RNA–Protein interactions for RNA: ENST00000435532.7

NEDD4-202, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene NEDD4, Length 5,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-202ENST00000435532 XIRP2A4UGR9 3374 aa8.4□□□□□ -1.07
NEDD4-202ENST00000435532 FLG2Q5D862 2391 aaPredicted RBP8.39□□□□□ -1.07
NEDD4-202ENST00000435532 NIPBLQ6KC79 2804 aaeCLIP8.39□□□□□ -1.07
NEDD4-202ENST00000435532 PRAC1Q96KF2 57 aa8.38□□□□□ -1.07
NEDD4-202ENST00000435532 NBEAQ8NFP9 2946 aa8.37□□□□□ -1.07
NEDD4-202ENST00000435532 VPS13AQ96RL7 3174 aa8.37□□□□□ -1.07
NEDD4-202ENST00000435532 KALRNO60229 2985 aa8.37□□□□□ -1.07
NEDD4-202ENST00000435532 LRBAP50851 2863 aa8.33□□□□□ -1.08
NEDD4-202ENST00000435532 TNP1P09430 55 aa8.32□□□□□ -1.08
NEDD4-202ENST00000435532 KRTAP13-3Q3SY46 172 aa8.29□□□□□ -1.08
NEDD4-202ENST00000435532 A0A0A0MQY5 61 aa8.28□□□□□ -1.08
NEDD4-202ENST00000435532 A8MU10 97 aa8.27□□□□□ -1.09
NEDD4-202ENST00000435532 KRTAP10-8P60410 259 aa8.25□□□□□ -1.09
NEDD4-202ENST00000435532 CRYBG3Q68DQ2 2970 aa8.24□□□□□ -1.09
NEDD4-202ENST00000435532 ZZEF1O43149 2961 aa8.23□□□□□ -1.09
NEDD4-202ENST00000435532 KRTAP10-10P60014 251 aa8.23□□□□□ -1.09
NEDD4-202ENST00000435532 LAMA1P25391 3075 aa8.21□□□□□ -1.1
NEDD4-202ENST00000435532 DMXL1Q9Y485 3027 aa8.2□□□□□ -1.1
NEDD4-202ENST00000435532 PRO2289Q9P1D8 64 aa8.15□□□□□ -1.1
NEDD4-202ENST00000435532 KRTAP16-1A8MUX0 517 aa8.12□□□□□ -1.11
NEDD4-202ENST00000435532 CELSR3Q9NYQ7 3312 aa8.1□□□□□ -1.11
NEDD4-202ENST00000435532 ADGRG4Q8IZF6 3080 aa8.09□□□□□ -1.11
NEDD4-202ENST00000435532 MXRA5Q9NR99 2828 aa8.09□□□□□ -1.12
NEDD4-202ENST00000435532 SPTBN5Q9NRC6 3674 aaKnown RBP8.07□□□□□ -1.12
NEDD4-202ENST00000435532 BOD1L1Q8NFC6 3051 aa8.07□□□□□ -1.12
NEDD4-202ENST00000435532 ZANQ9Y493 2812 aa8.07□□□□□ -1.12
NEDD4-202ENST00000435532 USP34Q70CQ2 3546 aa8.04□□□□□ -1.12
NEDD4-202ENST00000435532 NF1P21359 2839 aa8.04□□□□□ -1.12
NEDD4-202ENST00000435532 KRTAP25-1Q3LHN0 102 aa8.03□□□□□ -1.12
NEDD4-202ENST00000435532 HRNRQ86YZ3 2850 aaPredicted RBP8.02□□□□□ -1.13
NEDD4-202ENST00000435532 VCANP13611 3396 aa8.01□□□□□ -1.13
NEDD4-202ENST00000435532 PP632Q6XCG6 107 aa8.01□□□□□ -1.13
NEDD4-202ENST00000435532 CELSR2Q9HCU4 2923 aa8□□□□□ -1.13
NEDD4-202ENST00000435532 DCHS2Q6V1P9 2916 aa7.99□□□□□ -1.13
NEDD4-202ENST00000435532 TENM2Q9NT68 2774 aa7.98□□□□□ -1.13
NEDD4-202ENST00000435532 TENM3Q9P273 2699 aa7.97□□□□□ -1.13
NEDD4-202ENST00000435532 FREM2Q5SZK8 3169 aa7.93□□□□□ -1.14
NEDD4-202ENST00000435532 A6NN06 94 aa7.91□□□□□ -1.14
NEDD4-202ENST00000435532 TENM1Q9UKZ4 2725 aa7.9□□□□□ -1.14
NEDD4-202ENST00000435532 DNAH14Q0VDD8 3507 aa7.89□□□□□ -1.15
NEDD4-202ENST00000435532 PDZD2O15018 2839 aa7.84□□□□□ -1.15
NEDD4-202ENST00000435532 CFAP47Q6ZTR5 3102 aa7.83□□□□□ -1.16
NEDD4-202ENST00000435532 C10orf95Q9H7T3 257 aa7.82□□□□□ -1.16
NEDD4-202ENST00000435532 FBN2P35556 2912 aa7.77□□□□□ -1.16
NEDD4-202ENST00000435532 OTOGQ6ZRI0 2925 aa7.77□□□□□ -1.17
NEDD4-202ENST00000435532 P0C880 135 aa7.74□□□□□ -1.17
NEDD4-202ENST00000435532 H0YAA0 97 aa7.72□□□□□ -1.17
NEDD4-202ENST00000435532 PKD1L1Q8TDX9 2849 aa7.71□□□□□ -1.17
NEDD4-202ENST00000435532 CELSR1Q9NYQ6 3014 aa7.65□□□□□ -1.19
NEDD4-202ENST00000435532 SPEGQ15772 3267 aa7.65□□□□□ -1.19
NEDD4-202ENST00000435532 ANK3Q12955 4377 aaKnown RBP7.62□□□□□ -1.19
NEDD4-202ENST00000435532 H3BS24 57 aa7.61□□□□□ -1.19
NEDD4-202ENST00000435532 FBN3Q75N90 2809 aa7.61□□□□□ -1.19
NEDD4-202ENST00000435532 MT1HL1P0DM35 61 aa7.56□□□□□ -1.2
NEDD4-202ENST00000435532 DCHS1Q96JQ0 3298 aa7.54□□□□□ -1.2
NEDD4-202ENST00000435532 LOC400499M0QZD8 3231 aa7.54□□□□□ -1.2
NEDD4-202ENST00000435532 NBPF19A0A087WUL8 3843 aa7.51□□□□□ -1.21
NEDD4-202ENST00000435532 TGP01266 2768 aa7.5□□□□□ -1.21
NEDD4-202ENST00000435532 NDUFAF8A1L188 74 aa7.48□□□□□ -1.21
NEDD4-202ENST00000435532 VWFP04275 2813 aa7.42□□□□□ -1.22
NEDD4-202ENST00000435532 ALMS1Q8TCU4 4167 aa7.41□□□□□ -1.22
NEDD4-202ENST00000435532 KRTAP13-4Q3LI77 160 aa7.39□□□□□ -1.23
NEDD4-202ENST00000435532 KRTAP12-2P59991 146 aa7.37□□□□□ -1.23
NEDD4-202ENST00000435532 KRTAP4-5Q9BYR2 181 aa7.37□□□□□ -1.23
NEDD4-202ENST00000435532 FBN1P35555 2871 aaKnown RBP7.36□□□□□ -1.23
NEDD4-202ENST00000435532 MYO15AQ9UKN7 3530 aa7.35□□□□□ -1.23
NEDD4-202ENST00000435532 KRTAP3-1Q9BYR8 98 aa7.35□□□□□ -1.23
NEDD4-202ENST00000435532 KRTAP10-4P60372 401 aaPredicted RBP7.33□□□□□ -1.24
NEDD4-202ENST00000435532 RELNP78509 3460 aa7.32□□□□□ -1.24
NEDD4-202ENST00000435532 ZFHX3Q15911 3703 aa7.29□□□□□ -1.24
NEDD4-202ENST00000435532 KRTAP12-1P59990 96 aa7.28□□□□□ -1.24
NEDD4-202ENST00000435532 WDFY3Q8IZQ1 3526 aa7.25□□□□□ -1.25
NEDD4-202ENST00000435532 HUWE1Q7Z6Z7 4374 aaKnown RBP7.19□□□□□ -1.26
NEDD4-202ENST00000435532 SRRM2Q9UQ35 2752 aaKnown RBP7.18□□□□□ -1.26
NEDD4-202ENST00000435532 ASPMQ8IZT6 3477 aa7.18□□□□□ -1.26
NEDD4-202ENST00000435532 MUC3AQ02505 3323 aa7.12□□□□□ -1.27
NEDD4-202ENST00000435532 KRTAP15-1Q3LI76 137 aa7.11□□□□□ -1.27
NEDD4-202ENST00000435532 KRTAP10-6P60371 365 aaPredicted RBP7.08□□□□□ -1.28
NEDD4-202ENST00000435532 LAMA5O15230 3695 aa7.04□□□□□ -1.28
NEDD4-202ENST00000435532 KRTAP10-12P60413 245 aa6.97□□□□□ -1.29
NEDD4-202ENST00000435532 KRTAP3-3Q9BYR6 98 aa6.91□□□□□ -1.3
NEDD4-202ENST00000435532 MEGF8Q7Z7M0 2845 aa6.89□□□□□ -1.31
NEDD4-202ENST00000435532 TRRAPQ9Y4A5 3859 aa6.89□□□□□ -1.31
NEDD4-202ENST00000435532 DMDP11532 3685 aa6.88□□□□□ -1.31
NEDD4-202ENST00000435532 COL7A1Q02388 2944 aa6.86□□□□□ -1.31
NEDD4-202ENST00000435532 SMG1Q96Q15 3661 aaKnown RBP6.86□□□□□ -1.31
NEDD4-202ENST00000435532 DNAH9Q9NYC9 4486 aa6.86□□□□□ -1.31
NEDD4-202ENST00000435532 ZFHX4Q86UP3 3567 aa6.85□□□□□ -1.31
NEDD4-202ENST00000435532 KRTAP3-2Q9BYR7 98 aa6.85□□□□□ -1.31
NEDD4-202ENST00000435532 DNAH1Q9P2D7 4330 aa6.83□□□□□ -1.32
NEDD4-202ENST00000435532 CSMD1Q96PZ7 3565 aa6.82□□□□□ -1.32
NEDD4-202ENST00000435532 BSNQ9UPA5 3926 aa6.78□□□□□ -1.32
NEDD4-202ENST00000435532 CSMD2Q7Z408 3487 aa6.76□□□□□ -1.33
NEDD4-202ENST00000435532 SPENQ96T58 3664 aaKnown RBP6.7□□□□□ -1.34
NEDD4-202ENST00000435532 CRCT1Q9UGL9 99 aa6.69□□□□□ -1.34
NEDD4-202ENST00000435532 DNAH11Q96DT5 4516 aa6.69□□□□□ -1.34
NEDD4-202ENST00000435532 DNAH10Q8IVF4 4471 aa6.69□□□□□ -1.34
NEDD4-202ENST00000435532 KRTAP12-3P60328 96 aa6.67□□□□□ -1.34
NEDD4-202ENST00000435532 KRTAP23-1A1A580 65 aa6.66□□□□□ -1.34
NEDD4-202ENST00000435532 KRTAP8-1Q8IUC2 63 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 13.1 ms