RNA–Protein interactions for RNA: ENST00000485983.6

SRGAP3-207, Transcript of SLIT-ROBO Rho GTPase activating protein 3, humanhuman

TSL 1 (best)

Gene SRGAP3, Length 5,677 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRGAP3-207ENST00000485983 Q6ZR54 194 aa6.23□□□□□ -1.41
SRGAP3-207ENST00000485983 STAB2Q8WWQ8 2551 aa6.23□□□□□ -1.41
SRGAP3-207ENST00000485983 RELNP78509 3460 aa6.23□□□□□ -1.41
SRGAP3-207ENST00000485983 PRAC1Q96KF2 57 aa6.2□□□□□ -1.42
SRGAP3-207ENST00000485983 PANO1I0J062 215 aa6.16□□□□□ -1.42
SRGAP3-207ENST00000485983 Q5VV11 94 aa6.16□□□□□ -1.42
SRGAP3-207ENST00000485983 ASH1LQ9NR48 2969 aaKnown RBP6.16□□□□□ -1.42
SRGAP3-207ENST00000485983 A0A087X002 238 aa6.16□□□□□ -1.42
SRGAP3-207ENST00000485983 ZANQ9Y493 2812 aa6.13□□□□□ -1.43
SRGAP3-207ENST00000485983 NSD1Q96L73 2696 aaPredicted RBP6.13□□□□□ -1.43
SRGAP3-207ENST00000485983 HIVEP1P15822 2718 aa6.13□□□□□ -1.43
SRGAP3-207ENST00000485983 ZFHX4Q86UP3 3567 aa6.13□□□□□ -1.43
SRGAP3-207ENST00000485983 CYSTM1Q9H1C7 97 aa6.12□□□□□ -1.43
SRGAP3-207ENST00000485983 RPS29P62273 56 aaKnown RBP6.12□□□□□ -1.43
SRGAP3-207ENST00000485983 APCP25054 2843 aa6.11□□□□□ -1.43
SRGAP3-207ENST00000485983 SPATA8Q6RVD6 105 aa6.11□□□□□ -1.43
SRGAP3-207ENST00000485983 KRTAP4-16G5E9R7 235 aaPredicted RBP6.09□□□□□ -1.44
SRGAP3-207ENST00000485983 CELSR2Q9HCU4 2923 aa6.08□□□□□ -1.44
SRGAP3-207ENST00000485983 KMT2BQ9UMN6 2715 aaPredicted RBP6.08□□□□□ -1.44
SRGAP3-207ENST00000485983 C20orf166-AS1Q96NR2 134 aa6.07□□□□□ -1.44
SRGAP3-207ENST00000485983 A8MUU9 505 aa6.07□□□□□ -1.44
SRGAP3-207ENST00000485983 ASB16-AS1Q495Z4 193 aa6.06□□□□□ -1.44
SRGAP3-207ENST00000485983 Q5XG85 94 aa6.05□□□□□ -1.44
SRGAP3-207ENST00000485983 KRTAP29-1A8MX34 341 aaPredicted RBP6.03□□□□□ -1.44
SRGAP3-207ENST00000485983 KRTAP21-3Q3LHN1 58 aa6.02□□□□□ -1.45
SRGAP3-207ENST00000485983 HRNRQ86YZ3 2850 aaPredicted RBP6.02□□□□□ -1.45
SRGAP3-207ENST00000485983 NIPBLQ6KC79 2804 aaeCLIP6.01□□□□□ -1.45
SRGAP3-207ENST00000485983 TENM4Q6N022 2769 aa6□□□□□ -1.45
SRGAP3-207ENST00000485983 Q6ZRN7 208 aaPredicted RBP6□□□□□ -1.45
SRGAP3-207ENST00000485983 DCHS2Q6V1P9 2916 aa5.99□□□□□ -1.45
SRGAP3-207ENST00000485983 NOTCH2NLQ7Z3S9 236 aa5.99□□□□□ -1.45
SRGAP3-207ENST00000485983 FBN2P35556 2912 aa5.98□□□□□ -1.45
SRGAP3-207ENST00000485983 NF1P21359 2839 aa5.96□□□□□ -1.46
SRGAP3-207ENST00000485983 KRTAP16-1A8MUX0 517 aa5.94□□□□□ -1.46
SRGAP3-207ENST00000485983 TNP1P09430 55 aa5.94□□□□□ -1.46
SRGAP3-207ENST00000485983 KRTAP13-2Q52LG2 175 aa5.93□□□□□ -1.46
SRGAP3-207ENST00000485983 KRTAP11-1Q8IUC1 163 aa5.93□□□□□ -1.46
SRGAP3-207ENST00000485983 SMG1Q96Q15 3661 aaKnown RBP5.92□□□□□ -1.46
SRGAP3-207ENST00000485983 A8MU10 97 aa5.89□□□□□ -1.47
SRGAP3-207ENST00000485983 NBPF19A0A087WUL8 3843 aa5.87□□□□□ -1.47
SRGAP3-207ENST00000485983 KRTAP13-1Q8IUC0 172 aa5.84□□□□□ -1.47
SRGAP3-207ENST00000485983 CSMD1Q96PZ7 3565 aa5.83□□□□□ -1.48
SRGAP3-207ENST00000485983 KRTAP25-1Q3LHN0 102 aa5.82□□□□□ -1.48
SRGAP3-207ENST00000485983 KRTAP7-1Q8IUC3 87 aa5.82□□□□□ -1.48
SRGAP3-207ENST00000485983 KRTAP10-8P60410 259 aa5.79□□□□□ -1.48
SRGAP3-207ENST00000485983 SVEP1Q4LDE5 3571 aa5.79□□□□□ -1.48
SRGAP3-207ENST00000485983 ZFHX3Q15911 3703 aa5.78□□□□□ -1.48
SRGAP3-207ENST00000485983 MXRA5Q9NR99 2828 aa5.77□□□□□ -1.49
SRGAP3-207ENST00000485983 C10orf95Q9H7T3 257 aa5.75□□□□□ -1.49
SRGAP3-207ENST00000485983 CSMD2Q7Z408 3487 aa5.75□□□□□ -1.49
SRGAP3-207ENST00000485983 CELSR1Q9NYQ6 3014 aa5.74□□□□□ -1.49
SRGAP3-207ENST00000485983 CUBNO60494 3623 aa5.74□□□□□ -1.49
SRGAP3-207ENST00000485983 A0A1B0GVY2 172 aa5.72□□□□□ -1.49
SRGAP3-207ENST00000485983 SPENQ96T58 3664 aaKnown RBP5.71□□□□□ -1.5
SRGAP3-207ENST00000485983 PP632Q6XCG6 107 aa5.7□□□□□ -1.5
SRGAP3-207ENST00000485983 XP32Q5T750 250 aa5.7□□□□□ -1.5
SRGAP3-207ENST00000485983 KRTAP10-10P60014 251 aa5.69□□□□□ -1.5
SRGAP3-207ENST00000485983 PRO2289Q9P1D8 64 aa5.68□□□□□ -1.5
SRGAP3-207ENST00000485983 A6NN06 94 aa5.67□□□□□ -1.5
SRGAP3-207ENST00000485983 NDUFAF8A1L188 74 aa5.66□□□□□ -1.5
SRGAP3-207ENST00000485983 TPRXLQ17RH7 258 aa5.65□□□□□ -1.5
SRGAP3-207ENST00000485983 PKD1L1Q8TDX9 2849 aa5.65□□□□□ -1.51
SRGAP3-207ENST00000485983 FBN1P35555 2871 aaKnown RBP5.63□□□□□ -1.51
SRGAP3-207ENST00000485983 PDZD2O15018 2839 aa5.61□□□□□ -1.51
SRGAP3-207ENST00000485983 KRTAP1-4P0C5Y4 121 aa5.6□□□□□ -1.51
SRGAP3-207ENST00000485983 TENM1Q9UKZ4 2725 aa5.6□□□□□ -1.51
SRGAP3-207ENST00000485983 OTOGQ6ZRI0 2925 aa5.58□□□□□ -1.52
SRGAP3-207ENST00000485983 TENM2Q9NT68 2774 aa5.58□□□□□ -1.52
SRGAP3-207ENST00000485983 TENM3Q9P273 2699 aa5.54□□□□□ -1.52
SRGAP3-207ENST00000485983 BSNQ9UPA5 3926 aa5.54□□□□□ -1.52
SRGAP3-207ENST00000485983 VWFP04275 2813 aa5.54□□□□□ -1.52
SRGAP3-207ENST00000485983 KRTAP13-3Q3SY46 172 aa5.48□□□□□ -1.53
SRGAP3-207ENST00000485983 P0C880 135 aa5.43□□□□□ -1.54
SRGAP3-207ENST00000485983 TGP01266 2768 aa5.41□□□□□ -1.54
SRGAP3-207ENST00000485983 TRRAPQ9Y4A5 3859 aa5.4□□□□□ -1.55
SRGAP3-207ENST00000485983 H0YAA0 97 aa5.39□□□□□ -1.55
SRGAP3-207ENST00000485983 ANK3Q12955 4377 aaKnown RBP5.38□□□□□ -1.55
SRGAP3-207ENST00000485983 VPS13CQ709C8 3753 aa5.35□□□□□ -1.55
SRGAP3-207ENST00000485983 SRRM2Q9UQ35 2752 aaKnown RBP5.29□□□□□ -1.56
SRGAP3-207ENST00000485983 ZNF469Q96JG9 3925 aaPredicted RBP5.2□□□□□ -1.58
SRGAP3-207ENST00000485983 KRTAP13-4Q3LI77 160 aa5.15□□□□□ -1.59
SRGAP3-207ENST00000485983 KRTAP12-2P59991 146 aa5.12□□□□□ -1.59
SRGAP3-207ENST00000485983 COL7A1Q02388 2944 aa5.1□□□□□ -1.59
SRGAP3-207ENST00000485983 FBN3Q75N90 2809 aa5.08□□□□□ -1.6
SRGAP3-207ENST00000485983 KRTAP15-1Q3LI76 137 aa5.07□□□□□ -1.6
SRGAP3-207ENST00000485983 AKAP9Q99996 3911 aa5.05□□□□□ -1.6
SRGAP3-207ENST00000485983 KRTAP12-1P59990 96 aa5.03□□□□□ -1.6
SRGAP3-207ENST00000485983 CSMD3Q7Z407 3707 aa5.01□□□□□ -1.61
SRGAP3-207ENST00000485983 HUWE1Q7Z6Z7 4374 aaKnown RBP4.97□□□□□ -1.61
SRGAP3-207ENST00000485983 MEGF8Q7Z7M0 2845 aa4.97□□□□□ -1.61
SRGAP3-207ENST00000485983 KRTAP4-5Q9BYR2 181 aa4.93□□□□□ -1.62
SRGAP3-207ENST00000485983 KRTAP3-1Q9BYR8 98 aa4.9□□□□□ -1.63
SRGAP3-207ENST00000485983 CRCT1Q9UGL9 99 aa4.86□□□□□ -1.63
SRGAP3-207ENST00000485983 KRTAP10-12P60413 245 aa4.81□□□□□ -1.64
SRGAP3-207ENST00000485983 DNHD1Q96M86 4753 aa4.81□□□□□ -1.64
SRGAP3-207ENST00000485983 MT1HL1P0DM35 61 aa4.8□□□□□ -1.64
SRGAP3-207ENST00000485983 DNAH9Q9NYC9 4486 aa4.78□□□□□ -1.64
SRGAP3-207ENST00000485983 KRTAP10-6P60371 365 aaPredicted RBP4.78□□□□□ -1.64
SRGAP3-207ENST00000485983 KRTAP23-1A1A580 65 aa4.76□□□□□ -1.65
SRGAP3-207ENST00000485983 LORP23490 312 aaPredicted RBP4.72□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 65.7 ms