RNA–Protein interactions for RNA: ENST00000487428.1

PTPRE-209, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 3

Gene PTPRE, Length 325 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-209ENST00000487428 C8orf87E5RJ46 101 aa3.59□□□□□ -1.83
PTPRE-209ENST00000487428 IGKV4-1P06312 121 aa3.59□□□□□ -1.83
PTPRE-209ENST00000487428 A8MUU9 505 aa3.58□□□□□ -1.84
PTPRE-209ENST00000487428 A0A1B0GVX0 72 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 C9orf92A6NGG3 77 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 KRTAP16-1A8MUX0 517 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 A8MWP4 228 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 LINC00313P59037 77 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 NREPQ16612 68 aa3.57□□□□□ -1.84
PTPRE-209ENST00000487428 A0A0U1RQV1 116 aa3.56□□□□□ -1.84
PTPRE-209ENST00000487428 NDUFB1O75438 58 aa3.56□□□□□ -1.84
PTPRE-209ENST00000487428 FAM240AA0A1B0GVK7 77 aa3.55□□□□□ -1.84
PTPRE-209ENST00000487428 ETDBQ3ZM63 59 aa3.55□□□□□ -1.84
PTPRE-209ENST00000487428 PRR15Q8IV56 129 aa3.55□□□□□ -1.84
PTPRE-209ENST00000487428 ACYP1P07311 99 aa3.54□□□□□ -1.84
PTPRE-209ENST00000487428 DSCR10P59022 87 aa3.54□□□□□ -1.84
PTPRE-209ENST00000487428 Q6ZVQ6 151 aa3.54□□□□□ -1.84
PTPRE-209ENST00000487428 Q8N9P0 234 aaPredicted RBP3.54□□□□□ -1.84
PTPRE-209ENST00000487428 MUC2Q02817 5179 aa3.53□□□□□ -1.84
PTPRE-209ENST00000487428 IGKV3D-7A0A0C4DH55 119 aa3.53□□□□□ -1.84
PTPRE-209ENST00000487428 PCOTHQ58A44 107 aa3.53□□□□□ -1.84
PTPRE-209ENST00000487428 UBL5Q9BZL1 73 aa3.53□□□□□ -1.84
PTPRE-209ENST00000487428 RNF213Q63HN8 5207 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 DEFB116Q30KQ4 102 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 ATP11AUNQ6ZP68 121 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 NOTCH2NLQ7Z3S9 236 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 KRTAP4-1Q9BYQ7 146 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 C8orf17Q9NRJ1 99 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 LINC00846Q9NV44 126 aa3.52□□□□□ -1.85
PTPRE-209ENST00000487428 IGHV6-1A0A0B4J1U7 121 aa3.51□□□□□ -1.85
PTPRE-209ENST00000487428 BPY2O14599 106 aa3.51□□□□□ -1.85
PTPRE-209ENST00000487428 CXCL6P80162 114 aa3.51□□□□□ -1.85
PTPRE-209ENST00000487428 ANAPC13Q9BS18 74 aa3.51□□□□□ -1.85
PTPRE-209ENST00000487428 TMEM254Q8TBM7 123 aa3.5□□□□□ -1.85
PTPRE-209ENST00000487428 MMP24-AS1A0A0U1RRL7 71 aa3.49□□□□□ -1.85
PTPRE-209ENST00000487428 K7EQZ3 153 aa3.49□□□□□ -1.85
PTPRE-209ENST00000487428 C5orf47Q569G3 176 aa3.49□□□□□ -1.85
PTPRE-209ENST00000487428 KRTAP19-2Q3LHN2 52 aa3.48□□□□□ -1.85
PTPRE-209ENST00000487428 LCE2AQ5TA79 106 aaPredicted RBP3.48□□□□□ -1.85
PTPRE-209ENST00000487428 hDV103S1A0JD37 113 aa3.47□□□□□ -1.85
PTPRE-209ENST00000487428 ATP5EP2Q5VTU8 51 aa3.47□□□□□ -1.85
PTPRE-209ENST00000487428 MRPL34Q9BQ48 92 aaKnown RBP3.47□□□□□ -1.85
PTPRE-209ENST00000487428 ZCCHC13Q8WW36 166 aaKnown RBP3.46□□□□□ -1.86
PTPRE-209ENST00000487428 FAT4Q6V0I7 4981 aa3.46□□□□□ -1.86
PTPRE-209ENST00000487428 LCE2CQ5TA81 110 aa3.45□□□□□ -1.86
PTPRE-209ENST00000487428 SMIM20Q8N5G0 67 aa3.45□□□□□ -1.86
PTPRE-209ENST00000487428 MPLKIPQ8TAP9 179 aa3.44□□□□□ -1.86
PTPRE-209ENST00000487428 HCG22E2RYF7 251 aa3.43□□□□□ -1.86
PTPRE-209ENST00000487428 CASC2Q6XLA1 102 aa3.43□□□□□ -1.86
PTPRE-209ENST00000487428 LINC00643Q86TS7 51 aa3.43□□□□□ -1.86
PTPRE-209ENST00000487428 FLGP20930 4061 aaPredicted RBP3.43□□□□□ -1.86
PTPRE-209ENST00000487428 TP53AIP1Q9HCN2 124 aa3.42□□□□□ -1.86
PTPRE-209ENST00000487428 MT-ATP8P03928 68 aa3.41□□□□□ -1.86
PTPRE-209ENST00000487428 Q8N9L7 120 aa3.41□□□□□ -1.86
PTPRE-209ENST00000487428 IMUPQ9GZP8 106 aa3.41□□□□□ -1.86
PTPRE-209ENST00000487428 HRES1P13985 223 aa3.4□□□□□ -1.87
PTPRE-209ENST00000487428 RPS28P62857 69 aaKnown RBP3.4□□□□□ -1.87
PTPRE-209ENST00000487428 WFDC13Q8IUB5 93 aa3.4□□□□□ -1.87
PTPRE-209ENST00000487428 SPINK7P58062 85 aa3.39□□□□□ -1.87
PTPRE-209ENST00000487428 MT1HP80294 61 aa3.38□□□□□ -1.87
PTPRE-209ENST00000487428 UQCRQO14949 82 aa3.37□□□□□ -1.87
PTPRE-209ENST00000487428 RBM12B-AS1Q9P1G2 102 aa3.37□□□□□ -1.87
PTPRE-209ENST00000487428 CCDC179H3BU77 68 aa3.36□□□□□ -1.87
PTPRE-209ENST00000487428 NDUFS5O43920 106 aa3.36□□□□□ -1.87
PTPRE-209ENST00000487428 Q5W150 140 aa3.36□□□□□ -1.87
PTPRE-209ENST00000487428 C7orf65Q6ZTY9 151 aa3.36□□□□□ -1.87
PTPRE-209ENST00000487428 COX6B2Q6YFQ2 88 aa3.35□□□□□ -1.87
PTPRE-209ENST00000487428 TMEM258P61165 79 aa3.34□□□□□ -1.87
PTPRE-209ENST00000487428 ATOX1O00244 68 aa3.33□□□□□ -1.88
PTPRE-209ENST00000487428 IGKV2-30P06310 120 aa3.33□□□□□ -1.88
PTPRE-209ENST00000487428 TRAV22A0A0B4J277 110 aa3.32□□□□□ -1.88
PTPRE-209ENST00000487428 LORP23490 312 aaPredicted RBP3.32□□□□□ -1.88
PTPRE-209ENST00000487428 HIST1H4AP62805 103 aaKnown RBP3.32□□□□□ -1.88
PTPRE-209ENST00000487428 COX7CP15954 63 aa3.31□□□□□ -1.88
PTPRE-209ENST00000487428 LOC101927531A0A1B0GV80 90 aa3.3□□□□□ -1.88
PTPRE-209ENST00000487428 KRTAP10-6P60371 365 aaPredicted RBP3.3□□□□□ -1.88
PTPRE-209ENST00000487428 OCR1Q9BZK8 76 aa3.3□□□□□ -1.88
PTPRE-209ENST00000487428 A0A087WVE0 104 aa3.29□□□□□ -1.88
PTPRE-209ENST00000487428 FAM236AA0A1B0GUQ0 79 aa3.29□□□□□ -1.88
PTPRE-209ENST00000487428 FAM236BA0A1B0GV22 79 aa3.29□□□□□ -1.88
PTPRE-209ENST00000487428 PRO0628Q9UI54 55 aa3.29□□□□□ -1.88
PTPRE-209ENST00000487428 IGKV2D-30A0A075B6S6 120 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 FAM236DA0A1B0GTK5 79 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 H3BPC8 53 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 FAM236CP0DP71 79 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 H1FX-AS1Q4G0G2 97 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 CYP4F30PQ9H0H9 118 aa3.28□□□□□ -1.88
PTPRE-209ENST00000487428 LCE2DQ5TA82 110 aaPredicted RBP3.26□□□□□ -1.89
PTPRE-209ENST00000487428 M0R2T5 61 aa3.25□□□□□ -1.89
PTPRE-209ENST00000487428 ATP5EP56381 51 aaPredicted RBP3.25□□□□□ -1.89
PTPRE-209ENST00000487428 SERP2Q8N6R1 65 aa3.25□□□□□ -1.89
PTPRE-209ENST00000487428 KRTAP9-8Q9BYQ0 159 aa3.25□□□□□ -1.89
PTPRE-209ENST00000487428 V9GYY9 64 aa3.25□□□□□ -1.89
PTPRE-209ENST00000487428 H0Y9P7 68 aa3.24□□□□□ -1.89
PTPRE-209ENST00000487428 MP68P56378 58 aa3.23□□□□□ -1.89
PTPRE-209ENST00000487428 C4orf26Q17RF5 130 aa3.23□□□□□ -1.89
PTPRE-209ENST00000487428 KRTAP3-1Q9BYR8 98 aa3.23□□□□□ -1.89
PTPRE-209ENST00000487428 SERP1Q9Y6X1 66 aa3.23□□□□□ -1.89
PTPRE-209ENST00000487428 A8MUN3 132 aa3.22□□□□□ -1.89
PTPRE-209ENST00000487428 SEC61GP60059 68 aa3.22□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms