RNA–Protein interactions for RNA: ENST00000409809.5

COL6A3-206, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 8,916 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-206ENST00000409809 UTRNP46939 3433 aa7.08□□□□□ -1.28
COL6A3-206ENST00000409809 HTTP42858 3142 aa7.07□□□□□ -1.28
COL6A3-206ENST00000409809 KRTAP10-1P60331 282 aa7.07□□□□□ -1.28
COL6A3-206ENST00000409809 KRTAP21-3Q3LHN1 58 aa7.06□□□□□ -1.28
COL6A3-206ENST00000409809 PDZD2O15018 2839 aa7.05□□□□□ -1.28
COL6A3-206ENST00000409809 TACC2O95359 2948 aa7.03□□□□□ -1.28
COL6A3-206ENST00000409809 DCHS2Q6V1P9 2916 aa7.03□□□□□ -1.28
COL6A3-206ENST00000409809 NBEAQ8NFP9 2946 aa7.02□□□□□ -1.29
COL6A3-206ENST00000409809 TNRC18O15417 2968 aaPredicted RBP7□□□□□ -1.29
COL6A3-206ENST00000409809 KRTAP10-2P60368 255 aa6.97□□□□□ -1.29
COL6A3-206ENST00000409809 MXRA5Q9NR99 2828 aa6.97□□□□□ -1.29
COL6A3-206ENST00000409809 KRTAP13-2Q52LG2 175 aa6.96□□□□□ -1.3
COL6A3-206ENST00000409809 KRTAP7-1Q8IUC3 87 aa6.95□□□□□ -1.3
COL6A3-206ENST00000409809 DMXL2Q8TDJ6 3036 aa6.94□□□□□ -1.3
COL6A3-206ENST00000409809 SRRM2Q9UQ35 2752 aaKnown RBP6.93□□□□□ -1.3
COL6A3-206ENST00000409809 COL12A1Q99715 3063 aa6.92□□□□□ -1.3
COL6A3-206ENST00000409809 LAMA3Q16787 3333 aa6.89□□□□□ -1.31
COL6A3-206ENST00000409809 CRYBG3Q68DQ2 2970 aa6.87□□□□□ -1.31
COL6A3-206ENST00000409809 LAMA1P25391 3075 aa6.86□□□□□ -1.31
COL6A3-206ENST00000409809 ATMQ13315 3056 aa6.85□□□□□ -1.31
COL6A3-206ENST00000409809 HRNRQ86YZ3 2850 aaPredicted RBP6.81□□□□□ -1.32
COL6A3-206ENST00000409809 INE1O15225 51 aa6.81□□□□□ -1.32
COL6A3-206ENST00000409809 FBN2P35556 2912 aa6.8□□□□□ -1.32
COL6A3-206ENST00000409809 ADGRG4Q8IZF6 3080 aa6.8□□□□□ -1.32
COL6A3-206ENST00000409809 PRO2289Q9P1D8 64 aa6.8□□□□□ -1.32
COL6A3-206ENST00000409809 MKI67P46013 3256 aaKnown RBP6.8□□□□□ -1.32
COL6A3-206ENST00000409809 REV3LO60673 3130 aa6.78□□□□□ -1.32
COL6A3-206ENST00000409809 KRTAP10-8P60410 259 aa6.73□□□□□ -1.33
COL6A3-206ENST00000409809 XIRP2A4UGR9 3374 aa6.71□□□□□ -1.33
COL6A3-206ENST00000409809 BOD1L1Q8NFC6 3051 aa6.71□□□□□ -1.33
COL6A3-206ENST00000409809 FREM2Q5SZK8 3169 aa6.71□□□□□ -1.34
COL6A3-206ENST00000409809 PKD1L1Q8TDX9 2849 aa6.7□□□□□ -1.34
COL6A3-206ENST00000409809 KRTAP13-3Q3SY46 172 aa6.68□□□□□ -1.34
COL6A3-206ENST00000409809 KRTAP13-4Q3LI77 160 aa6.68□□□□□ -1.34
COL6A3-206ENST00000409809 TENM2Q9NT68 2774 aa6.67□□□□□ -1.34
COL6A3-206ENST00000409809 USP34Q70CQ2 3546 aa6.66□□□□□ -1.34
COL6A3-206ENST00000409809 TPRXLQ17RH7 258 aa6.65□□□□□ -1.35
COL6A3-206ENST00000409809 XP32Q5T750 250 aa6.64□□□□□ -1.35
COL6A3-206ENST00000409809 VWFP04275 2813 aa6.63□□□□□ -1.35
COL6A3-206ENST00000409809 CELSR1Q9NYQ6 3014 aa6.62□□□□□ -1.35
COL6A3-206ENST00000409809 BRCA2P51587 3418 aa6.61□□□□□ -1.35
COL6A3-206ENST00000409809 KRTAP1-4P0C5Y4 121 aa6.57□□□□□ -1.36
COL6A3-206ENST00000409809 DMXL1Q9Y485 3027 aa6.54□□□□□ -1.36
COL6A3-206ENST00000409809 UNC80Q8N2C7 3258 aa6.5□□□□□ -1.37
COL6A3-206ENST00000409809 COL6A3P12111 3177 aa6.49□□□□□ -1.37
COL6A3-206ENST00000409809 KRTAP12-2P59991 146 aa6.49□□□□□ -1.37
COL6A3-206ENST00000409809 A0A1B0GVY2 172 aa6.46□□□□□ -1.38
COL6A3-206ENST00000409809 KRTAP12-1P59990 96 aa6.44□□□□□ -1.38
COL6A3-206ENST00000409809 KRTAP15-1Q3LI76 137 aa6.44□□□□□ -1.38
COL6A3-206ENST00000409809 CELSR3Q9NYQ7 3312 aa6.44□□□□□ -1.38
COL6A3-206ENST00000409809 ZFHX3Q15911 3703 aa6.42□□□□□ -1.38
COL6A3-206ENST00000409809 CDH23Q9H251 3354 aa6.4□□□□□ -1.39
COL6A3-206ENST00000409809 EYSQ5T1H1 3165 aa6.37□□□□□ -1.39
COL6A3-206ENST00000409809 COL7A1Q02388 2944 aa6.35□□□□□ -1.39
COL6A3-206ENST00000409809 VCANP13611 3396 aa6.35□□□□□ -1.39
COL6A3-206ENST00000409809 CFAP47Q6ZTR5 3102 aa6.32□□□□□ -1.4
COL6A3-206ENST00000409809 KRTAP23-1A1A580 65 aa6.29□□□□□ -1.4
COL6A3-206ENST00000409809 FBN1P35555 2871 aaKnown RBP6.29□□□□□ -1.4
COL6A3-206ENST00000409809 MEGF8Q7Z7M0 2845 aa6.28□□□□□ -1.4
COL6A3-206ENST00000409809 KRTAP10-10P60014 251 aa6.26□□□□□ -1.41
COL6A3-206ENST00000409809 SZT2Q5T011 3432 aa6.22□□□□□ -1.41
COL6A3-206ENST00000409809 DNAH14Q0VDD8 3507 aa6.16□□□□□ -1.42
COL6A3-206ENST00000409809 FBN3Q75N90 2809 aa6.12□□□□□ -1.43
COL6A3-206ENST00000409809 KRTAP10-6P60371 365 aaPredicted RBP6.12□□□□□ -1.43
COL6A3-206ENST00000409809 SPTBN5Q9NRC6 3674 aaKnown RBP6.09□□□□□ -1.43
COL6A3-206ENST00000409809 SPEGQ15772 3267 aa6.08□□□□□ -1.44
COL6A3-206ENST00000409809 MYO15AQ9UKN7 3530 aa6.06□□□□□ -1.44
COL6A3-206ENST00000409809 KRTAP3-1Q9BYR8 98 aa6.05□□□□□ -1.44
COL6A3-206ENST00000409809 LOC400499M0QZD8 3231 aa6.03□□□□□ -1.44
COL6A3-206ENST00000409809 OTOGQ6ZRI0 2925 aa5.99□□□□□ -1.45
COL6A3-206ENST00000409809 NBPF19A0A087WUL8 3843 aa5.92□□□□□ -1.46
COL6A3-206ENST00000409809 DCHS1Q96JQ0 3298 aa5.87□□□□□ -1.47
COL6A3-206ENST00000409809 KRTAP10-12P60413 245 aa5.83□□□□□ -1.48
COL6A3-206ENST00000409809 KRTAP3-2Q9BYR7 98 aa5.81□□□□□ -1.48
COL6A3-206ENST00000409809 WDFY3Q8IZQ1 3526 aa5.81□□□□□ -1.48
COL6A3-206ENST00000409809 ZFHX4Q86UP3 3567 aa5.73□□□□□ -1.49
COL6A3-206ENST00000409809 KRTAP12-3P60328 96 aa5.71□□□□□ -1.49
COL6A3-206ENST00000409809 KRTAP3-3Q9BYR6 98 aa5.71□□□□□ -1.49
COL6A3-206ENST00000409809 ALMS1Q8TCU4 4167 aa5.69□□□□□ -1.5
COL6A3-206ENST00000409809 CRCT1Q9UGL9 99 aa5.67□□□□□ -1.5
COL6A3-206ENST00000409809 SPENQ96T58 3664 aaKnown RBP5.67□□□□□ -1.5
COL6A3-206ENST00000409809 TRRAPQ9Y4A5 3859 aa5.67□□□□□ -1.5
COL6A3-206ENST00000409809 LAMA5O15230 3695 aa5.61□□□□□ -1.51
COL6A3-206ENST00000409809 AKAP9Q99996 3911 aa5.59□□□□□ -1.51
COL6A3-206ENST00000409809 RELNP78509 3460 aa5.58□□□□□ -1.52
COL6A3-206ENST00000409809 DMDP11532 3685 aa5.54□□□□□ -1.52
COL6A3-206ENST00000409809 SMG1Q96Q15 3661 aaKnown RBP5.54□□□□□ -1.52
COL6A3-206ENST00000409809 KRTAP19-4Q3LI73 84 aa5.51□□□□□ -1.53
COL6A3-206ENST00000409809 LCE3AQ5TA76 89 aa5.42□□□□□ -1.54
COL6A3-206ENST00000409809 ASPMQ8IZT6 3477 aa5.41□□□□□ -1.54
COL6A3-206ENST00000409809 MT1HL1P0DM35 61 aa5.41□□□□□ -1.54
COL6A3-206ENST00000409809 VPS13CQ709C8 3753 aa5.38□□□□□ -1.55
COL6A3-206ENST00000409809 CSMD1Q96PZ7 3565 aa5.37□□□□□ -1.55
COL6A3-206ENST00000409809 KRTAP10-4P60372 401 aaPredicted RBP5.29□□□□□ -1.56
COL6A3-206ENST00000409809 MUC3AQ02505 3323 aa5.28□□□□□ -1.56
COL6A3-206ENST00000409809 KRTAP10-5P60370 271 aa5.27□□□□□ -1.57
COL6A3-206ENST00000409809 CUBNO60494 3623 aa5.21□□□□□ -1.58
COL6A3-206ENST00000409809 BSNQ9UPA5 3926 aa5.19□□□□□ -1.58
COL6A3-206ENST00000409809 DNAH3Q8TD57 4116 aa5.17□□□□□ -1.58
COL6A3-206ENST00000409809 SVEP1Q4LDE5 3571 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms