RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 DCHS1Q96JQ0 3298 aa6.42□□□□□ -1.38
UBR4-205ENST00000417040 A0A1B0GVY2 172 aa6.42□□□□□ -1.38
UBR4-205ENST00000417040 DMXL2Q8TDJ6 3036 aa6.42□□□□□ -1.38
UBR4-205ENST00000417040 ASH1LQ9NR48 2969 aaKnown RBP6.42□□□□□ -1.38
UBR4-205ENST00000417040 KRTAP10-8P60410 259 aa6.4□□□□□ -1.38
UBR4-205ENST00000417040 WDFY3Q8IZQ1 3526 aa6.39□□□□□ -1.39
UBR4-205ENST00000417040 SETXQ7Z333 2677 aaKnown RBP6.38□□□□□ -1.39
UBR4-205ENST00000417040 APCP25054 2843 aa6.37□□□□□ -1.39
UBR4-205ENST00000417040 EYSQ5T1H1 3165 aa6.37□□□□□ -1.39
UBR4-205ENST00000417040 ATMQ13315 3056 aa6.37□□□□□ -1.39
UBR4-205ENST00000417040 COL6A5A8TX70 2615 aa6.35□□□□□ -1.39
UBR4-205ENST00000417040 TEP1Q99973 2627 aaKnown RBP6.35□□□□□ -1.39
UBR4-205ENST00000417040 BAHCC1Q9P281 2608 aa6.35□□□□□ -1.39
UBR4-205ENST00000417040 P0C880 135 aa6.33□□□□□ -1.4
UBR4-205ENST00000417040 NOTCH1P46531 2555 aa6.33□□□□□ -1.4
UBR4-205ENST00000417040 KRTAP1-4P0C5Y4 121 aa6.33□□□□□ -1.4
UBR4-205ENST00000417040 ASPMQ8IZT6 3477 aa6.32□□□□□ -1.4
UBR4-205ENST00000417040 ITPR1Q14643 2758 aa6.32□□□□□ -1.4
UBR4-205ENST00000417040 XP32Q5T750 250 aa6.31□□□□□ -1.4
UBR4-205ENST00000417040 ZNF292O60281 2723 aa6.31□□□□□ -1.4
UBR4-205ENST00000417040 TACC2O95359 2948 aa6.3□□□□□ -1.4
UBR4-205ENST00000417040 STAB2Q8WWQ8 2551 aa6.3□□□□□ -1.4
UBR4-205ENST00000417040 STAB1Q9NY15 2570 aa6.29□□□□□ -1.4
UBR4-205ENST00000417040 HIVEP1P15822 2718 aa6.26□□□□□ -1.41
UBR4-205ENST00000417040 COL12A1Q99715 3063 aa6.26□□□□□ -1.41
UBR4-205ENST00000417040 CSMD1Q96PZ7 3565 aa6.26□□□□□ -1.41
UBR4-205ENST00000417040 ZFHX4Q86UP3 3567 aa6.26□□□□□ -1.41
UBR4-205ENST00000417040 CRYBG3Q68DQ2 2970 aa6.24□□□□□ -1.41
UBR4-205ENST00000417040 PP632Q6XCG6 107 aa6.24□□□□□ -1.41
UBR4-205ENST00000417040 UTP20O75691 2785 aaKnown RBP6.23□□□□□ -1.41
UBR4-205ENST00000417040 UBR5O95071 2799 aaPredicted RBP6.22□□□□□ -1.41
UBR4-205ENST00000417040 ITPR2Q14571 2701 aa6.22□□□□□ -1.41
UBR4-205ENST00000417040 IGSF10Q6WRI0 2623 aa6.21□□□□□ -1.42
UBR4-205ENST00000417040 NSD1Q96L73 2696 aaPredicted RBP6.2□□□□□ -1.42
UBR4-205ENST00000417040 LOC400499M0QZD8 3231 aa6.19□□□□□ -1.42
UBR4-205ENST00000417040 KRTAP12-2P59991 146 aa6.16□□□□□ -1.42
UBR4-205ENST00000417040 TNRC18O15417 2968 aaPredicted RBP6.14□□□□□ -1.43
UBR4-205ENST00000417040 DMXL1Q9Y485 3027 aa6.11□□□□□ -1.43
UBR4-205ENST00000417040 LAMA5O15230 3695 aa6.1□□□□□ -1.43
UBR4-205ENST00000417040 KRTAP13-3Q3SY46 172 aa6.09□□□□□ -1.44
UBR4-205ENST00000417040 KRTAP10-10P60014 251 aa6.06□□□□□ -1.44
UBR4-205ENST00000417040 RELNP78509 3460 aa6.06□□□□□ -1.44
UBR4-205ENST00000417040 CELSR2Q9HCU4 2923 aa6.06□□□□□ -1.44
UBR4-205ENST00000417040 TPRXLQ17RH7 258 aa6.05□□□□□ -1.44
UBR4-205ENST00000417040 HRNRQ86YZ3 2850 aaPredicted RBP6.03□□□□□ -1.44
UBR4-205ENST00000417040 KMT2BQ9UMN6 2715 aaPredicted RBP6.03□□□□□ -1.44
UBR4-205ENST00000417040 SMG1Q96Q15 3661 aaKnown RBP6.03□□□□□ -1.44
UBR4-205ENST00000417040 DCHS2Q6V1P9 2916 aa5.96□□□□□ -1.46
UBR4-205ENST00000417040 FBN2P35556 2912 aa5.94□□□□□ -1.46
UBR4-205ENST00000417040 KRTAP12-1P59990 96 aa5.93□□□□□ -1.46
UBR4-205ENST00000417040 SVEP1Q4LDE5 3571 aa5.92□□□□□ -1.46
UBR4-205ENST00000417040 FLNCQ14315 2725 aa5.91□□□□□ -1.46
UBR4-205ENST00000417040 DMDP11532 3685 aa5.89□□□□□ -1.47
UBR4-205ENST00000417040 KRTAP3-1Q9BYR8 98 aa5.89□□□□□ -1.47
UBR4-205ENST00000417040 ZANQ9Y493 2812 aa5.88□□□□□ -1.47
UBR4-205ENST00000417040 CELSR1Q9NYQ6 3014 aa5.88□□□□□ -1.47
UBR4-205ENST00000417040 TGP01266 2768 aa5.87□□□□□ -1.47
UBR4-205ENST00000417040 NBPF19A0A087WUL8 3843 aa5.87□□□□□ -1.47
UBR4-205ENST00000417040 KRTAP13-4Q3LI77 160 aa5.86□□□□□ -1.47
UBR4-205ENST00000417040 PRO2289Q9P1D8 64 aa5.86□□□□□ -1.47
UBR4-205ENST00000417040 NF1P21359 2839 aa5.83□□□□□ -1.48
UBR4-205ENST00000417040 SPENQ96T58 3664 aaKnown RBP5.79□□□□□ -1.48
UBR4-205ENST00000417040 NIPBLQ6KC79 2804 aaeCLIP5.76□□□□□ -1.49
UBR4-205ENST00000417040 CUBNO60494 3623 aa5.75□□□□□ -1.49
UBR4-205ENST00000417040 KRTAP10-6P60371 365 aaPredicted RBP5.71□□□□□ -1.5
UBR4-205ENST00000417040 MXRA5Q9NR99 2828 aa5.7□□□□□ -1.5
UBR4-205ENST00000417040 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
UBR4-205ENST00000417040 KRTAP21-3Q3LHN1 58 aa5.69□□□□□ -1.5
UBR4-205ENST00000417040 TENM4Q6N022 2769 aa5.68□□□□□ -1.5
UBR4-205ENST00000417040 TENM2Q9NT68 2774 aa5.67□□□□□ -1.5
UBR4-205ENST00000417040 ANK3Q12955 4377 aaKnown RBP5.62□□□□□ -1.51
UBR4-205ENST00000417040 TENM1Q9UKZ4 2725 aa5.62□□□□□ -1.51
UBR4-205ENST00000417040 TENM3Q9P273 2699 aa5.57□□□□□ -1.52
UBR4-205ENST00000417040 CSMD2Q7Z408 3487 aa5.54□□□□□ -1.52
UBR4-205ENST00000417040 BSNQ9UPA5 3926 aa5.5□□□□□ -1.53
UBR4-205ENST00000417040 VPS13CQ709C8 3753 aa5.5□□□□□ -1.53
UBR4-205ENST00000417040 KRTAP3-2Q9BYR7 98 aa5.49□□□□□ -1.53
UBR4-205ENST00000417040 KRTAP3-3Q9BYR6 98 aa5.49□□□□□ -1.53
UBR4-205ENST00000417040 PDZD2O15018 2839 aa5.48□□□□□ -1.53
UBR4-205ENST00000417040 ZFHX3Q15911 3703 aa5.47□□□□□ -1.53
UBR4-205ENST00000417040 CRCT1Q9UGL9 99 aa5.47□□□□□ -1.53
UBR4-205ENST00000417040 VWFP04275 2813 aa5.44□□□□□ -1.54
UBR4-205ENST00000417040 HUWE1Q7Z6Z7 4374 aaKnown RBP5.43□□□□□ -1.54
UBR4-205ENST00000417040 MUC3AQ02505 3323 aa5.42□□□□□ -1.54
UBR4-205ENST00000417040 TRRAPQ9Y4A5 3859 aa5.42□□□□□ -1.54
UBR4-205ENST00000417040 PKD1L1Q8TDX9 2849 aa5.4□□□□□ -1.54
UBR4-205ENST00000417040 INE1O15225 51 aa5.39□□□□□ -1.55
UBR4-205ENST00000417040 CSMD3Q7Z407 3707 aa5.37□□□□□ -1.55
UBR4-205ENST00000417040 KRTAP10-12P60413 245 aa5.32□□□□□ -1.56
UBR4-205ENST00000417040 AKAP9Q99996 3911 aa5.31□□□□□ -1.56
UBR4-205ENST00000417040 MEGF8Q7Z7M0 2845 aa5.29□□□□□ -1.56
UBR4-205ENST00000417040 FBN3Q75N90 2809 aa5.29□□□□□ -1.56
UBR4-205ENST00000417040 LCE3AQ5TA76 89 aa5.28□□□□□ -1.56
UBR4-205ENST00000417040 LORP23490 312 aaPredicted RBP5.27□□□□□ -1.57
UBR4-205ENST00000417040 MT1HL1P0DM35 61 aa5.26□□□□□ -1.57
UBR4-205ENST00000417040 FBN1P35555 2871 aaKnown RBP5.25□□□□□ -1.57
UBR4-205ENST00000417040 SRRM2Q9UQ35 2752 aaKnown RBP5.21□□□□□ -1.57
UBR4-205ENST00000417040 KRTAP12-3P60328 96 aa5.2□□□□□ -1.58
UBR4-205ENST00000417040 KRTAP4-5Q9BYR2 181 aa5.18□□□□□ -1.58
UBR4-205ENST00000417040 OTOGQ6ZRI0 2925 aa5.14□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 46.2 ms