RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 ANAPC11Q9NYG5 84 aa4.11□□□□□ -1.75
SYNE1-216ENST00000461872 SMR3BP02814 79 aaPredicted RBP4.09□□□□□ -1.76
SYNE1-216ENST00000461872 Q6ZSA8 131 aa4.07□□□□□ -1.76
SYNE1-216ENST00000461872 H3BS24 57 aa4.07□□□□□ -1.76
SYNE1-216ENST00000461872 EYSQ5T1H1 3165 aa4.07□□□□□ -1.76
SYNE1-216ENST00000461872 TENM4Q6N022 2769 aa4.05□□□□□ -1.76
SYNE1-216ENST00000461872 H1FX-AS1Q4G0G2 97 aa4.05□□□□□ -1.76
SYNE1-216ENST00000461872 CRYBG3Q68DQ2 2970 aa4.05□□□□□ -1.76
SYNE1-216ENST00000461872 NOTCH2NLQ7Z3S9 236 aa4.05□□□□□ -1.76
SYNE1-216ENST00000461872 PDZD2O15018 2839 aa4.04□□□□□ -1.76
SYNE1-216ENST00000461872 RPL37P61927 97 aaKnown RBP4.04□□□□□ -1.76
SYNE1-216ENST00000461872 ROMO1P60602 79 aa4.03□□□□□ -1.76
SYNE1-216ENST00000461872 KRTAP11-1Q8IUC1 163 aa4.02□□□□□ -1.77
SYNE1-216ENST00000461872 CSAG1Q6PB30 78 aa4.02□□□□□ -1.77
SYNE1-216ENST00000461872 COL6A3P12111 3177 aa4.01□□□□□ -1.77
SYNE1-216ENST00000461872 KRTAP13-3Q3SY46 172 aa4.01□□□□□ -1.77
SYNE1-216ENST00000461872 PANO1I0J062 215 aa4□□□□□ -1.77
SYNE1-216ENST00000461872 PLAC4Q8WY50 150 aa4□□□□□ -1.77
SYNE1-216ENST00000461872 A8MUU9 505 aa4□□□□□ -1.77
SYNE1-216ENST00000461872 LOC400499M0QZD8 3231 aa3.99□□□□□ -1.77
SYNE1-216ENST00000461872 CELSR3Q9NYQ7 3312 aa3.99□□□□□ -1.77
SYNE1-216ENST00000461872 TGP01266 2768 aa3.99□□□□□ -1.77
SYNE1-216ENST00000461872 C20orf166-AS1Q96NR2 134 aa3.99□□□□□ -1.77
SYNE1-216ENST00000461872 PRAC1Q96KF2 57 aa3.98□□□□□ -1.77
SYNE1-216ENST00000461872 KRTAP25-1Q3LHN0 102 aa3.98□□□□□ -1.77
SYNE1-216ENST00000461872 R4GN34 69 aa3.98□□□□□ -1.77
SYNE1-216ENST00000461872 M0QZ58 72 aa3.96□□□□□ -1.78
SYNE1-216ENST00000461872 KRTAP13-2Q52LG2 175 aa3.95□□□□□ -1.78
SYNE1-216ENST00000461872 S4R3F8 94 aa3.95□□□□□ -1.78
SYNE1-216ENST00000461872 CFAP47Q6ZTR5 3102 aa3.94□□□□□ -1.78
SYNE1-216ENST00000461872 KRTAP10-1P60331 282 aa3.92□□□□□ -1.78
SYNE1-216ENST00000461872 KRTAP16-1A8MUX0 517 aa3.92□□□□□ -1.78
SYNE1-216ENST00000461872 CELSR1Q9NYQ6 3014 aa3.91□□□□□ -1.78
SYNE1-216ENST00000461872 KRTAP21-3Q3LHN1 58 aa3.91□□□□□ -1.78
SYNE1-216ENST00000461872 TENM2Q9NT68 2774 aa3.9□□□□□ -1.79
SYNE1-216ENST00000461872 PKD1L1Q8TDX9 2849 aa3.89□□□□□ -1.79
SYNE1-216ENST00000461872 OTOGQ6ZRI0 2925 aa3.88□□□□□ -1.79
SYNE1-216ENST00000461872 KRTAP10-2P60368 255 aa3.88□□□□□ -1.79
SYNE1-216ENST00000461872 A8MU10 97 aa3.88□□□□□ -1.79
SYNE1-216ENST00000461872 KRTAP1-4P0C5Y4 121 aa3.87□□□□□ -1.79
SYNE1-216ENST00000461872 MEGF8Q7Z7M0 2845 aa3.86□□□□□ -1.79
SYNE1-216ENST00000461872 SEC61BP60468 96 aaKnown RBP3.84□□□□□ -1.79
SYNE1-216ENST00000461872 FBN1P35555 2871 aaKnown RBP3.82□□□□□ -1.8
SYNE1-216ENST00000461872 PP632Q6XCG6 107 aa3.81□□□□□ -1.8
SYNE1-216ENST00000461872 ZFHX4Q86UP3 3567 aa3.8□□□□□ -1.8
SYNE1-216ENST00000461872 H0YAA0 97 aa3.8□□□□□ -1.8
SYNE1-216ENST00000461872 Q5VSD8 79 aa3.8□□□□□ -1.8
SYNE1-216ENST00000461872 SPEGQ15772 3267 aa3.79□□□□□ -1.8
SYNE1-216ENST00000461872 SPENQ96T58 3664 aaKnown RBP3.78□□□□□ -1.8
SYNE1-216ENST00000461872 MYO15AQ9UKN7 3530 aa3.77□□□□□ -1.81
SYNE1-216ENST00000461872 ADM2Q7Z4H4 148 aa3.77□□□□□ -1.81
SYNE1-216ENST00000461872 SRRM2Q9UQ35 2752 aaKnown RBP3.77□□□□□ -1.81
SYNE1-216ENST00000461872 DMDP11532 3685 aa3.74□□□□□ -1.81
SYNE1-216ENST00000461872 LAMA5O15230 3695 aa3.73□□□□□ -1.81
SYNE1-216ENST00000461872 WDFY3Q8IZQ1 3526 aa3.72□□□□□ -1.81
SYNE1-216ENST00000461872 SMG1Q96Q15 3661 aaKnown RBP3.72□□□□□ -1.81
SYNE1-216ENST00000461872 AKAP9Q99996 3911 aa3.69□□□□□ -1.82
SYNE1-216ENST00000461872 BSNQ9UPA5 3926 aa3.69□□□□□ -1.82
SYNE1-216ENST00000461872 NDUFAF8A1L188 74 aa3.69□□□□□ -1.82
SYNE1-216ENST00000461872 TPRXLQ17RH7 258 aa3.68□□□□□ -1.82
SYNE1-216ENST00000461872 FBN3Q75N90 2809 aa3.67□□□□□ -1.82
SYNE1-216ENST00000461872 RELNP78509 3460 aa3.67□□□□□ -1.82
SYNE1-216ENST00000461872 C10orf95Q9H7T3 257 aa3.66□□□□□ -1.82
SYNE1-216ENST00000461872 XP32Q5T750 250 aa3.65□□□□□ -1.82
SYNE1-216ENST00000461872 DCHS1Q96JQ0 3298 aa3.64□□□□□ -1.83
SYNE1-216ENST00000461872 P0C880 135 aa3.63□□□□□ -1.83
SYNE1-216ENST00000461872 TNP1P09430 55 aa3.61□□□□□ -1.83
SYNE1-216ENST00000461872 ZFHX3Q15911 3703 aa3.6□□□□□ -1.83
SYNE1-216ENST00000461872 TRRAPQ9Y4A5 3859 aa3.6□□□□□ -1.83
SYNE1-216ENST00000461872 MUC3AQ02505 3323 aa3.58□□□□□ -1.84
SYNE1-216ENST00000461872 KRTAP10-8P60410 259 aa3.57□□□□□ -1.84
SYNE1-216ENST00000461872 A0A1B0GVY2 172 aa3.56□□□□□ -1.84
SYNE1-216ENST00000461872 KRTAP3-1Q9BYR8 98 aa3.56□□□□□ -1.84
SYNE1-216ENST00000461872 VPS13CQ709C8 3753 aa3.54□□□□□ -1.84
SYNE1-216ENST00000461872 ANK3Q12955 4377 aaKnown RBP3.54□□□□□ -1.84
SYNE1-216ENST00000461872 SVEP1Q4LDE5 3571 aa3.53□□□□□ -1.84
SYNE1-216ENST00000461872 CSMD1Q96PZ7 3565 aa3.53□□□□□ -1.84
SYNE1-216ENST00000461872 COL7A1Q02388 2944 aa3.53□□□□□ -1.84
SYNE1-216ENST00000461872 ASPMQ8IZT6 3477 aa3.52□□□□□ -1.85
SYNE1-216ENST00000461872 NBPF19A0A087WUL8 3843 aa3.52□□□□□ -1.85
SYNE1-216ENST00000461872 KRTAP10-6P60371 365 aaPredicted RBP3.52□□□□□ -1.85
SYNE1-216ENST00000461872 KRTAP23-1A1A580 65 aa3.49□□□□□ -1.85
SYNE1-216ENST00000461872 CUBNO60494 3623 aa3.49□□□□□ -1.85
SYNE1-216ENST00000461872 KRTAP12-1P59990 96 aa3.48□□□□□ -1.85
SYNE1-216ENST00000461872 KRTAP13-4Q3LI77 160 aa3.48□□□□□ -1.85
SYNE1-216ENST00000461872 ALMS1Q8TCU4 4167 aa3.43□□□□□ -1.86
SYNE1-216ENST00000461872 KRTAP12-2P59991 146 aa3.43□□□□□ -1.86
SYNE1-216ENST00000461872 KRTAP3-2Q9BYR7 98 aa3.43□□□□□ -1.86
SYNE1-216ENST00000461872 DNAH3Q8TD57 4116 aa3.42□□□□□ -1.86
SYNE1-216ENST00000461872 KRTAP15-1Q3LI76 137 aa3.41□□□□□ -1.86
SYNE1-216ENST00000461872 KRTAP10-4P60372 401 aaPredicted RBP3.41□□□□□ -1.86
SYNE1-216ENST00000461872 KRTAP3-3Q9BYR6 98 aa3.4□□□□□ -1.87
SYNE1-216ENST00000461872 PRO2289Q9P1D8 64 aa3.38□□□□□ -1.87
SYNE1-216ENST00000461872 ZNF469Q96JG9 3925 aaPredicted RBP3.35□□□□□ -1.87
SYNE1-216ENST00000461872 ANK2Q01484 3957 aa3.33□□□□□ -1.88
SYNE1-216ENST00000461872 KRTAP10-10P60014 251 aa3.32□□□□□ -1.88
SYNE1-216ENST00000461872 HECTD4Q9Y4D8 3996 aa3.32□□□□□ -1.88
SYNE1-216ENST00000461872 DNAH1Q9P2D7 4330 aa3.31□□□□□ -1.88
SYNE1-216ENST00000461872 HUWE1Q7Z6Z7 4374 aaKnown RBP3.3□□□□□ -1.88
SYNE1-216ENST00000461872 DNAH6Q9C0G6 4158 aa3.3□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 47.5 ms