RNA–Protein interactions for RNA: ENST00000428776.1

HMGB3P4-201, Transcript of high mobility group box 3 pseudogene 4, humanhuman

BASIC

Gene HMGB3P4, Length 514 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P4-201ENST00000428776 SCGB1A1P11684 91 aa7.16□□□□□ -1.26
HMGB3P4-201ENST00000428776 MYCBP2O75592 4640 aa7.16□□□□□ -1.26
HMGB3P4-201ENST00000428776 IGHV6-1A0A0B4J1U7 121 aa7.15□□□□□ -1.26
HMGB3P4-201ENST00000428776 HCG22E2RYF7 251 aa7.14□□□□□ -1.27
HMGB3P4-201ENST00000428776 FAM236AA0A1B0GUQ0 79 aa7.13□□□□□ -1.27
HMGB3P4-201ENST00000428776 FAM236BA0A1B0GV22 79 aa7.13□□□□□ -1.27
HMGB3P4-201ENST00000428776 C8orf17Q9NRJ1 99 aa7.13□□□□□ -1.27
HMGB3P4-201ENST00000428776 TNXBP22105 4242 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 MMP24-AS1A0A0U1RRL7 71 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 C8orf87E5RJ46 101 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 J3QL48 77 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 RETNLBQ9BQ08 111 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 ABCA13Q86UQ4 5058 aa7.12□□□□□ -1.27
HMGB3P4-201ENST00000428776 CASC2Q6XLA1 102 aa7.11□□□□□ -1.27
HMGB3P4-201ENST00000428776 FP248Q71RG6 208 aaPredicted RBP7.11□□□□□ -1.27
HMGB3P4-201ENST00000428776 LINC00313P59037 77 aa7.1□□□□□ -1.27
HMGB3P4-201ENST00000428776 hDV103S1A0JD37 113 aa7.09□□□□□ -1.27
HMGB3P4-201ENST00000428776 WFDC13Q8IUB5 93 aa7.09□□□□□ -1.27
HMGB3P4-201ENST00000428776 NOTCH2NLQ7Z3S9 236 aa7.08□□□□□ -1.28
HMGB3P4-201ENST00000428776 ATOX1O00244 68 aa7.07□□□□□ -1.28
HMGB3P4-201ENST00000428776 TMEM254Q8TBM7 123 aa7.07□□□□□ -1.28
HMGB3P4-201ENST00000428776 SMIM20Q8N5G0 67 aa7.04□□□□□ -1.28
HMGB3P4-201ENST00000428776 MRPL34Q9BQ48 92 aaKnown RBP7.04□□□□□ -1.28
HMGB3P4-201ENST00000428776 KRTAP3-3Q9BYR6 98 aa7.04□□□□□ -1.28
HMGB3P4-201ENST00000428776 KRTAP3-2Q9BYR7 98 aa7.04□□□□□ -1.28
HMGB3P4-201ENST00000428776 IGLV7-46A0A075B6I9 117 aa7.03□□□□□ -1.28
HMGB3P4-201ENST00000428776 KRTAP16-1A8MUX0 517 aa7.01□□□□□ -1.29
HMGB3P4-201ENST00000428776 PRR4Q16378 134 aa7□□□□□ -1.29
HMGB3P4-201ENST00000428776 ANAPC13Q9BS18 74 aa7□□□□□ -1.29
HMGB3P4-201ENST00000428776 OCR1Q9BZK8 76 aa7□□□□□ -1.29
HMGB3P4-201ENST00000428776 C9orf92A6NGG3 77 aa6.99□□□□□ -1.29
HMGB3P4-201ENST00000428776 TRAV7A0A075B6U4 112 aa6.98□□□□□ -1.29
HMGB3P4-201ENST00000428776 SERP2Q8N6R1 65 aa6.98□□□□□ -1.29
HMGB3P4-201ENST00000428776 Q8N9P0 234 aaPredicted RBP6.98□□□□□ -1.29
HMGB3P4-201ENST00000428776 TP53AIP1Q9HCN2 124 aa6.98□□□□□ -1.29
HMGB3P4-201ENST00000428776 NDUFS5O43920 106 aa6.97□□□□□ -1.29
HMGB3P4-201ENST00000428776 KRTAP13-3Q3SY46 172 aa6.96□□□□□ -1.3
HMGB3P4-201ENST00000428776 PCLOQ9Y6V0 5065 aa6.95□□□□□ -1.3
HMGB3P4-201ENST00000428776 UQCRQO14949 82 aa6.95□□□□□ -1.3
HMGB3P4-201ENST00000428776 TPRXLQ17RH7 258 aa6.93□□□□□ -1.3
HMGB3P4-201ENST00000428776 C20orf166-AS1Q96NR2 134 aa6.93□□□□□ -1.3
HMGB3P4-201ENST00000428776 A8MUU9 505 aa6.92□□□□□ -1.3
HMGB3P4-201ENST00000428776 COX7CP15954 63 aa6.92□□□□□ -1.3
HMGB3P4-201ENST00000428776 C5orf47Q569G3 176 aa6.91□□□□□ -1.3
HMGB3P4-201ENST00000428776 PCP4P48539 62 aa6.9□□□□□ -1.3
HMGB3P4-201ENST00000428776 Q75L30 129 aa6.89□□□□□ -1.31
HMGB3P4-201ENST00000428776 TRAV22A0A0B4J277 110 aa6.88□□□□□ -1.31
HMGB3P4-201ENST00000428776 XP32Q5T750 250 aa6.88□□□□□ -1.31
HMGB3P4-201ENST00000428776 H0Y9P7 68 aa6.86□□□□□ -1.31
HMGB3P4-201ENST00000428776 MP68P56378 58 aa6.86□□□□□ -1.31
HMGB3P4-201ENST00000428776 Q5W150 140 aa6.85□□□□□ -1.31
HMGB3P4-201ENST00000428776 H3BPC8 53 aa6.84□□□□□ -1.31
HMGB3P4-201ENST00000428776 ZCCHC13Q8WW36 166 aaKnown RBP6.84□□□□□ -1.31
HMGB3P4-201ENST00000428776 RPL37P61927 97 aaKnown RBP6.83□□□□□ -1.32
HMGB3P4-201ENST00000428776 C20orf197Q8N268 126 aa6.83□□□□□ -1.32
HMGB3P4-201ENST00000428776 CCDC179H3BU77 68 aa6.82□□□□□ -1.32
HMGB3P4-201ENST00000428776 A0A0U1RQV1 116 aa6.81□□□□□ -1.32
HMGB3P4-201ENST00000428776 ATP11AUNQ6ZP68 121 aa6.81□□□□□ -1.32
HMGB3P4-201ENST00000428776 LINC00208Q96KT6 92 aa6.81□□□□□ -1.32
HMGB3P4-201ENST00000428776 KLKP1Q107X0 134 aa6.8□□□□□ -1.32
HMGB3P4-201ENST00000428776 C1orf64Q8NEQ6 169 aa6.8□□□□□ -1.32
HMGB3P4-201ENST00000428776 LOC101927531A0A1B0GV80 90 aa6.78□□□□□ -1.32
HMGB3P4-201ENST00000428776 SNURFQ9Y675 71 aa6.78□□□□□ -1.32
HMGB3P4-201ENST00000428776 IGKV2-30P06310 120 aa6.74□□□□□ -1.33
HMGB3P4-201ENST00000428776 NDUFC1O43677 76 aa6.73□□□□□ -1.33
HMGB3P4-201ENST00000428776 CYP4F30PQ9H0H9 118 aa6.73□□□□□ -1.33
HMGB3P4-201ENST00000428776 HERC1Q15751 4861 aa6.71□□□□□ -1.34
HMGB3P4-201ENST00000428776 IGKV2D-30A0A075B6S6 120 aa6.71□□□□□ -1.34
HMGB3P4-201ENST00000428776 SEC61BP60468 96 aaKnown RBP6.71□□□□□ -1.34
HMGB3P4-201ENST00000428776 CYSTM1Q9H1C7 97 aa6.71□□□□□ -1.34
HMGB3P4-201ENST00000428776 PCOTHQ58A44 107 aa6.7□□□□□ -1.34
HMGB3P4-201ENST00000428776 C7orf65Q6ZTY9 151 aa6.7□□□□□ -1.34
HMGB3P4-201ENST00000428776 LPAP08519 4548 aa6.69□□□□□ -1.34
HMGB3P4-201ENST00000428776 H7BZZ5 65 aa6.68□□□□□ -1.34
HMGB3P4-201ENST00000428776 SPINK7P58062 85 aa6.68□□□□□ -1.34
HMGB3P4-201ENST00000428776 LRP2P98164 4655 aa6.67□□□□□ -1.34
HMGB3P4-201ENST00000428776 HMCN2Q8NDA2 5059 aa6.62□□□□□ -1.35
HMGB3P4-201ENST00000428776 HRES1P13985 223 aa6.61□□□□□ -1.35
HMGB3P4-201ENST00000428776 TMEM258P61165 79 aa6.61□□□□□ -1.35
HMGB3P4-201ENST00000428776 SPANXA2-OT1Q8N9U9 137 aa6.6□□□□□ -1.35
HMGB3P4-201ENST00000428776 ATP5EP56381 51 aaPredicted RBP6.56□□□□□ -1.36
HMGB3P4-201ENST00000428776 FAM236DA0A1B0GTK5 79 aa6.54□□□□□ -1.36
HMGB3P4-201ENST00000428776 FAM236CP0DP71 79 aa6.54□□□□□ -1.36
HMGB3P4-201ENST00000428776 C4orf26Q17RF5 130 aa6.54□□□□□ -1.36
HMGB3P4-201ENST00000428776 KRTAP4-1Q9BYQ7 146 aa6.51□□□□□ -1.37
HMGB3P4-201ENST00000428776 COX6B2Q6YFQ2 88 aa6.5□□□□□ -1.37
HMGB3P4-201ENST00000428776 MPLKIPQ8TAP9 179 aa6.49□□□□□ -1.37
HMGB3P4-201ENST00000428776 DMAC1Q96GE9 116 aa6.49□□□□□ -1.37
HMGB3P4-201ENST00000428776 A8MUN3 132 aa6.48□□□□□ -1.37
HMGB3P4-201ENST00000428776 RBM12B-AS1Q9P1G2 102 aa6.48□□□□□ -1.37
HMGB3P4-201ENST00000428776 MUC17Q685J3 4493 aa6.46□□□□□ -1.37
HMGB3P4-201ENST00000428776 ACYP2P14621 99 aa6.46□□□□□ -1.38
HMGB3P4-201ENST00000428776 KRTAP3-1Q9BYR8 98 aa6.45□□□□□ -1.38
HMGB3P4-201ENST00000428776 SERP1Q9Y6X1 66 aa6.4□□□□□ -1.38
HMGB3P4-201ENST00000428776 H1FX-AS1Q4G0G2 97 aa6.38□□□□□ -1.39
HMGB3P4-201ENST00000428776 COA5Q86WW8 74 aa6.38□□□□□ -1.39
HMGB3P4-201ENST00000428776 RPS28P62857 69 aaKnown RBP6.36□□□□□ -1.39
HMGB3P4-201ENST00000428776 CHKB-CPT1BH3BT56 60 aa6.33□□□□□ -1.4
HMGB3P4-201ENST00000428776 KRTAP19-2Q3LHN2 52 aa6.33□□□□□ -1.4
HMGB3P4-201ENST00000428776 UBR4Q5T4S7 5183 aa6.31□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms