RNA–Protein interactions for RNA: ENST00000409672.5

SCN9A-203, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS P2 TSL 5 BASIC

Gene SCN9A, Length 9,768 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-203ENST00000409672 CYSTM1Q9H1C7 97 aa4.85□□□□□ -1.63
SCN9A-203ENST00000409672 SPRR1BP22528 89 aa4.85□□□□□ -1.63
SCN9A-203ENST00000409672 SPRR1AP35321 89 aa4.85□□□□□ -1.63
SCN9A-203ENST00000409672 CSMD1Q96PZ7 3565 aa4.84□□□□□ -1.63
SCN9A-203ENST00000409672 CHD9Q3L8U1 2897 aa4.84□□□□□ -1.63
SCN9A-203ENST00000409672 ZNF292O60281 2723 aa4.84□□□□□ -1.63
SCN9A-203ENST00000409672 TACC2O95359 2948 aa4.84□□□□□ -1.64
SCN9A-203ENST00000409672 Q5VV11 94 aa4.84□□□□□ -1.64
SCN9A-203ENST00000409672 NOTCH1P46531 2555 aa4.83□□□□□ -1.64
SCN9A-203ENST00000409672 KRTAP10-8P60410 259 aa4.81□□□□□ -1.64
SCN9A-203ENST00000409672 KRTAP11-1Q8IUC1 163 aa4.81□□□□□ -1.64
SCN9A-203ENST00000409672 KMT2BQ9UMN6 2715 aaPredicted RBP4.8□□□□□ -1.64
SCN9A-203ENST00000409672 NSD1Q96L73 2696 aaPredicted RBP4.8□□□□□ -1.64
SCN9A-203ENST00000409672 C10orf95Q9H7T3 257 aa4.79□□□□□ -1.64
SCN9A-203ENST00000409672 DMXL1Q9Y485 3027 aa4.77□□□□□ -1.65
SCN9A-203ENST00000409672 UTP20O75691 2785 aaKnown RBP4.75□□□□□ -1.65
SCN9A-203ENST00000409672 SPENQ96T58 3664 aaKnown RBP4.75□□□□□ -1.65
SCN9A-203ENST00000409672 HIVEP1P15822 2718 aa4.73□□□□□ -1.65
SCN9A-203ENST00000409672 DMDP11532 3685 aa4.72□□□□□ -1.65
SCN9A-203ENST00000409672 TNP1P09430 55 aa4.71□□□□□ -1.66
SCN9A-203ENST00000409672 Q5XG85 94 aa4.71□□□□□ -1.66
SCN9A-203ENST00000409672 IGSF10Q6WRI0 2623 aa4.7□□□□□ -1.66
SCN9A-203ENST00000409672 CUBNO60494 3623 aa4.7□□□□□ -1.66
SCN9A-203ENST00000409672 KRTAP10-10P60014 251 aa4.69□□□□□ -1.66
SCN9A-203ENST00000409672 CELSR1Q9NYQ6 3014 aa4.69□□□□□ -1.66
SCN9A-203ENST00000409672 KRTAP13-2Q52LG2 175 aa4.68□□□□□ -1.66
SCN9A-203ENST00000409672 UBR5O95071 2799 aaPredicted RBP4.67□□□□□ -1.66
SCN9A-203ENST00000409672 NBEAQ8NFP9 2946 aa4.67□□□□□ -1.66
SCN9A-203ENST00000409672 SMG1Q96Q15 3661 aaKnown RBP4.66□□□□□ -1.66
SCN9A-203ENST00000409672 CELSR2Q9HCU4 2923 aa4.65□□□□□ -1.67
SCN9A-203ENST00000409672 KRTAP4-16G5E9R7 235 aaPredicted RBP4.63□□□□□ -1.67
SCN9A-203ENST00000409672 Q6ZRN7 208 aaPredicted RBP4.63□□□□□ -1.67
SCN9A-203ENST00000409672 ZFHX3Q15911 3703 aa4.63□□□□□ -1.67
SCN9A-203ENST00000409672 ITPR1Q14643 2758 aa4.62□□□□□ -1.67
SCN9A-203ENST00000409672 NDUFAF8A1L188 74 aa4.61□□□□□ -1.67
SCN9A-203ENST00000409672 KRTAP16-1A8MUX0 517 aa4.61□□□□□ -1.67
SCN9A-203ENST00000409672 SVEP1Q4LDE5 3571 aa4.57□□□□□ -1.68
SCN9A-203ENST00000409672 KRTAP25-1Q3LHN0 102 aa4.57□□□□□ -1.68
SCN9A-203ENST00000409672 KRTAP7-1Q8IUC3 87 aa4.57□□□□□ -1.68
SCN9A-203ENST00000409672 KRTAP29-1A8MX34 341 aaPredicted RBP4.56□□□□□ -1.68
SCN9A-203ENST00000409672 TENM1Q9UKZ4 2725 aa4.55□□□□□ -1.68
SCN9A-203ENST00000409672 FLNCQ14315 2725 aa4.55□□□□□ -1.68
SCN9A-203ENST00000409672 P0C880 135 aa4.54□□□□□ -1.68
SCN9A-203ENST00000409672 CSMD2Q7Z408 3487 aa4.53□□□□□ -1.68
SCN9A-203ENST00000409672 RPS29P62273 56 aaKnown RBP4.53□□□□□ -1.68
SCN9A-203ENST00000409672 DCHS2Q6V1P9 2916 aa4.52□□□□□ -1.69
SCN9A-203ENST00000409672 XP32Q5T750 250 aa4.52□□□□□ -1.69
SCN9A-203ENST00000409672 ASB16-AS1Q495Z4 193 aa4.49□□□□□ -1.69
SCN9A-203ENST00000409672 MUC3AQ02505 3323 aa4.49□□□□□ -1.69
SCN9A-203ENST00000409672 PRO2289Q9P1D8 64 aa4.49□□□□□ -1.69
SCN9A-203ENST00000409672 NF1P21359 2839 aa4.45□□□□□ -1.7
SCN9A-203ENST00000409672 TENM4Q6N022 2769 aa4.45□□□□□ -1.7
SCN9A-203ENST00000409672 FBN2P35556 2912 aa4.44□□□□□ -1.7
SCN9A-203ENST00000409672 NIPBLQ6KC79 2804 aaeCLIP4.44□□□□□ -1.7
SCN9A-203ENST00000409672 PKD1L1Q8TDX9 2849 aa4.44□□□□□ -1.7
SCN9A-203ENST00000409672 VWFP04275 2813 aa4.43□□□□□ -1.7
SCN9A-203ENST00000409672 KRTAP13-1Q8IUC0 172 aa4.43□□□□□ -1.7
SCN9A-203ENST00000409672 KRTAP21-3Q3LHN1 58 aa4.41□□□□□ -1.7
SCN9A-203ENST00000409672 ZANQ9Y493 2812 aa4.39□□□□□ -1.71
SCN9A-203ENST00000409672 TENM2Q9NT68 2774 aa4.38□□□□□ -1.71
SCN9A-203ENST00000409672 A6NN06 94 aa4.35□□□□□ -1.71
SCN9A-203ENST00000409672 TPRXLQ17RH7 258 aa4.35□□□□□ -1.71
SCN9A-203ENST00000409672 KRTAP1-4P0C5Y4 121 aa4.34□□□□□ -1.71
SCN9A-203ENST00000409672 CRCT1Q9UGL9 99 aa4.33□□□□□ -1.72
SCN9A-203ENST00000409672 VPS13CQ709C8 3753 aa4.3□□□□□ -1.72
SCN9A-203ENST00000409672 CSMD3Q7Z407 3707 aa4.3□□□□□ -1.72
SCN9A-203ENST00000409672 H0YAA0 97 aa4.3□□□□□ -1.72
SCN9A-203ENST00000409672 PDZD2O15018 2839 aa4.28□□□□□ -1.72
SCN9A-203ENST00000409672 KRTAP13-3Q3SY46 172 aa4.27□□□□□ -1.73
SCN9A-203ENST00000409672 PP632Q6XCG6 107 aa4.27□□□□□ -1.73
SCN9A-203ENST00000409672 TENM3Q9P273 2699 aa4.25□□□□□ -1.73
SCN9A-203ENST00000409672 TGP01266 2768 aa4.25□□□□□ -1.73
SCN9A-203ENST00000409672 HRNRQ86YZ3 2850 aaPredicted RBP4.24□□□□□ -1.73
SCN9A-203ENST00000409672 BSNQ9UPA5 3926 aa4.23□□□□□ -1.73
SCN9A-203ENST00000409672 MXRA5Q9NR99 2828 aa4.22□□□□□ -1.73
SCN9A-203ENST00000409672 TRRAPQ9Y4A5 3859 aa4.21□□□□□ -1.73
SCN9A-203ENST00000409672 KRTAP12-2P59991 146 aa4.2□□□□□ -1.74
SCN9A-203ENST00000409672 MEGF8Q7Z7M0 2845 aa4.16□□□□□ -1.74
SCN9A-203ENST00000409672 KRTAP15-1Q3LI76 137 aa4.13□□□□□ -1.75
SCN9A-203ENST00000409672 COL7A1Q02388 2944 aa4.1□□□□□ -1.75
SCN9A-203ENST00000409672 SRRM2Q9UQ35 2752 aaKnown RBP4.06□□□□□ -1.76
SCN9A-203ENST00000409672 FBN1P35555 2871 aaKnown RBP4.03□□□□□ -1.77
SCN9A-203ENST00000409672 AKAP9Q99996 3911 aa4.02□□□□□ -1.77
SCN9A-203ENST00000409672 ANK3Q12955 4377 aaKnown RBP4□□□□□ -1.77
SCN9A-203ENST00000409672 KRTAP13-4Q3LI77 160 aa3.98□□□□□ -1.77
SCN9A-203ENST00000409672 ZNF469Q96JG9 3925 aaPredicted RBP3.97□□□□□ -1.77
SCN9A-203ENST00000409672 KRTAP12-1P59990 96 aa3.96□□□□□ -1.78
SCN9A-203ENST00000409672 LORP23490 312 aaPredicted RBP3.94□□□□□ -1.78
SCN9A-203ENST00000409672 KRTAP4-5Q9BYR2 181 aa3.94□□□□□ -1.78
SCN9A-203ENST00000409672 FBN3Q75N90 2809 aa3.92□□□□□ -1.78
SCN9A-203ENST00000409672 HUWE1Q7Z6Z7 4374 aaKnown RBP3.91□□□□□ -1.78
SCN9A-203ENST00000409672 OTOGQ6ZRI0 2925 aa3.88□□□□□ -1.79
SCN9A-203ENST00000409672 KRTAP10-12P60413 245 aa3.85□□□□□ -1.79
SCN9A-203ENST00000409672 KRTAP3-1Q9BYR8 98 aa3.83□□□□□ -1.8
SCN9A-203ENST00000409672 FRAS1Q86XX4 4008 aa3.77□□□□□ -1.81
SCN9A-203ENST00000409672 KRTAP10-5P60370 271 aa3.75□□□□□ -1.81
SCN9A-203ENST00000409672 KRTAP8-1Q8IUC2 63 aa3.73□□□□□ -1.81
SCN9A-203ENST00000409672 MT1HL1P0DM35 61 aa3.72□□□□□ -1.81
SCN9A-203ENST00000409672 KRTAP10-6P60371 365 aaPredicted RBP3.69□□□□□ -1.82
SCN9A-203ENST00000409672 LCE3AQ5TA76 89 aa3.69□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms