RNA–Protein interactions for RNA: ENST00000512590.6

VCAN-208, Transcript of versican, humanhuman

TSL 1 (best) BASIC

Gene VCAN, Length 5,923 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-208ENST00000512590 RELNP78509 3460 aa4.79□□□□□ -1.64
VCAN-208ENST00000512590 KALRNO60229 2985 aa4.79□□□□□ -1.64
VCAN-208ENST00000512590 KRTAP29-1A8MX34 341 aaPredicted RBP4.77□□□□□ -1.65
VCAN-208ENST00000512590 Q5XG85 94 aa4.77□□□□□ -1.65
VCAN-208ENST00000512590 TNRC18O15417 2968 aaPredicted RBP4.77□□□□□ -1.65
VCAN-208ENST00000512590 CENPEQ02224 2701 aa4.76□□□□□ -1.65
VCAN-208ENST00000512590 ZZEF1O43149 2961 aa4.76□□□□□ -1.65
VCAN-208ENST00000512590 ITPR3Q14573 2671 aa4.75□□□□□ -1.65
VCAN-208ENST00000512590 TACC2O95359 2948 aa4.74□□□□□ -1.65
VCAN-208ENST00000512590 SMG1Q96Q15 3661 aaKnown RBP4.74□□□□□ -1.65
VCAN-208ENST00000512590 AKAP13Q12802 2813 aa4.74□□□□□ -1.65
VCAN-208ENST00000512590 HELZ2Q9BYK8 2649 aaKnown RBP4.74□□□□□ -1.65
VCAN-208ENST00000512590 ZNF292O60281 2723 aa4.73□□□□□ -1.65
VCAN-208ENST00000512590 CSMD1Q96PZ7 3565 aa4.72□□□□□ -1.65
VCAN-208ENST00000512590 LRBAP50851 2863 aa4.71□□□□□ -1.66
VCAN-208ENST00000512590 CUBNO60494 3623 aa4.71□□□□□ -1.66
VCAN-208ENST00000512590 CFAP46Q8IYW2 2715 aa4.7□□□□□ -1.66
VCAN-208ENST00000512590 A6NN06 94 aa4.7□□□□□ -1.66
VCAN-208ENST00000512590 SVEP1Q4LDE5 3571 aa4.7□□□□□ -1.66
VCAN-208ENST00000512590 KRTAP11-1Q8IUC1 163 aa4.7□□□□□ -1.66
VCAN-208ENST00000512590 STAB2Q8WWQ8 2551 aa4.68□□□□□ -1.66
VCAN-208ENST00000512590 ASH1LQ9NR48 2969 aaKnown RBP4.64□□□□□ -1.67
VCAN-208ENST00000512590 CRCT1Q9UGL9 99 aa4.64□□□□□ -1.67
VCAN-208ENST00000512590 SETXQ7Z333 2677 aaKnown RBP4.63□□□□□ -1.67
VCAN-208ENST00000512590 SPENQ96T58 3664 aaKnown RBP4.62□□□□□ -1.67
VCAN-208ENST00000512590 BAHCC1Q9P281 2608 aa4.57□□□□□ -1.68
VCAN-208ENST00000512590 UNC79Q9P2D8 2635 aa4.56□□□□□ -1.68
VCAN-208ENST00000512590 KRTAP13-1Q8IUC0 172 aa4.56□□□□□ -1.68
VCAN-208ENST00000512590 KRTAP13-3Q3SY46 172 aa4.56□□□□□ -1.68
VCAN-208ENST00000512590 H0YAA0 97 aa4.56□□□□□ -1.68
VCAN-208ENST00000512590 KRTAP12-2P59991 146 aa4.55□□□□□ -1.68
VCAN-208ENST00000512590 KRTAP15-1Q3LI76 137 aa4.55□□□□□ -1.68
VCAN-208ENST00000512590 CRYBG3Q68DQ2 2970 aa4.54□□□□□ -1.68
VCAN-208ENST00000512590 NBEAL1Q6ZS30 2694 aa4.53□□□□□ -1.69
VCAN-208ENST00000512590 IGSF10Q6WRI0 2623 aa4.52□□□□□ -1.69
VCAN-208ENST00000512590 CYSTM1Q9H1C7 97 aa4.52□□□□□ -1.69
VCAN-208ENST00000512590 CELSR1Q9NYQ6 3014 aa4.52□□□□□ -1.69
VCAN-208ENST00000512590 CHD6Q8TD26 2715 aa4.51□□□□□ -1.69
VCAN-208ENST00000512590 UTP20O75691 2785 aaKnown RBP4.51□□□□□ -1.69
VCAN-208ENST00000512590 CSMD2Q7Z408 3487 aa4.51□□□□□ -1.69
VCAN-208ENST00000512590 COL6A5A8TX70 2615 aa4.49□□□□□ -1.69
VCAN-208ENST00000512590 GCN1Q92616 2671 aaKnown RBP4.48□□□□□ -1.69
VCAN-208ENST00000512590 TEP1Q99973 2627 aaKnown RBP4.48□□□□□ -1.69
VCAN-208ENST00000512590 TEX15Q9BXT5 2789 aa4.48□□□□□ -1.69
VCAN-208ENST00000512590 KRTAP1-4P0C5Y4 121 aa4.48□□□□□ -1.69
VCAN-208ENST00000512590 DCHS2Q6V1P9 2916 aa4.46□□□□□ -1.69
VCAN-208ENST00000512590 KRTAP7-1Q8IUC3 87 aa4.46□□□□□ -1.7
VCAN-208ENST00000512590 NOTCH1P46531 2555 aa4.45□□□□□ -1.7
VCAN-208ENST00000512590 ITPR1Q14643 2758 aa4.45□□□□□ -1.7
VCAN-208ENST00000512590 FLNCQ14315 2725 aa4.44□□□□□ -1.7
VCAN-208ENST00000512590 KRTAP10-6P60371 365 aaPredicted RBP4.43□□□□□ -1.7
VCAN-208ENST00000512590 ZANQ9Y493 2812 aa4.41□□□□□ -1.7
VCAN-208ENST00000512590 UBR5O95071 2799 aaPredicted RBP4.4□□□□□ -1.71
VCAN-208ENST00000512590 NSD1Q96L73 2696 aaPredicted RBP4.37□□□□□ -1.71
VCAN-208ENST00000512590 ZFHX3Q15911 3703 aa4.37□□□□□ -1.71
VCAN-208ENST00000512590 NBEAL2Q6ZNJ1 2754 aa4.36□□□□□ -1.71
VCAN-208ENST00000512590 FBN2P35556 2912 aa4.36□□□□□ -1.71
VCAN-208ENST00000512590 CELSR2Q9HCU4 2923 aa4.35□□□□□ -1.71
VCAN-208ENST00000512590 HRNRQ86YZ3 2850 aaPredicted RBP4.34□□□□□ -1.71
VCAN-208ENST00000512590 VPS13CQ709C8 3753 aa4.34□□□□□ -1.71
VCAN-208ENST00000512590 KRTAP13-4Q3LI77 160 aa4.33□□□□□ -1.72
VCAN-208ENST00000512590 NF1P21359 2839 aa4.32□□□□□ -1.72
VCAN-208ENST00000512590 ITPR2Q14571 2701 aa4.32□□□□□ -1.72
VCAN-208ENST00000512590 BSNQ9UPA5 3926 aa4.32□□□□□ -1.72
VCAN-208ENST00000512590 LORP23490 312 aaPredicted RBP4.31□□□□□ -1.72
VCAN-208ENST00000512590 KMT2BQ9UMN6 2715 aaPredicted RBP4.3□□□□□ -1.72
VCAN-208ENST00000512590 NBPF19A0A087WUL8 3843 aa4.27□□□□□ -1.73
VCAN-208ENST00000512590 LCE2DQ5TA82 110 aaPredicted RBP4.25□□□□□ -1.73
VCAN-208ENST00000512590 NIPBLQ6KC79 2804 aaeCLIP4.24□□□□□ -1.73
VCAN-208ENST00000512590 HIVEP1P15822 2718 aa4.23□□□□□ -1.73
VCAN-208ENST00000512590 KRTAP10-12P60413 245 aa4.21□□□□□ -1.74
VCAN-208ENST00000512590 APCP25054 2843 aa4.2□□□□□ -1.74
VCAN-208ENST00000512590 MXRA5Q9NR99 2828 aa4.19□□□□□ -1.74
VCAN-208ENST00000512590 KRTAP8-1Q8IUC2 63 aa4.18□□□□□ -1.74
VCAN-208ENST00000512590 KRTAP10-5P60370 271 aa4.1□□□□□ -1.75
VCAN-208ENST00000512590 TENM4Q6N022 2769 aa4.1□□□□□ -1.75
VCAN-208ENST00000512590 PDZD2O15018 2839 aa4.06□□□□□ -1.76
VCAN-208ENST00000512590 KRTAP12-1P59990 96 aa4.05□□□□□ -1.76
VCAN-208ENST00000512590 ZNF469Q96JG9 3925 aaPredicted RBP4.05□□□□□ -1.76
VCAN-208ENST00000512590 KRTAP10-7P60409 375 aaPredicted RBP4.05□□□□□ -1.76
VCAN-208ENST00000512590 FBN1P35555 2871 aaKnown RBP4.03□□□□□ -1.76
VCAN-208ENST00000512590 INE1O15225 51 aa4.01□□□□□ -1.77
VCAN-208ENST00000512590 VWFP04275 2813 aa4□□□□□ -1.77
VCAN-208ENST00000512590 TENM1Q9UKZ4 2725 aa3.99□□□□□ -1.77
VCAN-208ENST00000512590 KRTAP12-3P60328 96 aa3.98□□□□□ -1.77
VCAN-208ENST00000512590 OTOGQ6ZRI0 2925 aa3.98□□□□□ -1.77
VCAN-208ENST00000512590 TRRAPQ9Y4A5 3859 aa3.97□□□□□ -1.77
VCAN-208ENST00000512590 PKD1L1Q8TDX9 2849 aa3.94□□□□□ -1.78
VCAN-208ENST00000512590 AKAP9Q99996 3911 aa3.94□□□□□ -1.78
VCAN-208ENST00000512590 KRTAP3-3Q9BYR6 98 aa3.92□□□□□ -1.78
VCAN-208ENST00000512590 KRTAP3-2Q9BYR7 98 aa3.92□□□□□ -1.78
VCAN-208ENST00000512590 CSMD3Q7Z407 3707 aa3.9□□□□□ -1.79
VCAN-208ENST00000512590 SPRR2FQ96RM1 72 aa3.89□□□□□ -1.79
VCAN-208ENST00000512590 TENM3Q9P273 2699 aa3.89□□□□□ -1.79
VCAN-208ENST00000512590 KRTAP4-5Q9BYR2 181 aa3.84□□□□□ -1.79
VCAN-208ENST00000512590 TENM2Q9NT68 2774 aa3.84□□□□□ -1.8
VCAN-208ENST00000512590 LCE3AQ5TA76 89 aa3.82□□□□□ -1.8
VCAN-208ENST00000512590 MT1HL1P0DM35 61 aa3.81□□□□□ -1.8
VCAN-208ENST00000512590 SPRR2EP22531 72 aa3.8□□□□□ -1.8
VCAN-208ENST00000512590 SPRR2BP35325 72 aa3.8□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 147 ms