RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 XIRP2A4UGR9 3374 aa3.05□□□□□ -1.92
SCN1A-203ENST00000409050 MYO15AQ9UKN7 3530 aa3.05□□□□□ -1.92
SCN1A-203ENST00000409050 DNAH14Q0VDD8 3507 aa3.05□□□□□ -1.92
SCN1A-203ENST00000409050 APCP25054 2843 aa3.04□□□□□ -1.92
SCN1A-203ENST00000409050 KALRNO60229 2985 aa3.03□□□□□ -1.92
SCN1A-203ENST00000409050 INE1O15225 51 aa3.03□□□□□ -1.92
SCN1A-203ENST00000409050 UNC80Q8N2C7 3258 aa3.02□□□□□ -1.93
SCN1A-203ENST00000409050 SZT2Q5T011 3432 aa3.02□□□□□ -1.93
SCN1A-203ENST00000409050 FREM2Q5SZK8 3169 aa3.01□□□□□ -1.93
SCN1A-203ENST00000409050 GCN1Q92616 2671 aaKnown RBP3.01□□□□□ -1.93
SCN1A-203ENST00000409050 TRIOO75962 3097 aa3.01□□□□□ -1.93
SCN1A-203ENST00000409050 ZNF292O60281 2723 aa3□□□□□ -1.93
SCN1A-203ENST00000409050 VPS13AQ96RL7 3174 aa2.99□□□□□ -1.93
SCN1A-203ENST00000409050 FRYLO94915 3013 aa2.99□□□□□ -1.93
SCN1A-203ENST00000409050 A0A1B0GVY2 172 aa2.99□□□□□ -1.93
SCN1A-203ENST00000409050 KRTAP12-1P59990 96 aa2.99□□□□□ -1.93
SCN1A-203ENST00000409050 ZZEF1O43149 2961 aa2.98□□□□□ -1.93
SCN1A-203ENST00000409050 DMDP11532 3685 aa2.98□□□□□ -1.93
SCN1A-203ENST00000409050 CFAP47Q6ZTR5 3102 aa2.98□□□□□ -1.93
SCN1A-203ENST00000409050 KRTAP23-1A1A580 65 aa2.97□□□□□ -1.93
SCN1A-203ENST00000409050 KRTAP12-2P59991 146 aa2.97□□□□□ -1.93
SCN1A-203ENST00000409050 ITPR2Q14571 2701 aa2.96□□□□□ -1.94
SCN1A-203ENST00000409050 UBR5O95071 2799 aaPredicted RBP2.96□□□□□ -1.94
SCN1A-203ENST00000409050 NF1P21359 2839 aa2.95□□□□□ -1.94
SCN1A-203ENST00000409050 DMXL2Q8TDJ6 3036 aa2.95□□□□□ -1.94
SCN1A-203ENST00000409050 VCANP13611 3396 aa2.95□□□□□ -1.94
SCN1A-203ENST00000409050 LAMA1P25391 3075 aa2.93□□□□□ -1.94
SCN1A-203ENST00000409050 ADGRG4Q8IZF6 3080 aa2.93□□□□□ -1.94
SCN1A-203ENST00000409050 UTP20O75691 2785 aaKnown RBP2.92□□□□□ -1.94
SCN1A-203ENST00000409050 NBEAL2Q6ZNJ1 2754 aa2.91□□□□□ -1.94
SCN1A-203ENST00000409050 PRUNE2Q8WUY3 3088 aa2.9□□□□□ -1.94
SCN1A-203ENST00000409050 LRBAP50851 2863 aa2.9□□□□□ -1.94
SCN1A-203ENST00000409050 COL6A3P12111 3177 aa2.9□□□□□ -1.95
SCN1A-203ENST00000409050 MKI67P46013 3256 aaKnown RBP2.9□□□□□ -1.95
SCN1A-203ENST00000409050 REV3LO60673 3130 aa2.89□□□□□ -1.95
SCN1A-203ENST00000409050 KRTAP15-1Q3LI76 137 aa2.88□□□□□ -1.95
SCN1A-203ENST00000409050 SPTBN5Q9NRC6 3674 aaKnown RBP2.88□□□□□ -1.95
SCN1A-203ENST00000409050 KRTAP3-1Q9BYR8 98 aa2.88□□□□□ -1.95
SCN1A-203ENST00000409050 HIVEP1P15822 2718 aa2.88□□□□□ -1.95
SCN1A-203ENST00000409050 MXRA5Q9NR99 2828 aa2.87□□□□□ -1.95
SCN1A-203ENST00000409050 ZFHX4Q86UP3 3567 aa2.87□□□□□ -1.95
SCN1A-203ENST00000409050 KRTAP10-6P60371 365 aaPredicted RBP2.87□□□□□ -1.95
SCN1A-203ENST00000409050 TENM4Q6N022 2769 aa2.86□□□□□ -1.95
SCN1A-203ENST00000409050 ATMQ13315 3056 aa2.86□□□□□ -1.95
SCN1A-203ENST00000409050 DMXL1Q9Y485 3027 aa2.85□□□□□ -1.95
SCN1A-203ENST00000409050 NIPBLQ6KC79 2804 aaeCLIP2.84□□□□□ -1.95
SCN1A-203ENST00000409050 HRNRQ86YZ3 2850 aaPredicted RBP2.84□□□□□ -1.96
SCN1A-203ENST00000409050 WDFY4Q6ZS81 3184 aa2.84□□□□□ -1.96
SCN1A-203ENST00000409050 TENM3Q9P273 2699 aa2.83□□□□□ -1.96
SCN1A-203ENST00000409050 ASH1LQ9NR48 2969 aaKnown RBP2.83□□□□□ -1.96
SCN1A-203ENST00000409050 ZANQ9Y493 2812 aa2.83□□□□□ -1.96
SCN1A-203ENST00000409050 SPENQ96T58 3664 aaKnown RBP2.83□□□□□ -1.96
SCN1A-203ENST00000409050 FLNCQ14315 2725 aa2.82□□□□□ -1.96
SCN1A-203ENST00000409050 ASPMQ8IZT6 3477 aa2.81□□□□□ -1.96
SCN1A-203ENST00000409050 CRYBG3Q68DQ2 2970 aa2.81□□□□□ -1.96
SCN1A-203ENST00000409050 DCHS2Q6V1P9 2916 aa2.8□□□□□ -1.96
SCN1A-203ENST00000409050 OTOGQ6ZRI0 2925 aa2.8□□□□□ -1.96
SCN1A-203ENST00000409050 CELSR2Q9HCU4 2923 aa2.79□□□□□ -1.96
SCN1A-203ENST00000409050 SPEGQ15772 3267 aa2.76□□□□□ -1.97
SCN1A-203ENST00000409050 CSMD2Q7Z408 3487 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 BOD1L1Q8NFC6 3051 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 RELNP78509 3460 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 KRTAP10-12P60413 245 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 KRTAP3-2Q9BYR7 98 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 LOC400499M0QZD8 3231 aa2.75□□□□□ -1.97
SCN1A-203ENST00000409050 SRRM2Q9UQ35 2752 aaKnown RBP2.73□□□□□ -1.97
SCN1A-203ENST00000409050 COL12A1Q99715 3063 aa2.72□□□□□ -1.97
SCN1A-203ENST00000409050 KRTAP19-4Q3LI73 84 aa2.71□□□□□ -1.98
SCN1A-203ENST00000409050 CSMD1Q96PZ7 3565 aa2.71□□□□□ -1.98
SCN1A-203ENST00000409050 FBN2P35556 2912 aa2.71□□□□□ -1.98
SCN1A-203ENST00000409050 KRTAP3-3Q9BYR6 98 aa2.7□□□□□ -1.98
SCN1A-203ENST00000409050 TENM2Q9NT68 2774 aa2.7□□□□□ -1.98
SCN1A-203ENST00000409050 TGP01266 2768 aa2.68□□□□□ -1.98
SCN1A-203ENST00000409050 KRTAP12-3P60328 96 aa2.68□□□□□ -1.98
SCN1A-203ENST00000409050 MT1HL1P0DM35 61 aa2.68□□□□□ -1.98
SCN1A-203ENST00000409050 CELSR3Q9NYQ7 3312 aa2.68□□□□□ -1.98
SCN1A-203ENST00000409050 TENM1Q9UKZ4 2725 aa2.68□□□□□ -1.98
SCN1A-203ENST00000409050 DCHS1Q96JQ0 3298 aa2.67□□□□□ -1.98
SCN1A-203ENST00000409050 VWFP04275 2813 aa2.67□□□□□ -1.98
SCN1A-203ENST00000409050 SVEP1Q4LDE5 3571 aa2.67□□□□□ -1.98
SCN1A-203ENST00000409050 PDZD2O15018 2839 aa2.66□□□□□ -1.98
SCN1A-203ENST00000409050 CELSR1Q9NYQ6 3014 aa2.64□□□□□ -1.99
SCN1A-203ENST00000409050 LAMA5O15230 3695 aa2.63□□□□□ -1.99
SCN1A-203ENST00000409050 PKD1L1Q8TDX9 2849 aa2.62□□□□□ -1.99
SCN1A-203ENST00000409050 KRTAP10-4P60372 401 aaPredicted RBP2.61□□□□□ -1.99
SCN1A-203ENST00000409050 MEGF8Q7Z7M0 2845 aa2.61□□□□□ -1.99
SCN1A-203ENST00000409050 SMG1Q96Q15 3661 aaKnown RBP2.59□□□□□ -1.99
SCN1A-203ENST00000409050 NBPF19A0A087WUL8 3843 aa2.58□□□□□ -2
SCN1A-203ENST00000409050 LCE3AQ5TA76 89 aa2.56□□□□□ -2
SCN1A-203ENST00000409050 HUWE1Q7Z6Z7 4374 aaKnown RBP2.55□□□□□ -2
SCN1A-203ENST00000409050 CRCT1Q9UGL9 99 aa2.53□□□□□ -2.01
SCN1A-203ENST00000409050 COL7A1Q02388 2944 aa2.51□□□□□ -2.01
SCN1A-203ENST00000409050 FBN3Q75N90 2809 aa2.51□□□□□ -2.01
SCN1A-203ENST00000409050 FBN1P35555 2871 aaKnown RBP2.48□□□□□ -2.01
SCN1A-203ENST00000409050 KRTAP8-1Q8IUC2 63 aa2.47□□□□□ -2.01
SCN1A-203ENST00000409050 KRTAP4-5Q9BYR2 181 aa2.47□□□□□ -2.01
SCN1A-203ENST00000409050 VPS13CQ709C8 3753 aa2.46□□□□□ -2.01
SCN1A-203ENST00000409050 SPRR2GQ9BYE4 73 aa2.46□□□□□ -2.02
SCN1A-203ENST00000409050 CUBNO60494 3623 aa2.44□□□□□ -2.02
SCN1A-203ENST00000409050 DNAH2Q9P225 4427 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 94.5 ms