RNA–Protein interactions for RNA: ENST00000404008.6

USP42-202, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 2

Gene USP42, Length 1,380 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-202ENST00000404008 A0A1B0GVX0 72 aa15.87■□□□□ 0.13
USP42-202ENST00000404008 LINC00313P59037 77 aa15.85■□□□□ 0.13
USP42-202ENST00000404008 A8MWP4 228 aa15.84■□□□□ 0.13
USP42-202ENST00000404008 RNF213Q63HN8 5207 aa15.83■□□□□ 0.13
USP42-202ENST00000404008 SEC61BP60468 96 aaKnown RBP15.83■□□□□ 0.12
USP42-202ENST00000404008 NDUFB1O75438 58 aa15.82■□□□□ 0.12
USP42-202ENST00000404008 NOTCH2NLQ7Z3S9 236 aa15.82■□□□□ 0.12
USP42-202ENST00000404008 RPL37P61927 97 aaKnown RBP15.81■□□□□ 0.12
USP42-202ENST00000404008 UBL5Q9BZL1 73 aa15.81■□□□□ 0.12
USP42-202ENST00000404008 IGKV3D-7A0A0C4DH55 119 aa15.79■□□□□ 0.12
USP42-202ENST00000404008 C8orf87E5RJ46 101 aa15.78■□□□□ 0.12
USP42-202ENST00000404008 BPY2O14599 106 aa15.78■□□□□ 0.12
USP42-202ENST00000404008 KRTAP16-1A8MUX0 517 aa15.75■□□□□ 0.11
USP42-202ENST00000404008 Q75L30 129 aa15.75■□□□□ 0.11
USP42-202ENST00000404008 PRR15Q8IV56 129 aa15.74■□□□□ 0.11
USP42-202ENST00000404008 C20orf166-AS1Q96NR2 134 aa15.74■□□□□ 0.11
USP42-202ENST00000404008 ACYP1P07311 99 aa15.71■□□□□ 0.11
USP42-202ENST00000404008 MUC2Q02817 5179 aa15.7■□□□□ 0.1
USP42-202ENST00000404008 FAM240AA0A1B0GVK7 77 aa15.7■□□□□ 0.1
USP42-202ENST00000404008 A8MUU9 505 aa15.7■□□□□ 0.1
USP42-202ENST00000404008 K7EQZ3 153 aa15.69■□□□□ 0.1
USP42-202ENST00000404008 PCOTHQ58A44 107 aa15.69■□□□□ 0.1
USP42-202ENST00000404008 C8orf17Q9NRJ1 99 aa15.67■□□□□ 0.1
USP42-202ENST00000404008 Q8N9L7 120 aa15.61■□□□□ 0.09
USP42-202ENST00000404008 MMP24-AS1A0A0U1RRL7 71 aa15.59■□□□□ 0.09
USP42-202ENST00000404008 ATP11AUNQ6ZP68 121 aa15.58■□□□□ 0.08
USP42-202ENST00000404008 KRTAP4-1Q9BYQ7 146 aa15.58■□□□□ 0.08
USP42-202ENST00000404008 CXCL6P80162 114 aa15.55■□□□□ 0.08
USP42-202ENST00000404008 Q8N9P0 234 aaPredicted RBP15.5■□□□□ 0.07
USP42-202ENST00000404008 TMEM254Q8TBM7 123 aa15.49■□□□□ 0.07
USP42-202ENST00000404008 hDV103S1A0JD37 113 aa15.48■□□□□ 0.07
USP42-202ENST00000404008 J3QR89 54 aa15.48■□□□□ 0.07
USP42-202ENST00000404008 MRPL34Q9BQ48 92 aaKnown RBP15.46■□□□□ 0.07
USP42-202ENST00000404008 ATP5EP2Q5VTU8 51 aa15.41■□□□□ 0.06
USP42-202ENST00000404008 CASC2Q6XLA1 102 aa15.4■□□□□ 0.06
USP42-202ENST00000404008 WFDC13Q8IUB5 93 aa15.4■□□□□ 0.06
USP42-202ENST00000404008 HCG22E2RYF7 251 aa15.36■□□□□ 0.05
USP42-202ENST00000404008 LINC00643Q86TS7 51 aa15.36■□□□□ 0.05
USP42-202ENST00000404008 ZCCHC13Q8WW36 166 aaKnown RBP15.34■□□□□ 0.05
USP42-202ENST00000404008 NDUFS5O43920 106 aa15.29■□□□□ 0.04
USP42-202ENST00000404008 A0A0U1RQV1 116 aa15.27■□□□□ 0.04
USP42-202ENST00000404008 K7ERU9 68 aa15.24■□□□□ 0.03
USP42-202ENST00000404008 HIST1H4AP62805 103 aaKnown RBP15.21■□□□□ 0.02
USP42-202ENST00000404008 FAT4Q6V0I7 4981 aa15.18■□□□□ 0.02
USP42-202ENST00000404008 KRTAP19-2Q3LHN2 52 aa15.12■□□□□ 0.01
USP42-202ENST00000404008 Q5W150 140 aa15.1■□□□□ 0.01
USP42-202ENST00000404008 A0A087WVE0 104 aa15.09■□□□□ 0.01
USP42-202ENST00000404008 SPINK7P58062 85 aa15.06■□□□□ 0
USP42-202ENST00000404008 LCE2CQ5TA81 110 aa15.03■□□□□ -0
USP42-202ENST00000404008 TP53AIP1Q9HCN2 124 aa15.03■□□□□ -0
USP42-202ENST00000404008 HRES1P13985 223 aa14.99□□□□□ -0.01
USP42-202ENST00000404008 COX6B2Q6YFQ2 88 aa14.93□□□□□ -0.02
USP42-202ENST00000404008 MPLKIPQ8TAP9 179 aa14.93□□□□□ -0.02
USP42-202ENST00000404008 MT-ATP8P03928 68 aa14.91□□□□□ -0.02
USP42-202ENST00000404008 LCE2AQ5TA79 106 aaPredicted RBP14.9□□□□□ -0.02
USP42-202ENST00000404008 IGKV2D-30A0A075B6S6 120 aa14.88□□□□□ -0.03
USP42-202ENST00000404008 IGKV2-30P06310 120 aa14.88□□□□□ -0.03
USP42-202ENST00000404008 C7orf65Q6ZTY9 151 aa14.87□□□□□ -0.03
USP42-202ENST00000404008 IMUPQ9GZP8 106 aa14.87□□□□□ -0.03
USP42-202ENST00000404008 RBM12B-AS1Q9P1G2 102 aa14.85□□□□□ -0.03
USP42-202ENST00000404008 UQCRQO14949 82 aa14.8□□□□□ -0.04
USP42-202ENST00000404008 TRAV22A0A0B4J277 110 aa14.79□□□□□ -0.04
USP42-202ENST00000404008 MT1HP80294 61 aa14.79□□□□□ -0.04
USP42-202ENST00000404008 FLGP20930 4061 aaPredicted RBP14.78□□□□□ -0.04
USP42-202ENST00000404008 FAM236DA0A1B0GTK5 79 aa14.76□□□□□ -0.05
USP42-202ENST00000404008 FAM236CP0DP71 79 aa14.76□□□□□ -0.05
USP42-202ENST00000404008 OCR1Q9BZK8 76 aa14.74□□□□□ -0.05
USP42-202ENST00000404008 SCGB1A1P11684 91 aa14.68□□□□□ -0.06
USP42-202ENST00000404008 H0Y9P7 68 aa14.67□□□□□ -0.06
USP42-202ENST00000404008 ATOX1O00244 68 aa14.64□□□□□ -0.07
USP42-202ENST00000404008 LOC101927531A0A1B0GV80 90 aa14.62□□□□□ -0.07
USP42-202ENST00000404008 CYP4F30PQ9H0H9 118 aa14.61□□□□□ -0.07
USP42-202ENST00000404008 FAM236AA0A1B0GUQ0 79 aa14.6□□□□□ -0.07
USP42-202ENST00000404008 FAM236BA0A1B0GV22 79 aa14.6□□□□□ -0.07
USP42-202ENST00000404008 C4orf26Q17RF5 130 aa14.57□□□□□ -0.08
USP42-202ENST00000404008 M0R2T5 61 aa14.55□□□□□ -0.08
USP42-202ENST00000404008 C5orf47Q569G3 176 aa14.54□□□□□ -0.08
USP42-202ENST00000404008 MP68P56378 58 aa14.52□□□□□ -0.08
USP42-202ENST00000404008 C1orf64Q8NEQ6 169 aa14.51□□□□□ -0.09
USP42-202ENST00000404008 LINC00208Q96KT6 92 aa14.5□□□□□ -0.09
USP42-202ENST00000404008 SMIM20Q8N5G0 67 aa14.46□□□□□ -0.1
USP42-202ENST00000404008 H1FX-AS1Q4G0G2 97 aa14.45□□□□□ -0.1
USP42-202ENST00000404008 TRAV7A0A075B6U4 112 aa14.42□□□□□ -0.1
USP42-202ENST00000404008 H3BPC8 53 aa14.41□□□□□ -0.1
USP42-202ENST00000404008 KRTAP10-6P60371 365 aaPredicted RBP14.39□□□□□ -0.11
USP42-202ENST00000404008 KRTAP3-1Q9BYR8 98 aa14.38□□□□□ -0.11
USP42-202ENST00000404008 LORP23490 312 aaPredicted RBP14.35□□□□□ -0.11
USP42-202ENST00000404008 KLKP1Q107X0 134 aa14.33□□□□□ -0.12
USP42-202ENST00000404008 SERP2Q8N6R1 65 aa14.2□□□□□ -0.14
USP42-202ENST00000404008 KRTAP9-2Q9BYQ4 174 aa14.16□□□□□ -0.14
USP42-202ENST00000404008 S4R3F8 94 aa14.12□□□□□ -0.15
USP42-202ENST00000404008 KRTAP9-8Q9BYQ0 159 aa14.11□□□□□ -0.15
USP42-202ENST00000404008 A8MUN3 132 aa14.08□□□□□ -0.16
USP42-202ENST00000404008 LCA10Q71F78 164 aa14.06□□□□□ -0.16
USP42-202ENST00000404008 SNURFQ9Y675 71 aa14.06□□□□□ -0.16
USP42-202ENST00000404008 C20orf197Q8N268 126 aa14.03□□□□□ -0.16
USP42-202ENST00000404008 MT2AP02795 61 aa13.98□□□□□ -0.17
USP42-202ENST00000404008 COX7CP15954 63 aa13.96□□□□□ -0.17
USP42-202ENST00000404008 DMAC1Q96GE9 116 aa13.95□□□□□ -0.18
USP42-202ENST00000404008 KRTAP3-3Q9BYR6 98 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 80.4 ms