□□□□□ -1.5
PDLIM3-209ENST00000514142 TENM1Q9UKZ4 2725 aa5.64□□□□□ -1.51
PDLIM3-209ENST00000514142 H0YAA0 97 aa5.64□□□□□ -1.51
PDLIM3-209ENST00000514142 CELSR1Q9NYQ6 3014 aa5.62□□□□□ -1.51
PDLIM3-209ENST00000514142 TNP1P09430 55 aa5.61□□□□□ -1.51
PDLIM3-209ENST00000514142 TENM2Q9NT68 2774 aa5.57□□□□□ -1.52
PDLIM3-209ENST00000514142 PKD1L1Q8TDX9 2849 aa5.57□□□□□ -1.52
PDLIM3-209ENST00000514142 SMG1Q96Q15 3661 aaKnown RBP5.56□□□□□ -1.52
PDLIM3-209ENST00000514142 P0C880 135 aa5.55□□□□□ -1.52
PDLIM3-209ENST00000514142 CSMD1Q96PZ7 3565 aa5.55□□□□□ -1.52
PDLIM3-209ENST00000514142 KRTAP10-8P60410 259 aa5.5□□□□□ -1.53
PDLIM3-209ENST00000514142 PP632Q6XCG6 107 aa5.5□□□□□ -1.53
PDLIM3-209ENST00000514142 FBN1P35555 2871 aaKnown RBP5.49□□□□□ -1.53
PDLIM3-209ENST00000514142 CUBNO60494 3623 aa5.48□□□□□ -1.53
PDLIM3-209ENST00000514142 KRTAP21-3Q3LHN1 58 aa5.48□□□□□ -1.53
PDLIM3-209ENST00000514142 SVEP1Q4LDE5 3571 aa5.47□□□□□ -1.53
PDLIM3-209ENST00000514142 KRTAP1-4P0C5Y4 121 aa5.46□□□□□ -1.54
PDLIM3-209ENST00000514142 OTOGQ6ZRI0 2925 aa5.45□□□□□ -1.54
PDLIM3-209ENST00000514142 VWFP04275 2813 aa5.45□□□□□ -1.54
PDLIM3-209ENST00000514142 SRRM2Q9UQ35 2752 aaKnown RBP5.43□□□□□ -1.54
PDLIM3-209ENST00000514142 PDZD2O15018 2839 aa5.42□□□□□ -1.54
PDLIM3-209ENST00000514142 TGP01266 2768 aa5.41□□□□□ -1.54
PDLIM3-209ENST00000514142 XP32Q5T750 250 aa5.4□□□□□ -1.54
PDLIM3-209ENST00000514142 NBPF19A0A087WUL8 3843 aa5.39□□□□□ -1.55
PDLIM3-209ENST00000514142 ZFHX3Q15911 3703 aa5.39□□□□□ -1.55
PDLIM3-209ENST00000514142 CSMD2Q7Z408 3487 aa5.39□□□□□ -1.55
PDLIM3-209ENST00000514142 AKAP9Q99996 3911 aa5.37□□□□□ -1.55
PDLIM3-209ENST00000514142 A0A1B0GVY2 172 aa5.34□□□□□ -1.55
PDLIM3-209ENST00000514142 KRTAP13-3Q3SY46 172 aa5.33□□□□□ -1.56
PDLIM3-209ENST00000514142 KRTAP12-2P59991 146 aa5.25□□□□□ -1.57
PDLIM3-209ENST00000514142 TPRXLQ17RH7 258 aa5.23□□□□□ -1.57
PDLIM3-209ENST00000514142 BSNQ9UPA5 3926 aa5.18□□□□□ -1.58
PDLIM3-209ENST00000514142 KRTAP10-10P60014 251 aa5.14□□□□□ -1.59
PDLIM3-209ENST00000514142 KRTAP12-1P59990 96 aa5.13□□□□□ -1.59
PDLIM3-209ENST00000514142 TRRAPQ9Y4A5 3859 aa5.11□□□□□ -1.59
PDLIM3-209ENST00000514142 KRTAP3-1Q9BYR8 98 aa5.09□□□□□ -1.59
PDLIM3-209ENST00000514142 KRTAP13-4Q3LI77 160 aa5.09□□□□□ -1.6
PDLIM3-209ENST00000514142 VPS13CQ709C8 3753 aa5.07□□□□□ -1.6
PDLIM3-209ENST00000514142 PRO2289Q9P1D8 64 aa5.04□□□□□ -1.6
PDLIM3-209ENST00000514142 FBN3Q75N90 2809 aa5.04□□□□□ -1.6
PDLIM3-209ENST00000514142 ANK3Q12955 4377 aaKnown RBP5.01□□□□□ -1.61
PDLIM3-209ENST00000514142 KRTAP10-6P60371 365 aaPredicted RBP4.98□□□□□ -1.61
PDLIM3-209ENST00000514142 COL7A1Q02388 2944 aa4.97□□□□□ -1.61
PDLIM3-209ENST00000514142 KRTAP15-1Q3LI76 137 aa4.93□□□□□ -1.62
PDLIM3-209ENST00000514142 MEGF8Q7Z7M0 2845 aa4.92□□□□□ -1.62
PDLIM3-209ENST00000514142 ZNF469Q96JG9 3925 aaPredicted RBP4.86□□□□□ -1.63
PDLIM3-209ENST00000514142 DNAH1Q9P2D7 4330 aa4.79□□□□□ -1.64
PDLIM3-209ENST00000514142 KRTAP3-2Q9BYR7 98 aa4.78□□□□□ -1.64
PDLIM3-209ENST00000514142 INE1O15225 51 aa4.76□□□□□ -1.65
PDLIM3-209ENST00000514142 KRTAP3-3Q9BYR6 98 aa4.74□□□□□ -1.65
PDLIM3-209ENST00000514142 ANK2Q01484 3957 aa4.71□□□□□ -1.65
PDLIM3-209ENST00000514142 CSMD3Q7Z407 3707 aa4.7□□□□□ -1.66
PDLIM3-209ENST00000514142 LYSTQ99698 3801 aa4.7□□□□□ -1.66
PDLIM3-209ENST00000514142 HUWE1Q7Z6Z7 4374 aaKnown RBP4.64□□□□□ -1.67
PDLIM3-209ENST00000514142 KRTAP10-12P60413 245 aa4.56□□□□□ -1.68
PDLIM3-209ENST00000514142 MT1HL1P0DM35 61 aa4.55□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms