RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 BATFQ16520 125 aa9.72□□□□□ -0.85
SF3A1-202ENST00000411423 C9JAW5 83 aa9.71□□□□□ -0.86
SF3A1-202ENST00000411423 TAX1BP3O14907 124 aa9.71□□□□□ -0.86
SF3A1-202ENST00000411423 C9orf118A6NHY6 69 aa9.7□□□□□ -0.86
SF3A1-202ENST00000411423 A0A1B0GVX0 72 aa9.69□□□□□ -0.86
SF3A1-202ENST00000411423 Q6ZQT0 140 aa9.69□□□□□ -0.86
SF3A1-202ENST00000411423 LOC110117498A0A087WWA1 95 aa9.65□□□□□ -0.86
SF3A1-202ENST00000411423 A0A1W2PPM0 123 aa9.65□□□□□ -0.86
SF3A1-202ENST00000411423 C8orf87E5RJ46 101 aa9.64□□□□□ -0.87
SF3A1-202ENST00000411423 JMJD7-PLA2G4BH0Y9G9 81 aa9.63□□□□□ -0.87
SF3A1-202ENST00000411423 C14orf132Q9NPU4 83 aa9.63□□□□□ -0.87
SF3A1-202ENST00000411423 HRES1P13985 223 aa9.62□□□□□ -0.87
SF3A1-202ENST00000411423 CRCT1Q9UGL9 99 aa9.62□□□□□ -0.87
SF3A1-202ENST00000411423 J3KT08 172 aa9.6□□□□□ -0.87
SF3A1-202ENST00000411423 MPLKIPQ8TAP9 179 aa9.6□□□□□ -0.87
SF3A1-202ENST00000411423 C21orf62-AS1Q17RA5 79 aa9.59□□□□□ -0.87
SF3A1-202ENST00000411423 H3BT86 120 aa9.58□□□□□ -0.88
SF3A1-202ENST00000411423 A0A1B0GW54 56 aa9.57□□□□□ -0.88
SF3A1-202ENST00000411423 PDE6GP18545 87 aa9.56□□□□□ -0.88
SF3A1-202ENST00000411423 COL5A1-AS1Q5SY13 56 aa9.56□□□□□ -0.88
SF3A1-202ENST00000411423 IGKV3D-7A0A0C4DH55 119 aa9.55□□□□□ -0.88
SF3A1-202ENST00000411423 MTURNQ8N3F0 131 aa9.55□□□□□ -0.88
SF3A1-202ENST00000411423 KRTAP9-8Q9BYQ0 159 aa9.55□□□□□ -0.88
SF3A1-202ENST00000411423 A8MWP4 228 aa9.53□□□□□ -0.88
SF3A1-202ENST00000411423 Q8N9P0 234 aaPredicted RBP9.53□□□□□ -0.88
SF3A1-202ENST00000411423 ZCCHC13Q8WW36 166 aaKnown RBP9.53□□□□□ -0.88
SF3A1-202ENST00000411423 C8orf17Q9NRJ1 99 aa9.53□□□□□ -0.88
SF3A1-202ENST00000411423 NDUFB1O75438 58 aa9.5□□□□□ -0.89
SF3A1-202ENST00000411423 SPCS1Q9Y6A9 102 aa9.5□□□□□ -0.89
SF3A1-202ENST00000411423 FAM236DA0A1B0GTK5 79 aa9.49□□□□□ -0.89
SF3A1-202ENST00000411423 FAM236CP0DP71 79 aa9.49□□□□□ -0.89
SF3A1-202ENST00000411423 NREPQ16612 68 aa9.46□□□□□ -0.9
SF3A1-202ENST00000411423 RBM12B-AS1Q9P1G2 102 aa9.46□□□□□ -0.9
SF3A1-202ENST00000411423 SPINK7P58062 85 aa9.45□□□□□ -0.9
SF3A1-202ENST00000411423 PRR15Q8IV56 129 aa9.45□□□□□ -0.9
SF3A1-202ENST00000411423 MMP24-AS1A0A0U1RRL7 71 aa9.43□□□□□ -0.9
SF3A1-202ENST00000411423 SMCPP49901 116 aaPredicted RBP9.43□□□□□ -0.9
SF3A1-202ENST00000411423 Q6ZVQ6 151 aa9.43□□□□□ -0.9
SF3A1-202ENST00000411423 K7EP34 96 aa9.42□□□□□ -0.9
SF3A1-202ENST00000411423 PRO0461Q9UI25 63 aa9.42□□□□□ -0.9
SF3A1-202ENST00000411423 MT2AP02795 61 aa9.41□□□□□ -0.9
SF3A1-202ENST00000411423 PCP4L1A6NKN8 68 aa9.4□□□□□ -0.9
SF3A1-202ENST00000411423 USH2AO75445 5202 aa9.39□□□□□ -0.91
SF3A1-202ENST00000411423 K7EQZ3 153 aa9.39□□□□□ -0.91
SF3A1-202ENST00000411423 MT1FP04733 61 aa9.35□□□□□ -0.91
SF3A1-202ENST00000411423 TMEM254Q8TBM7 123 aa9.35□□□□□ -0.91
SF3A1-202ENST00000411423 MRPL34Q9BQ48 92 aaKnown RBP9.35□□□□□ -0.91
SF3A1-202ENST00000411423 GTF2H5Q6ZYL4 71 aa9.32□□□□□ -0.92
SF3A1-202ENST00000411423 SSPOA2VEC9 5147 aa9.32□□□□□ -0.92
SF3A1-202ENST00000411423 WFDC13Q8IUB5 93 aa9.31□□□□□ -0.92
SF3A1-202ENST00000411423 hDV103S1A0JD37 113 aa9.3□□□□□ -0.92
SF3A1-202ENST00000411423 BPY2O14599 106 aa9.29□□□□□ -0.92
SF3A1-202ENST00000411423 Q8N9L7 120 aa9.28□□□□□ -0.92
SF3A1-202ENST00000411423 F8W1H4 67 aa9.27□□□□□ -0.93
SF3A1-202ENST00000411423 KRTAP9-3Q9BYQ3 159 aa9.25□□□□□ -0.93
SF3A1-202ENST00000411423 Q5W150 140 aa9.24□□□□□ -0.93
SF3A1-202ENST00000411423 LCE2BO14633 110 aa9.23□□□□□ -0.93
SF3A1-202ENST00000411423 NDUFS5O43920 106 aa9.23□□□□□ -0.93
SF3A1-202ENST00000411423 KRTAP10-10P60014 251 aa9.21□□□□□ -0.94
SF3A1-202ENST00000411423 LINC00846Q9NV44 126 aa9.21□□□□□ -0.94
SF3A1-202ENST00000411423 ETDBQ3ZM63 59 aa9.16□□□□□ -0.94
SF3A1-202ENST00000411423 CASC2Q6XLA1 102 aa9.16□□□□□ -0.94
SF3A1-202ENST00000411423 HCG22E2RYF7 251 aa9.14□□□□□ -0.95
SF3A1-202ENST00000411423 IGKV2D-30A0A075B6S6 120 aa9.13□□□□□ -0.95
SF3A1-202ENST00000411423 IGKV2-30P06310 120 aa9.13□□□□□ -0.95
SF3A1-202ENST00000411423 UBL5Q9BZL1 73 aa9.12□□□□□ -0.95
SF3A1-202ENST00000411423 H1FX-AS1Q4G0G2 97 aa9.09□□□□□ -0.95
SF3A1-202ENST00000411423 C7orf65Q6ZTY9 151 aa9.09□□□□□ -0.95
SF3A1-202ENST00000411423 FCGBPQ9Y6R7 5405 aaPredicted RBP9.06□□□□□ -0.96
SF3A1-202ENST00000411423 KRTAP19-1Q8IUB9 90 aa9.03□□□□□ -0.96
SF3A1-202ENST00000411423 CXCL6P80162 114 aa9.02□□□□□ -0.97
SF3A1-202ENST00000411423 FAM240AA0A1B0GVK7 77 aa9.01□□□□□ -0.97
SF3A1-202ENST00000411423 C4orf26Q17RF5 130 aa9□□□□□ -0.97
SF3A1-202ENST00000411423 KRTAP9-1A8MXZ3 250 aaPredicted RBP8.99□□□□□ -0.97
SF3A1-202ENST00000411423 ACYP1P07311 99 aa8.99□□□□□ -0.97
SF3A1-202ENST00000411423 A0A1B0GV90 55 aa8.96□□□□□ -0.98
SF3A1-202ENST00000411423 KRTAP3-1Q9BYR8 98 aa8.95□□□□□ -0.98
SF3A1-202ENST00000411423 KRTAP9-7A8MTY7 169 aa8.93□□□□□ -0.98
SF3A1-202ENST00000411423 ATP5EP2Q5VTU8 51 aa8.87□□□□□ -0.99
SF3A1-202ENST00000411423 KRTAP19-6Q3LI70 58 aa8.84□□□□□ -0.99
SF3A1-202ENST00000411423 TP53AIP1Q9HCN2 124 aa8.83□□□□□ -1
SF3A1-202ENST00000411423 C5orf47Q569G3 176 aa8.82□□□□□ -1
SF3A1-202ENST00000411423 C1orf64Q8NEQ6 169 aa8.81□□□□□ -1
SF3A1-202ENST00000411423 LINC00643Q86TS7 51 aa8.77□□□□□ -1.01
SF3A1-202ENST00000411423 S4R3F8 94 aa8.77□□□□□ -1.01
SF3A1-202ENST00000411423 LCA10Q71F78 164 aa8.76□□□□□ -1.01
SF3A1-202ENST00000411423 MACF1Q9UPN3 7388 aaKnown RBP8.73□□□□□ -1.01
SF3A1-202ENST00000411423 CYP4F30PQ9H0H9 118 aa8.73□□□□□ -1.01
SF3A1-202ENST00000411423 KRTAP3-3Q9BYR6 98 aa8.7□□□□□ -1.02
SF3A1-202ENST00000411423 A0A087WVE0 104 aa8.69□□□□□ -1.02
SF3A1-202ENST00000411423 J3QR89 54 aa8.69□□□□□ -1.02
SF3A1-202ENST00000411423 TRAV22A0A0B4J277 110 aa8.68□□□□□ -1.02
SF3A1-202ENST00000411423 HIST1H4AP62805 103 aaKnown RBP8.66□□□□□ -1.02
SF3A1-202ENST00000411423 CSAG1Q6PB30 78 aa8.66□□□□□ -1.02
SF3A1-202ENST00000411423 FAM236AA0A1B0GUQ0 79 aa8.64□□□□□ -1.03
SF3A1-202ENST00000411423 FAM236BA0A1B0GV22 79 aa8.64□□□□□ -1.03
SF3A1-202ENST00000411423 SYNE2Q8WXH0 6885 aaKnown RBP8.63□□□□□ -1.03
SF3A1-202ENST00000411423 LOC101927531A0A1B0GV80 90 aa8.62□□□□□ -1.03
SF3A1-202ENST00000411423 MT1BP07438 61 aa8.6□□□□□ -1.03
SF3A1-202ENST00000411423 UQCRQO14949 82 aa8.58□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 123.9 ms