RNA–Protein interactions for RNA: ENST00000512701.6

TTC39B-208, Transcript of tetratricopeptide repeat domain 39B, human

APPRIS P3 TSL 2 BASIC

Gene TTC39B, Length 10,483 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TTC39B-208	ENST00000512701	APC	P25054	2843 aa		4.3	□□□□□ -1.72
TTC39B-208	ENST00000512701	ZNF292	O60281	2723 aa		4.3	□□□□□ -1.72
TTC39B-208	ENST00000512701	LCE6A	A0A183	80 aa		4.29	□□□□□ -1.72
TTC39B-208	ENST00000512701	ASB16-AS1	Q495Z4	193 aa		4.28	□□□□□ -1.72
TTC39B-208	ENST00000512701	UTP20	O75691	2785 aa	Known RBP	4.28	□□□□□ -1.72
TTC39B-208	ENST00000512701	SEC61B	P60468	96 aa	Known RBP	4.28	□□□□□ -1.72
TTC39B-208	ENST00000512701	DMXL2	Q8TDJ6	3036 aa		4.27	□□□□□ -1.73
TTC39B-208	ENST00000512701	COL12A1	Q99715	3063 aa		4.25	□□□□□ -1.73
TTC39B-208	ENST00000512701	KMT2B	Q9UMN6	2715 aa	Predicted RBP	4.25	□□□□□ -1.73
TTC39B-208	ENST00000512701	TACC2	O95359	2948 aa		4.25	□□□□□ -1.73
TTC39B-208	ENST00000512701	IGSF10	Q6WRI0	2623 aa		4.22	□□□□□ -1.73
TTC39B-208	ENST00000512701	ASPM	Q8IZT6	3477 aa		4.21	□□□□□ -1.74
TTC39B-208	ENST00000512701	WDFY3	Q8IZQ1	3526 aa		4.21	□□□□□ -1.74
TTC39B-208	ENST00000512701		Q6ZRN7	208 aa	Predicted RBP	4.2	□□□□□ -1.74
TTC39B-208	ENST00000512701		A0A1B0GVY2	172 aa		4.19	□□□□□ -1.74
TTC39B-208	ENST00000512701	BOD1L1	Q8NFC6	3051 aa		4.19	□□□□□ -1.74
TTC39B-208	ENST00000512701		H0YAA0	97 aa		4.19	□□□□□ -1.74
TTC39B-208	ENST00000512701	KRTAP13-1	Q8IUC0	172 aa		4.18	□□□□□ -1.74
TTC39B-208	ENST00000512701	LAMA1	P25391	3075 aa		4.18	□□□□□ -1.74
TTC39B-208	ENST00000512701	ITPR2	Q14571	2701 aa		4.18	□□□□□ -1.74
TTC39B-208	ENST00000512701	FRYL	O94915	3013 aa		4.16	□□□□□ -1.74
TTC39B-208	ENST00000512701	KRTAP10-8	P60410	259 aa		4.15	□□□□□ -1.74
TTC39B-208	ENST00000512701	ATM	Q13315	3056 aa		4.14	□□□□□ -1.75
TTC39B-208	ENST00000512701	CELSR2	Q9HCU4	2923 aa		4.12	□□□□□ -1.75
TTC39B-208	ENST00000512701	FLNC	Q14315	2725 aa		4.12	□□□□□ -1.75
TTC39B-208	ENST00000512701	DCHS1	Q96JQ0	3298 aa		4.1	□□□□□ -1.75
TTC39B-208	ENST00000512701	TNP1	P09430	55 aa		4.09	□□□□□ -1.75
TTC39B-208	ENST00000512701	ZZEF1	O43149	2961 aa		4.09	□□□□□ -1.75
TTC39B-208	ENST00000512701	LOC400499	M0QZD8	3231 aa		4.07	□□□□□ -1.76
TTC39B-208	ENST00000512701		P0C880	135 aa		4.06	□□□□□ -1.76
TTC39B-208	ENST00000512701	ADGRG4	Q8IZF6	3080 aa		4.05	□□□□□ -1.76
TTC39B-208	ENST00000512701	TNRC18	O15417	2968 aa	Predicted RBP	4.02	□□□□□ -1.77
TTC39B-208	ENST00000512701	DCHS2	Q6V1P9	2916 aa		4.02	□□□□□ -1.77
TTC39B-208	ENST00000512701	ZAN	Q9Y493	2812 aa		4.02	□□□□□ -1.77
TTC39B-208	ENST00000512701	RPS29	P62273	56 aa	Known RBP	4.01	□□□□□ -1.77
TTC39B-208	ENST00000512701	XP32	Q5T750	250 aa		4	□□□□□ -1.77
TTC39B-208	ENST00000512701	RELN	P78509	3460 aa		3.99	□□□□□ -1.77
TTC39B-208	ENST00000512701	FBN2	P35556	2912 aa		3.99	□□□□□ -1.77
TTC39B-208	ENST00000512701	KRTAP1-4	P0C5Y4	121 aa		3.99	□□□□□ -1.77
TTC39B-208	ENST00000512701	TG	P01266	2768 aa		3.98	□□□□□ -1.77
TTC39B-208	ENST00000512701	HRNR	Q86YZ3	2850 aa	Predicted RBP	3.98	□□□□□ -1.77
TTC39B-208	ENST00000512701	DMD	P11532	3685 aa		3.98	□□□□□ -1.77
TTC39B-208	ENST00000512701	DMXL1	Q9Y485	3027 aa		3.96	□□□□□ -1.78
TTC39B-208	ENST00000512701	KRTAP12-2	P59991	146 aa		3.96	□□□□□ -1.78
TTC39B-208	ENST00000512701	NF1	P21359	2839 aa		3.96	□□□□□ -1.78
TTC39B-208	ENST00000512701	ZFHX4	Q86UP3	3567 aa		3.95	□□□□□ -1.78
TTC39B-208	ENST00000512701	LAMA5	O15230	3695 aa		3.94	□□□□□ -1.78
TTC39B-208	ENST00000512701	TPRXL	Q17RH7	258 aa		3.92	□□□□□ -1.78
TTC39B-208	ENST00000512701	TENM4	Q6N022	2769 aa		3.92	□□□□□ -1.78
TTC39B-208	ENST00000512701	NIPBL	Q6KC79	2804 aa	eCLIP	3.92	□□□□□ -1.78
TTC39B-208	ENST00000512701	CSMD1	Q96PZ7	3565 aa		3.9	□□□□□ -1.78
TTC39B-208	ENST00000512701	TENM1	Q9UKZ4	2725 aa		3.89	□□□□□ -1.79
TTC39B-208	ENST00000512701	PP632	Q6XCG6	107 aa		3.89	□□□□□ -1.79
TTC39B-208	ENST00000512701	KRTAP10-10	P60014	251 aa		3.88	□□□□□ -1.79
TTC39B-208	ENST00000512701	TENM3	Q9P273	2699 aa		3.86	□□□□□ -1.79
TTC39B-208	ENST00000512701	CSMD2	Q7Z408	3487 aa		3.85	□□□□□ -1.79
TTC39B-208	ENST00000512701	VWF	P04275	2813 aa		3.85	□□□□□ -1.79
TTC39B-208	ENST00000512701	TENM2	Q9NT68	2774 aa		3.84	□□□□□ -1.79
TTC39B-208	ENST00000512701	CELSR1	Q9NYQ6	3014 aa		3.84	□□□□□ -1.8
TTC39B-208	ENST00000512701	CUBN	O60494	3623 aa		3.84	□□□□□ -1.8
TTC39B-208	ENST00000512701	MXRA5	Q9NR99	2828 aa		3.83	□□□□□ -1.8
TTC39B-208	ENST00000512701	KRTAP13-3	Q3SY46	172 aa		3.82	□□□□□ -1.8
TTC39B-208	ENST00000512701	NBPF19	A0A087WUL8	3843 aa		3.81	□□□□□ -1.8
TTC39B-208	ENST00000512701	PDZD2	O15018	2839 aa		3.81	□□□□□ -1.8
TTC39B-208	ENST00000512701	PKD1L1	Q8TDX9	2849 aa		3.79	□□□□□ -1.8
TTC39B-208	ENST00000512701	KRTAP13-4	Q3LI77	160 aa		3.78	□□□□□ -1.8
TTC39B-208	ENST00000512701	KRTAP4-5	Q9BYR2	181 aa		3.78	□□□□□ -1.8
TTC39B-208	ENST00000512701	SMG1	Q96Q15	3661 aa	Known RBP	3.78	□□□□□ -1.8
TTC39B-208	ENST00000512701	KRTAP12-1	P59990	96 aa		3.77	□□□□□ -1.81
TTC39B-208	ENST00000512701	KRTAP3-1	Q9BYR8	98 aa		3.75	□□□□□ -1.81
TTC39B-208	ENST00000512701	SVEP1	Q4LDE5	3571 aa		3.74	□□□□□ -1.81
TTC39B-208	ENST00000512701	SPEN	Q96T58	3664 aa	Known RBP	3.71	□□□□□ -1.81
TTC39B-208	ENST00000512701	KRTAP15-1	Q3LI76	137 aa		3.66	□□□□□ -1.82
TTC39B-208	ENST00000512701	ZFHX3	Q15911	3703 aa		3.66	□□□□□ -1.82
TTC39B-208	ENST00000512701	PRO2289	Q9P1D8	64 aa		3.64	□□□□□ -1.83
TTC39B-208	ENST00000512701	SRRM2	Q9UQ35	2752 aa	Known RBP	3.64	□□□□□ -1.83
TTC39B-208	ENST00000512701	MUC3A	Q02505	3323 aa		3.64	□□□□□ -1.83
TTC39B-208	ENST00000512701	CRCT1	Q9UGL9	99 aa		3.64	□□□□□ -1.83
TTC39B-208	ENST00000512701	KRTAP10-6	P60371	365 aa	Predicted RBP	3.62	□□□□□ -1.83
TTC39B-208	ENST00000512701	FBN1	P35555	2871 aa	Known RBP	3.61	□□□□□ -1.83
TTC39B-208	ENST00000512701	FBN3	Q75N90	2809 aa		3.58	□□□□□ -1.84
TTC39B-208	ENST00000512701	MEGF8	Q7Z7M0	2845 aa		3.54	□□□□□ -1.84
TTC39B-208	ENST00000512701	KRTAP3-2	Q9BYR7	98 aa		3.5	□□□□□ -1.85
TTC39B-208	ENST00000512701	VPS13C	Q709C8	3753 aa		3.49	□□□□□ -1.85
TTC39B-208	ENST00000512701	KRTAP3-3	Q9BYR6	98 aa		3.47	□□□□□ -1.85
TTC39B-208	ENST00000512701	OTOG	Q6ZRI0	2925 aa		3.47	□□□□□ -1.85
TTC39B-208	ENST00000512701	TRRAP	Q9Y4A5	3859 aa		3.46	□□□□□ -1.85
TTC39B-208	ENST00000512701	COL7A1	Q02388	2944 aa		3.46	□□□□□ -1.86
TTC39B-208	ENST00000512701	CSMD3	Q7Z407	3707 aa		3.44	□□□□□ -1.86
TTC39B-208	ENST00000512701	LOR	P23490	312 aa	Predicted RBP	3.42	□□□□□ -1.86
TTC39B-208	ENST00000512701	LCE3A	Q5TA76	89 aa		3.39	□□□□□ -1.87
TTC39B-208	ENST00000512701	KRTAP10-12	P60413	245 aa		3.39	□□□□□ -1.87
TTC39B-208	ENST00000512701	ANK3	Q12955	4377 aa	Known RBP	3.38	□□□□□ -1.87
TTC39B-208	ENST00000512701	INE1	O15225	51 aa		3.36	□□□□□ -1.87
TTC39B-208	ENST00000512701	KRTAP21-3	Q3LHN1	58 aa		3.35	□□□□□ -1.87
TTC39B-208	ENST00000512701	KRTAP12-3	P60328	96 aa		3.32	□□□□□ -1.88
TTC39B-208	ENST00000512701	MT1HL1	P0DM35	61 aa		3.31	□□□□□ -1.88
TTC39B-208	ENST00000512701	KRTAP10-5	P60370	271 aa		3.29	□□□□□ -1.88
TTC39B-208	ENST00000512701	KRTAP17-1	Q9BYP8	105 aa		3.29	□□□□□ -1.88
TTC39B-208	ENST00000512701	DNHD1	Q96M86	4753 aa		3.26	□□□□□ -1.89

Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms