RNA–Protein interactions for RNA: ENST00000495485.1

HDAC3-214, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 797 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-214ENST00000495485 PRR15Q8IV56 129 aa6.03□□□□□ -1.44
HDAC3-214ENST00000495485 Q8N9L7 120 aa6.03□□□□□ -1.44
HDAC3-214ENST00000495485 DEFB116Q30KQ4 102 aa6.02□□□□□ -1.45
HDAC3-214ENST00000495485 Q5XG85 94 aa6.02□□□□□ -1.45
HDAC3-214ENST00000495485 A0A087X002 238 aa6.01□□□□□ -1.45
HDAC3-214ENST00000495485 SPINK1P00995 79 aa6.01□□□□□ -1.45
HDAC3-214ENST00000495485 KRTAP1-4P0C5Y4 121 aa6.01□□□□□ -1.45
HDAC3-214ENST00000495485 KRTAP13-2Q52LG2 175 aa6□□□□□ -1.45
HDAC3-214ENST00000495485 J3QL48 77 aa5.99□□□□□ -1.45
HDAC3-214ENST00000495485 RPS29P62273 56 aaKnown RBP5.99□□□□□ -1.45
HDAC3-214ENST00000495485 CASC2Q6XLA1 102 aa5.99□□□□□ -1.45
HDAC3-214ENST00000495485 Q96NJ1 140 aa5.98□□□□□ -1.45
HDAC3-214ENST00000495485 HERC1Q15751 4861 aa5.97□□□□□ -1.45
HDAC3-214ENST00000495485 A0A1B0GVX0 72 aa5.97□□□□□ -1.45
HDAC3-214ENST00000495485 CCDC179H3BU77 68 aa5.97□□□□□ -1.45
HDAC3-214ENST00000495485 LINC00304Q8N9R0 145 aa5.96□□□□□ -1.46
HDAC3-214ENST00000495485 hDV103S1A0JD37 113 aa5.95□□□□□ -1.46
HDAC3-214ENST00000495485 C8orf87E5RJ46 101 aa5.95□□□□□ -1.46
HDAC3-214ENST00000495485 WFDC13Q8IUB5 93 aa5.95□□□□□ -1.46
HDAC3-214ENST00000495485 C5orf47Q569G3 176 aa5.94□□□□□ -1.46
HDAC3-214ENST00000495485 IGHV6-1A0A0B4J1U7 121 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 KRTAP10-8P60410 259 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 PRR26Q8N8Z3 221 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 OCR1Q9BZK8 76 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 TP53AIP1Q9HCN2 124 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 C8orf17Q9NRJ1 99 aa5.93□□□□□ -1.46
HDAC3-214ENST00000495485 NDUFC1O43677 76 aa5.92□□□□□ -1.46
HDAC3-214ENST00000495485 MMP24-AS1A0A0U1RRL7 71 aa5.91□□□□□ -1.46
HDAC3-214ENST00000495485 MP68P56378 58 aa5.91□□□□□ -1.46
HDAC3-214ENST00000495485 C20orf197Q8N268 126 aa5.91□□□□□ -1.46
HDAC3-214ENST00000495485 TMEM254Q8TBM7 123 aa5.91□□□□□ -1.46
HDAC3-214ENST00000495485 H3BPC8 53 aa5.9□□□□□ -1.46
HDAC3-214ENST00000495485 MT1HL1P0DM35 61 aa5.9□□□□□ -1.46
HDAC3-214ENST00000495485 KLKP1Q107X0 134 aa5.9□□□□□ -1.46
HDAC3-214ENST00000495485 C1orf195Q5TG92 126 aa5.9□□□□□ -1.46
HDAC3-214ENST00000495485 LINC00313P59037 77 aa5.89□□□□□ -1.47
HDAC3-214ENST00000495485 MRPL34Q9BQ48 92 aaKnown RBP5.89□□□□□ -1.47
HDAC3-214ENST00000495485 NDUFS5O43920 106 aa5.87□□□□□ -1.47
HDAC3-214ENST00000495485 TMEM258P61165 79 aa5.86□□□□□ -1.47
HDAC3-214ENST00000495485 TRAV22A0A0B4J277 110 aa5.83□□□□□ -1.48
HDAC3-214ENST00000495485 A0A0U1RQV1 116 aa5.83□□□□□ -1.48
HDAC3-214ENST00000495485 H0Y9P7 68 aa5.82□□□□□ -1.48
HDAC3-214ENST00000495485 ATP5EP56381 51 aaPredicted RBP5.82□□□□□ -1.48
HDAC3-214ENST00000495485 SNURFQ9Y675 71 aa5.82□□□□□ -1.48
HDAC3-214ENST00000495485 HMCN2Q8NDA2 5059 aa5.79□□□□□ -1.48
HDAC3-214ENST00000495485 LINC00208Q96KT6 92 aa5.79□□□□□ -1.48
HDAC3-214ENST00000495485 H7BZZ5 65 aa5.77□□□□□ -1.49
HDAC3-214ENST00000495485 NOTCH2NLQ7Z3S9 236 aa5.77□□□□□ -1.49
HDAC3-214ENST00000495485 Q8N9P0 234 aaPredicted RBP5.77□□□□□ -1.49
HDAC3-214ENST00000495485 C1orf64Q8NEQ6 169 aa5.77□□□□□ -1.49
HDAC3-214ENST00000495485 FAM236DA0A1B0GTK5 79 aa5.76□□□□□ -1.49
HDAC3-214ENST00000495485 FAM236CP0DP71 79 aa5.76□□□□□ -1.49
HDAC3-214ENST00000495485 LOC101927531A0A1B0GV80 90 aa5.75□□□□□ -1.49
HDAC3-214ENST00000495485 ZCCHC13Q8WW36 166 aaKnown RBP5.75□□□□□ -1.49
HDAC3-214ENST00000495485 FP248Q71RG6 208 aaPredicted RBP5.74□□□□□ -1.49
HDAC3-214ENST00000495485 CYSTM1Q9H1C7 97 aa5.73□□□□□ -1.49
HDAC3-214ENST00000495485 KRTAP16-1A8MUX0 517 aa5.71□□□□□ -1.5
HDAC3-214ENST00000495485 RPS28P62857 69 aaKnown RBP5.71□□□□□ -1.5
HDAC3-214ENST00000495485 SPANXA2-OT1Q8N9U9 137 aa5.7□□□□□ -1.5
HDAC3-214ENST00000495485 LRP2P98164 4655 aa5.69□□□□□ -1.5
HDAC3-214ENST00000495485 SERP1Q9Y6X1 66 aa5.68□□□□□ -1.5
HDAC3-214ENST00000495485 RETNLBQ9BQ08 111 aa5.66□□□□□ -1.5
HDAC3-214ENST00000495485 PRR4Q16378 134 aa5.65□□□□□ -1.5
HDAC3-214ENST00000495485 C9orf92A6NGG3 77 aa5.64□□□□□ -1.51
HDAC3-214ENST00000495485 A8MUU9 505 aa5.64□□□□□ -1.51
HDAC3-214ENST00000495485 Q5W150 140 aa5.64□□□□□ -1.51
HDAC3-214ENST00000495485 C20orf166-AS1Q96NR2 134 aa5.64□□□□□ -1.51
HDAC3-214ENST00000495485 CYP4F30PQ9H0H9 118 aa5.64□□□□□ -1.51
HDAC3-214ENST00000495485 IGLV7-46A0A075B6I9 117 aa5.63□□□□□ -1.51
HDAC3-214ENST00000495485 TPRXLQ17RH7 258 aa5.63□□□□□ -1.51
HDAC3-214ENST00000495485 KRTAP13-3Q3SY46 172 aa5.63□□□□□ -1.51
HDAC3-214ENST00000495485 PCOTHQ58A44 107 aa5.63□□□□□ -1.51
HDAC3-214ENST00000495485 IGKV2-30P06310 120 aa5.62□□□□□ -1.51
HDAC3-214ENST00000495485 Q75L30 129 aa5.61□□□□□ -1.51
HDAC3-214ENST00000495485 C7orf65Q6ZTY9 151 aa5.6□□□□□ -1.51
HDAC3-214ENST00000495485 ATP11AUNQ6ZP68 121 aa5.58□□□□□ -1.52
HDAC3-214ENST00000495485 LPAP08519 4548 aa5.58□□□□□ -1.52
HDAC3-214ENST00000495485 IGKV2D-30A0A075B6S6 120 aa5.57□□□□□ -1.52
HDAC3-214ENST00000495485 UBR4Q5T4S7 5183 aa5.57□□□□□ -1.52
HDAC3-214ENST00000495485 SMIM26A0A096LP01 95 aa5.55□□□□□ -1.52
HDAC3-214ENST00000495485 ACYP2P14621 99 aa5.55□□□□□ -1.52
HDAC3-214ENST00000495485 HRES1P13985 223 aa5.53□□□□□ -1.52
HDAC3-214ENST00000495485 RPL37P61927 97 aaKnown RBP5.52□□□□□ -1.53
HDAC3-214ENST00000495485 XP32Q5T750 250 aa5.5□□□□□ -1.53
HDAC3-214ENST00000495485 MUC17Q685J3 4493 aa5.49□□□□□ -1.53
HDAC3-214ENST00000495485 A8MUN3 132 aa5.49□□□□□ -1.53
HDAC3-214ENST00000495485 V9GYY9 64 aa5.49□□□□□ -1.53
HDAC3-214ENST00000495485 COA5Q86WW8 74 aa5.48□□□□□ -1.53
HDAC3-214ENST00000495485 DMAC1Q96GE9 116 aa5.48□□□□□ -1.53
HDAC3-214ENST00000495485 CHKB-CPT1BH3BT56 60 aa5.47□□□□□ -1.53
HDAC3-214ENST00000495485 SPINK7P58062 85 aa5.47□□□□□ -1.53
HDAC3-214ENST00000495485 RNF213Q63HN8 5207 aa5.46□□□□□ -1.54
HDAC3-214ENST00000495485 SEC61BP60468 96 aaKnown RBP5.46□□□□□ -1.54
HDAC3-214ENST00000495485 SPTSSBQ8NFR3 76 aa5.42□□□□□ -1.54
HDAC3-214ENST00000495485 Q1T7F1 81 aa5.41□□□□□ -1.54
HDAC3-214ENST00000495485 C4orf26Q17RF5 130 aa5.39□□□□□ -1.55
HDAC3-214ENST00000495485 MUC2Q02817 5179 aa5.38□□□□□ -1.55
HDAC3-214ENST00000495485 MPLKIPQ8TAP9 179 aa5.38□□□□□ -1.55
HDAC3-214ENST00000495485 COX6B2Q6YFQ2 88 aa5.37□□□□□ -1.55
HDAC3-214ENST00000495485 RBM12B-AS1Q9P1G2 102 aa5.33□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 62.7 ms