RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 KRTAP9-1A8MXZ3 250 aaPredicted RBP7.95□□□□□ -1.14
CCDC88B-205ENST00000472524 M0R143 59 aa7.95□□□□□ -1.14
CCDC88B-205ENST00000472524 A0A1B0GVX0 72 aa7.94□□□□□ -1.14
CCDC88B-205ENST00000472524 KRTAP9-8Q9BYQ0 159 aa7.94□□□□□ -1.14
CCDC88B-205ENST00000472524 KRTAP9-7A8MTY7 169 aa7.93□□□□□ -1.14
CCDC88B-205ENST00000472524 C9JAW5 83 aa7.93□□□□□ -1.14
CCDC88B-205ENST00000472524 C8orf87E5RJ46 101 aa7.93□□□□□ -1.14
CCDC88B-205ENST00000472524 NAA38Q9BRA0 125 aaKnown RBP7.93□□□□□ -1.14
CCDC88B-205ENST00000472524 BATFQ16520 125 aa7.92□□□□□ -1.14
CCDC88B-205ENST00000472524 SSPOA2VEC9 5147 aa7.92□□□□□ -1.14
CCDC88B-205ENST00000472524 USH2AO75445 5202 aa7.91□□□□□ -1.14
CCDC88B-205ENST00000472524 HRES1P13985 223 aa7.9□□□□□ -1.14
CCDC88B-205ENST00000472524 ATXN8Q156A1 80 aa7.89□□□□□ -1.15
CCDC88B-205ENST00000472524 RBM12B-AS1Q9P1G2 102 aa7.89□□□□□ -1.15
CCDC88B-205ENST00000472524 J3KT08 172 aa7.88□□□□□ -1.15
CCDC88B-205ENST00000472524 C21orf62-AS1Q17RA5 79 aa7.88□□□□□ -1.15
CCDC88B-205ENST00000472524 Q6ZQT0 140 aa7.88□□□□□ -1.15
CCDC88B-205ENST00000472524 MPLKIPQ8TAP9 179 aa7.86□□□□□ -1.15
CCDC88B-205ENST00000472524 JMJD7-PLA2G4BH0Y9G9 81 aa7.84□□□□□ -1.15
CCDC88B-205ENST00000472524 NDUFB1O75438 58 aa7.83□□□□□ -1.16
CCDC88B-205ENST00000472524 ZCCHC13Q8WW36 166 aaKnown RBP7.83□□□□□ -1.16
CCDC88B-205ENST00000472524 LOC110117498A0A087WWA1 95 aa7.81□□□□□ -1.16
CCDC88B-205ENST00000472524 MT2AP02795 61 aa7.8□□□□□ -1.16
CCDC88B-205ENST00000472524 C14orf132Q9NPU4 83 aa7.8□□□□□ -1.16
CCDC88B-205ENST00000472524 A8MWP4 228 aa7.79□□□□□ -1.16
CCDC88B-205ENST00000472524 C8orf17Q9NRJ1 99 aa7.79□□□□□ -1.16
CCDC88B-205ENST00000472524 LYRM7Q5U5X0 104 aa7.78□□□□□ -1.16
CCDC88B-205ENST00000472524 Q8N9P0 234 aaPredicted RBP7.78□□□□□ -1.16
CCDC88B-205ENST00000472524 A0A1B0GW54 56 aa7.77□□□□□ -1.17
CCDC88B-205ENST00000472524 PDE6GP18545 87 aa7.77□□□□□ -1.17
CCDC88B-205ENST00000472524 SPINK7P58062 85 aa7.77□□□□□ -1.17
CCDC88B-205ENST00000472524 COL5A1-AS1Q5SY13 56 aa7.77□□□□□ -1.17
CCDC88B-205ENST00000472524 IGKV3D-7A0A0C4DH55 119 aa7.76□□□□□ -1.17
CCDC88B-205ENST00000472524 MTURNQ8N3F0 131 aa7.76□□□□□ -1.17
CCDC88B-205ENST00000472524 FCGBPQ9Y6R7 5405 aaPredicted RBP7.75□□□□□ -1.17
CCDC88B-205ENST00000472524 MT1FP04733 61 aa7.75□□□□□ -1.17
CCDC88B-205ENST00000472524 LCE2BO14633 110 aa7.74□□□□□ -1.17
CCDC88B-205ENST00000472524 TAX1BP3O14907 124 aa7.73□□□□□ -1.17
CCDC88B-205ENST00000472524 NREPQ16612 68 aa7.73□□□□□ -1.17
CCDC88B-205ENST00000472524 KRTAP19-1Q8IUB9 90 aa7.73□□□□□ -1.17
CCDC88B-205ENST00000472524 C9orf118A6NHY6 69 aa7.72□□□□□ -1.17
CCDC88B-205ENST00000472524 Q6ZVQ6 151 aa7.72□□□□□ -1.17
CCDC88B-205ENST00000472524 WFDC13Q8IUB5 93 aa7.7□□□□□ -1.18
CCDC88B-205ENST00000472524 PRR15Q8IV56 129 aa7.7□□□□□ -1.18
CCDC88B-205ENST00000472524 KRTAP9-3Q9BYQ3 159 aa7.7□□□□□ -1.18
CCDC88B-205ENST00000472524 KRTAP10-10P60014 251 aa7.69□□□□□ -1.18
CCDC88B-205ENST00000472524 MMP24-AS1A0A0U1RRL7 71 aa7.67□□□□□ -1.18
CCDC88B-205ENST00000472524 A0A1W2PPM0 123 aa7.67□□□□□ -1.18
CCDC88B-205ENST00000472524 MACF1Q9UPN3 7388 aaKnown RBP7.66□□□□□ -1.18
CCDC88B-205ENST00000472524 H3BT86 120 aa7.65□□□□□ -1.18
CCDC88B-205ENST00000472524 TMEM254Q8TBM7 123 aa7.65□□□□□ -1.18
CCDC88B-205ENST00000472524 MRPL34Q9BQ48 92 aaKnown RBP7.65□□□□□ -1.18
CCDC88B-205ENST00000472524 K7EQZ3 153 aa7.64□□□□□ -1.19
CCDC88B-205ENST00000472524 SYNE2Q8WXH0 6885 aaKnown RBP7.64□□□□□ -1.19
CCDC88B-205ENST00000472524 NDUFS5O43920 106 aa7.62□□□□□ -1.19
CCDC88B-205ENST00000472524 SPCS1Q9Y6A9 102 aa7.62□□□□□ -1.19
CCDC88B-205ENST00000472524 hDV103S1A0JD37 113 aa7.61□□□□□ -1.19
CCDC88B-205ENST00000472524 BPY2O14599 106 aa7.58□□□□□ -1.2
CCDC88B-205ENST00000472524 K7EP34 96 aa7.56□□□□□ -1.2
CCDC88B-205ENST00000472524 GTF2H5Q6ZYL4 71 aa7.56□□□□□ -1.2
CCDC88B-205ENST00000472524 IGKV2D-30A0A075B6S6 120 aa7.53□□□□□ -1.2
CCDC88B-205ENST00000472524 IGKV2-30P06310 120 aa7.53□□□□□ -1.2
CCDC88B-205ENST00000472524 A0A1B0GV90 55 aa7.52□□□□□ -1.21
CCDC88B-205ENST00000472524 Q8N9L7 120 aa7.52□□□□□ -1.21
CCDC88B-205ENST00000472524 H1FX-AS1Q4G0G2 97 aa7.5□□□□□ -1.21
CCDC88B-205ENST00000472524 Q5W150 140 aa7.5□□□□□ -1.21
CCDC88B-205ENST00000472524 KRTAP19-6Q3LI70 58 aa7.49□□□□□ -1.21
CCDC88B-205ENST00000472524 CASC2Q6XLA1 102 aa7.49□□□□□ -1.21
CCDC88B-205ENST00000472524 C7orf65Q6ZTY9 151 aa7.49□□□□□ -1.21
CCDC88B-205ENST00000472524 HCG22E2RYF7 251 aa7.48□□□□□ -1.21
CCDC88B-205ENST00000472524 SMCPP49901 116 aaPredicted RBP7.48□□□□□ -1.21
CCDC88B-205ENST00000472524 LINC00846Q9NV44 126 aa7.45□□□□□ -1.22
CCDC88B-205ENST00000472524 PRO0461Q9UI25 63 aa7.43□□□□□ -1.22
CCDC88B-205ENST00000472524 F8W1H4 67 aa7.42□□□□□ -1.22
CCDC88B-205ENST00000472524 UBL5Q9BZL1 73 aa7.4□□□□□ -1.22
CCDC88B-205ENST00000472524 CXCL6P80162 114 aa7.39□□□□□ -1.23
CCDC88B-205ENST00000472524 C4orf26Q17RF5 130 aa7.39□□□□□ -1.23
CCDC88B-205ENST00000472524 ETDBQ3ZM63 59 aa7.34□□□□□ -1.23
CCDC88B-205ENST00000472524 KRTAP6-3Q3LI67 103 aa7.31□□□□□ -1.24
CCDC88B-205ENST00000472524 C5orf47Q569G3 176 aa7.28□□□□□ -1.24
CCDC88B-205ENST00000472524 KRTAP3-1Q9BYR8 98 aa7.25□□□□□ -1.25
CCDC88B-205ENST00000472524 S4R3F8 94 aa7.25□□□□□ -1.25
CCDC88B-205ENST00000472524 C1orf64Q8NEQ6 169 aa7.24□□□□□ -1.25
CCDC88B-205ENST00000472524 FAM236AA0A1B0GUQ0 79 aa7.23□□□□□ -1.25
CCDC88B-205ENST00000472524 FAM236BA0A1B0GV22 79 aa7.23□□□□□ -1.25
CCDC88B-205ENST00000472524 TP53AIP1Q9HCN2 124 aa7.22□□□□□ -1.25
CCDC88B-205ENST00000472524 LCA10Q71F78 164 aa7.19□□□□□ -1.26
CCDC88B-205ENST00000472524 NEBP20929 6669 aa7.18□□□□□ -1.26
CCDC88B-205ENST00000472524 J3QR89 54 aa7.17□□□□□ -1.26
CCDC88B-205ENST00000472524 CSAG1Q6PB30 78 aa7.17□□□□□ -1.26
CCDC88B-205ENST00000472524 ACYP1P07311 99 aa7.14□□□□□ -1.27
CCDC88B-205ENST00000472524 FAM240AA0A1B0GVK7 77 aa7.12□□□□□ -1.27
CCDC88B-205ENST00000472524 CYP4F30PQ9H0H9 118 aa7.1□□□□□ -1.27
CCDC88B-205ENST00000472524 TRAV22A0A0B4J277 110 aa7.08□□□□□ -1.28
CCDC88B-205ENST00000472524 K7ERU9 68 aa7.08□□□□□ -1.28
CCDC88B-205ENST00000472524 Q5VV11 94 aa7.07□□□□□ -1.28
CCDC88B-205ENST00000472524 MT1BP07438 61 aa7.06□□□□□ -1.28
CCDC88B-205ENST00000472524 LOC101927531A0A1B0GV80 90 aa7.05□□□□□ -1.28
CCDC88B-205ENST00000472524 SPRR2GQ9BYE4 73 aa7.05□□□□□ -1.28
CCDC88B-205ENST00000472524 KRTAP3-3Q9BYR6 98 aa7.05□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms