RNA–Protein interactions for RNA: ENST00000409694.6

SYNE1-210, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,634 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-210ENST00000409694 KRTAP10-10P60014 251 aa4.13□□□□□ -1.75
SYNE1-210ENST00000409694 NBEAL2Q6ZNJ1 2754 aa4.12□□□□□ -1.75
SYNE1-210ENST00000409694 HIVEP1P15822 2718 aa4.11□□□□□ -1.75
SYNE1-210ENST00000409694 TRIOO75962 3097 aa4.11□□□□□ -1.75
SYNE1-210ENST00000409694 A0A1B0GVY2 172 aa4.07□□□□□ -1.76
SYNE1-210ENST00000409694 FRYLO94915 3013 aa4.07□□□□□ -1.76
SYNE1-210ENST00000409694 BOD1L1Q8NFC6 3051 aa4.07□□□□□ -1.76
SYNE1-210ENST00000409694 LAMA3Q16787 3333 aa4.06□□□□□ -1.76
SYNE1-210ENST00000409694 WDFY4Q6ZS81 3184 aa4.05□□□□□ -1.76
SYNE1-210ENST00000409694 KRTAP13-4Q3LI77 160 aa4.04□□□□□ -1.76
SYNE1-210ENST00000409694 WDFY3Q8IZQ1 3526 aa4.03□□□□□ -1.76
SYNE1-210ENST00000409694 VCANP13611 3396 aa4.03□□□□□ -1.76
SYNE1-210ENST00000409694 LAMA1P25391 3075 aa4.03□□□□□ -1.76
SYNE1-210ENST00000409694 ASH1LQ9NR48 2969 aaKnown RBP4.02□□□□□ -1.77
SYNE1-210ENST00000409694 CHD9Q3L8U1 2897 aa4.01□□□□□ -1.77
SYNE1-210ENST00000409694 FRYQ5TBA9 3013 aa4.01□□□□□ -1.77
SYNE1-210ENST00000409694 TENM1Q9UKZ4 2725 aa4.01□□□□□ -1.77
SYNE1-210ENST00000409694 KRTAP1-4P0C5Y4 121 aa4.01□□□□□ -1.77
SYNE1-210ENST00000409694 INE1O15225 51 aa4.01□□□□□ -1.77
SYNE1-210ENST00000409694 KRTAP12-2P59991 146 aa4□□□□□ -1.77
SYNE1-210ENST00000409694 TENM3Q9P273 2699 aa4□□□□□ -1.77
SYNE1-210ENST00000409694 KALRNO60229 2985 aa3.98□□□□□ -1.77
SYNE1-210ENST00000409694 KRTAP13-3Q3SY46 172 aa3.98□□□□□ -1.77
SYNE1-210ENST00000409694 ASPMQ8IZT6 3477 aa3.97□□□□□ -1.77
SYNE1-210ENST00000409694 FREM2Q5SZK8 3169 aa3.97□□□□□ -1.77
SYNE1-210ENST00000409694 NF1P21359 2839 aa3.97□□□□□ -1.77
SYNE1-210ENST00000409694 PRUNE2Q8WUY3 3088 aa3.97□□□□□ -1.77
SYNE1-210ENST00000409694 SZT2Q5T011 3432 aa3.96□□□□□ -1.77
SYNE1-210ENST00000409694 CHD7Q9P2D1 2997 aa3.96□□□□□ -1.78
SYNE1-210ENST00000409694 TNRC18O15417 2968 aaPredicted RBP3.95□□□□□ -1.78
SYNE1-210ENST00000409694 COL6A3P12111 3177 aa3.95□□□□□ -1.78
SYNE1-210ENST00000409694 TENM4Q6N022 2769 aa3.95□□□□□ -1.78
SYNE1-210ENST00000409694 DMXL1Q9Y485 3027 aa3.94□□□□□ -1.78
SYNE1-210ENST00000409694 MYO15AQ9UKN7 3530 aa3.93□□□□□ -1.78
SYNE1-210ENST00000409694 RELNP78509 3460 aa3.93□□□□□ -1.78
SYNE1-210ENST00000409694 HTTP42858 3142 aa3.92□□□□□ -1.78
SYNE1-210ENST00000409694 KRTAP15-1Q3LI76 137 aa3.91□□□□□ -1.78
SYNE1-210ENST00000409694 TGP01266 2768 aa3.91□□□□□ -1.78
SYNE1-210ENST00000409694 TACC2O95359 2948 aa3.91□□□□□ -1.78
SYNE1-210ENST00000409694 DCHS1Q96JQ0 3298 aa3.91□□□□□ -1.78
SYNE1-210ENST00000409694 LAMA5O15230 3695 aa3.9□□□□□ -1.79
SYNE1-210ENST00000409694 SPENQ96T58 3664 aaKnown RBP3.89□□□□□ -1.79
SYNE1-210ENST00000409694 SPTBN5Q9NRC6 3674 aaKnown RBP3.89□□□□□ -1.79
SYNE1-210ENST00000409694 LRBAP50851 2863 aa3.89□□□□□ -1.79
SYNE1-210ENST00000409694 ZFHX3Q15911 3703 aa3.88□□□□□ -1.79
SYNE1-210ENST00000409694 DMXL2Q8TDJ6 3036 aa3.87□□□□□ -1.79
SYNE1-210ENST00000409694 ATMQ13315 3056 aa3.85□□□□□ -1.79
SYNE1-210ENST00000409694 SPEGQ15772 3267 aa3.84□□□□□ -1.79
SYNE1-210ENST00000409694 NBPF19A0A087WUL8 3843 aa3.84□□□□□ -1.79
SYNE1-210ENST00000409694 KRTAP12-1P59990 96 aa3.84□□□□□ -1.79
SYNE1-210ENST00000409694 ZZEF1O43149 2961 aa3.83□□□□□ -1.8
SYNE1-210ENST00000409694 COL12A1Q99715 3063 aa3.83□□□□□ -1.8
SYNE1-210ENST00000409694 CELSR2Q9HCU4 2923 aa3.83□□□□□ -1.8
SYNE1-210ENST00000409694 MXRA5Q9NR99 2828 aa3.83□□□□□ -1.8
SYNE1-210ENST00000409694 DMDP11532 3685 aa3.82□□□□□ -1.8
SYNE1-210ENST00000409694 CFAP47Q6ZTR5 3102 aa3.81□□□□□ -1.8
SYNE1-210ENST00000409694 ADGRG4Q8IZF6 3080 aa3.78□□□□□ -1.8
SYNE1-210ENST00000409694 NBEAQ8NFP9 2946 aa3.78□□□□□ -1.8
SYNE1-210ENST00000409694 EYSQ5T1H1 3165 aa3.78□□□□□ -1.81
SYNE1-210ENST00000409694 ZANQ9Y493 2812 aa3.76□□□□□ -1.81
SYNE1-210ENST00000409694 CRYBG3Q68DQ2 2970 aa3.76□□□□□ -1.81
SYNE1-210ENST00000409694 DCHS2Q6V1P9 2916 aa3.75□□□□□ -1.81
SYNE1-210ENST00000409694 PDZD2O15018 2839 aa3.75□□□□□ -1.81
SYNE1-210ENST00000409694 AKAP9Q99996 3911 aa3.72□□□□□ -1.81
SYNE1-210ENST00000409694 LOC400499M0QZD8 3231 aa3.71□□□□□ -1.81
SYNE1-210ENST00000409694 ZFHX4Q86UP3 3567 aa3.7□□□□□ -1.82
SYNE1-210ENST00000409694 SRRM2Q9UQ35 2752 aaKnown RBP3.67□□□□□ -1.82
SYNE1-210ENST00000409694 KRTAP10-12P60413 245 aa3.67□□□□□ -1.82
SYNE1-210ENST00000409694 TENM2Q9NT68 2774 aa3.66□□□□□ -1.82
SYNE1-210ENST00000409694 CSMD1Q96PZ7 3565 aa3.66□□□□□ -1.82
SYNE1-210ENST00000409694 KRTAP23-1A1A580 65 aa3.65□□□□□ -1.83
SYNE1-210ENST00000409694 CELSR1Q9NYQ6 3014 aa3.65□□□□□ -1.83
SYNE1-210ENST00000409694 PKD1L1Q8TDX9 2849 aa3.64□□□□□ -1.83
SYNE1-210ENST00000409694 VPS13CQ709C8 3753 aa3.63□□□□□ -1.83
SYNE1-210ENST00000409694 SMG1Q96Q15 3661 aaKnown RBP3.63□□□□□ -1.83
SYNE1-210ENST00000409694 MUC3AQ02505 3323 aa3.61□□□□□ -1.83
SYNE1-210ENST00000409694 HRNRQ86YZ3 2850 aaPredicted RBP3.59□□□□□ -1.84
SYNE1-210ENST00000409694 VWFP04275 2813 aa3.58□□□□□ -1.84
SYNE1-210ENST00000409694 FBN2P35556 2912 aa3.58□□□□□ -1.84
SYNE1-210ENST00000409694 CSMD2Q7Z408 3487 aa3.56□□□□□ -1.84
SYNE1-210ENST00000409694 KRTAP10-6P60371 365 aaPredicted RBP3.56□□□□□ -1.84
SYNE1-210ENST00000409694 KRTAP3-1Q9BYR8 98 aa3.56□□□□□ -1.84
SYNE1-210ENST00000409694 CRCT1Q9UGL9 99 aa3.55□□□□□ -1.84
SYNE1-210ENST00000409694 KRTAP12-3P60328 96 aa3.52□□□□□ -1.85
SYNE1-210ENST00000409694 BSNQ9UPA5 3926 aa3.51□□□□□ -1.85
SYNE1-210ENST00000409694 COL7A1Q02388 2944 aa3.47□□□□□ -1.85
SYNE1-210ENST00000409694 SVEP1Q4LDE5 3571 aa3.47□□□□□ -1.85
SYNE1-210ENST00000409694 CUBNO60494 3623 aa3.44□□□□□ -1.86
SYNE1-210ENST00000409694 TRRAPQ9Y4A5 3859 aa3.41□□□□□ -1.86
SYNE1-210ENST00000409694 KRTAP10-5P60370 271 aa3.4□□□□□ -1.87
SYNE1-210ENST00000409694 LCE3AQ5TA76 89 aa3.38□□□□□ -1.87
SYNE1-210ENST00000409694 KRTAP3-2Q9BYR7 98 aa3.37□□□□□ -1.87
SYNE1-210ENST00000409694 FBN3Q75N90 2809 aa3.37□□□□□ -1.87
SYNE1-210ENST00000409694 MEGF8Q7Z7M0 2845 aa3.36□□□□□ -1.87
SYNE1-210ENST00000409694 KRTAP3-3Q9BYR6 98 aa3.35□□□□□ -1.87
SYNE1-210ENST00000409694 FBN1P35555 2871 aaKnown RBP3.34□□□□□ -1.88
SYNE1-210ENST00000409694 KRTAP8-1Q8IUC2 63 aa3.33□□□□□ -1.88
SYNE1-210ENST00000409694 ALMS1Q8TCU4 4167 aa3.3□□□□□ -1.88
SYNE1-210ENST00000409694 OTOGQ6ZRI0 2925 aa3.28□□□□□ -1.88
SYNE1-210ENST00000409694 CMYA5Q8N3K9 4069 aa3.26□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms