RNA–Protein interactions for RNA: ENST00000400337.6

COL18A1-204, Transcript of collagen type XVIII alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL18A1, Length 5,436 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL18A1-204ENST00000400337 NIPBLQ6KC79 2804 aaeCLIP10.44□□□□□ -0.741e-6■■■■□ 20.9
COL18A1-204ENST00000400337 TENM4Q6N022 2769 aa10.42□□□□□ -0.74
COL18A1-204ENST00000400337 CRYBG3Q68DQ2 2970 aa10.41□□□□□ -0.74
COL18A1-204ENST00000400337 ASB16-AS1Q495Z4 193 aa10.41□□□□□ -0.74
COL18A1-204ENST00000400337 M0QZ58 72 aa10.4□□□□□ -0.74
COL18A1-204ENST00000400337 ROMO1P60602 79 aa10.39□□□□□ -0.75
COL18A1-204ENST00000400337 SPTBN5Q9NRC6 3674 aaKnown RBP10.38□□□□□ -0.75
COL18A1-204ENST00000400337 KRTAP13-1Q8IUC0 172 aa10.38□□□□□ -0.75
COL18A1-204ENST00000400337 ZANQ9Y493 2812 aa10.37□□□□□ -0.75
COL18A1-204ENST00000400337 SPEGQ15772 3267 aa10.36□□□□□ -0.75
COL18A1-204ENST00000400337 KRTAP13-2Q52LG2 175 aa10.36□□□□□ -0.75
COL18A1-204ENST00000400337 SPATA8Q6RVD6 105 aa10.36□□□□□ -0.75
COL18A1-204ENST00000400337 ADM2Q7Z4H4 148 aa10.34□□□□□ -0.75
COL18A1-204ENST00000400337 RPS29P62273 56 aaKnown RBP10.32□□□□□ -0.76
COL18A1-204ENST00000400337 DCHS2Q6V1P9 2916 aa10.32□□□□□ -0.76
COL18A1-204ENST00000400337 DMXL1Q9Y485 3027 aa10.31□□□□□ -0.76
COL18A1-204ENST00000400337 TNRC18O15417 2968 aaPredicted RBP10.31□□□□□ -0.76
COL18A1-204ENST00000400337 USP34Q70CQ2 3546 aa10.29□□□□□ -0.76
COL18A1-204ENST00000400337 H3BS24 57 aa10.21□□□□□ -0.78
COL18A1-204ENST00000400337 LOC400499M0QZD8 3231 aa10.16□□□□□ -0.78
COL18A1-204ENST00000400337 HRNRQ86YZ3 2850 aaPredicted RBP10.15□□□□□ -0.78
COL18A1-204ENST00000400337 A0A0A0MQY5 61 aa10.12□□□□□ -0.79
COL18A1-204ENST00000400337 PLAC4Q8WY50 150 aa10.1□□□□□ -0.79
COL18A1-204ENST00000400337 FBN2P35556 2912 aa10.1□□□□□ -0.79
COL18A1-204ENST00000400337 A8MU10 97 aa10.09□□□□□ -0.79
COL18A1-204ENST00000400337 NF1P21359 2839 aa10.07□□□□□ -0.8
COL18A1-204ENST00000400337 A6NN06 94 aa10.04□□□□□ -0.8
COL18A1-204ENST00000400337 A8MUU9 505 aa10.03□□□□□ -0.8
COL18A1-204ENST00000400337 MYO15AQ9UKN7 3530 aa9.96□□□□□ -0.81
COL18A1-204ENST00000400337 KRTAP25-1Q3LHN0 102 aa9.94□□□□□ -0.82
COL18A1-204ENST00000400337 C20orf166-AS1Q96NR2 134 aa9.92□□□□□ -0.82
COL18A1-204ENST00000400337 KRTAP1-4P0C5Y4 121 aa9.9□□□□□ -0.83
COL18A1-204ENST00000400337 TENM3Q9P273 2699 aa9.88□□□□□ -0.83
COL18A1-204ENST00000400337 TENM1Q9UKZ4 2725 aa9.83□□□□□ -0.84
COL18A1-204ENST00000400337 CELSR1Q9NYQ6 3014 aa9.79□□□□□ -0.84
COL18A1-204ENST00000400337 MXRA5Q9NR99 2828 aa9.77□□□□□ -0.85
COL18A1-204ENST00000400337 RELNP78509 3460 aa9.77□□□□□ -0.85
COL18A1-204ENST00000400337 XP32Q5T750 250 aa9.74□□□□□ -0.85
COL18A1-204ENST00000400337 TENM2Q9NT68 2774 aa9.72□□□□□ -0.85
COL18A1-204ENST00000400337 DCHS1Q96JQ0 3298 aa9.72□□□□□ -0.85
COL18A1-204ENST00000400337 WDFY3Q8IZQ1 3526 aa9.67□□□□□ -0.86
COL18A1-204ENST00000400337 PKD1L1Q8TDX9 2849 aa9.62□□□□□ -0.87
COL18A1-204ENST00000400337 KRTAP16-1A8MUX0 517 aa9.6□□□□□ -0.87
COL18A1-204ENST00000400337 TNP1P09430 55 aa9.59□□□□□ -0.87
COL18A1-204ENST00000400337 NDUFAF8A1L188 74 aa9.58□□□□□ -0.88
COL18A1-204ENST00000400337 TPRXLQ17RH7 258 aa9.51□□□□□ -0.89
COL18A1-204ENST00000400337 LAMA5O15230 3695 aa9.51□□□□□ -0.89
COL18A1-204ENST00000400337 A0A1B0GVY2 172 aa9.5□□□□□ -0.89
COL18A1-204ENST00000400337 TGP01266 2768 aa9.48□□□□□ -0.89
COL18A1-204ENST00000400337 ZFHX4Q86UP3 3567 aa9.47□□□□□ -0.89
COL18A1-204ENST00000400337 ASPMQ8IZT6 3477 aa9.47□□□□□ -0.89
COL18A1-204ENST00000400337 H0YAA0 97 aa9.45□□□□□ -0.9
COL18A1-204ENST00000400337 VWFP04275 2813 aa9.45□□□□□ -0.9
COL18A1-204ENST00000400337 KRTAP13-3Q3SY46 172 aa9.42□□□□□ -0.9
COL18A1-204ENST00000400337 C10orf95Q9H7T3 257 aa9.42□□□□□ -0.9
COL18A1-204ENST00000400337 PDZD2O15018 2839 aa9.41□□□□□ -0.9
COL18A1-204ENST00000400337 KRTAP10-8P60410 259 aa9.38□□□□□ -0.91
COL18A1-204ENST00000400337 FBN1P35555 2871 aaKnown RBP9.34□□□□□ -0.91
COL18A1-204ENST00000400337 PP632Q6XCG6 107 aa9.32□□□□□ -0.92
COL18A1-204ENST00000400337 NBPF19A0A087WUL8 3843 aa9.3□□□□□ -0.92
COL18A1-204ENST00000400337 P0C880 135 aa9.3□□□□□ -0.92
COL18A1-204ENST00000400337 KRTAP10-10P60014 251 aa9.24□□□□□ -0.93
COL18A1-204ENST00000400337 DMDP11532 3685 aa9.24□□□□□ -0.93
COL18A1-204ENST00000400337 OTOGQ6ZRI0 2925 aa9.22□□□□□ -0.93
COL18A1-204ENST00000400337 CSMD1Q96PZ7 3565 aa9.22□□□□□ -0.93
COL18A1-204ENST00000400337 MUC3AQ02505 3323 aa9.2□□□□□ -0.94
COL18A1-204ENST00000400337 ZFHX3Q15911 3703 aa9.16□□□□□ -0.94
COL18A1-204ENST00000400337 SMG1Q96Q15 3661 aaKnown RBP9.13□□□□□ -0.95
COL18A1-204ENST00000400337 SRRM2Q9UQ35 2752 aaKnown RBP9.07□□□□□ -0.96
COL18A1-204ENST00000400337 SVEP1Q4LDE5 3571 aa8.99□□□□□ -0.97
COL18A1-204ENST00000400337 PRO2289Q9P1D8 64 aa8.98□□□□□ -0.97
COL18A1-204ENST00000400337 ANK3Q12955 4377 aaKnown RBP8.95□□□□□ -0.98
COL18A1-204ENST00000400337 FBN3Q75N90 2809 aa8.94□□□□□ -0.98
COL18A1-204ENST00000400337 CSMD2Q7Z408 3487 aa8.93□□□□□ -0.98
COL18A1-204ENST00000400337 KRTAP12-2P59991 146 aa8.91□□□□□ -0.98
COL18A1-204ENST00000400337 CUBNO60494 3623 aa8.89□□□□□ -0.99
COL18A1-204ENST00000400337 KRTAP3-1Q9BYR8 98 aa8.87□□□□□ -0.99
COL18A1-204ENST00000400337 TRRAPQ9Y4A5 3859 aa8.79□□□□□ -1
COL18A1-204ENST00000400337 SPENQ96T58 3664 aaKnown RBP8.78□□□□□ -1
COL18A1-204ENST00000400337 MEGF8Q7Z7M0 2845 aa8.77□□□□□ -1.01
COL18A1-204ENST00000400337 KRTAP12-1P59990 96 aa8.75□□□□□ -1.01
COL18A1-204ENST00000400337 COL7A1Q02388 2944 aa8.72□□□□□ -1.01
COL18A1-204ENST00000400337 KRTAP13-4Q3LI77 160 aa8.68□□□□□ -1.02
COL18A1-204ENST00000400337 KRTAP10-6P60371 365 aaPredicted RBP8.58□□□□□ -1.04
COL18A1-204ENST00000400337 MT1HL1P0DM35 61 aa8.55□□□□□ -1.04
COL18A1-204ENST00000400337 BSNQ9UPA5 3926 aa8.52□□□□□ -1.05
COL18A1-204ENST00000400337 HUWE1Q7Z6Z7 4374 aaKnown RBP8.42□□□□□ -1.06
COL18A1-204ENST00000400337 KRTAP10-4P60372 401 aaPredicted RBP8.38□□□□□ -1.07
COL18A1-204ENST00000400337 KRTAP4-5Q9BYR2 181 aa8.32□□□□□ -1.08
COL18A1-204ENST00000400337 KRTAP3-3Q9BYR6 98 aa8.32□□□□□ -1.08
COL18A1-204ENST00000400337 VPS13CQ709C8 3753 aa8.3□□□□□ -1.08
COL18A1-204ENST00000400337 KRTAP3-2Q9BYR7 98 aa8.29□□□□□ -1.08
COL18A1-204ENST00000400337 KRTAP15-1Q3LI76 137 aa8.28□□□□□ -1.08
COL18A1-204ENST00000400337 CSMD3Q7Z407 3707 aa8.07□□□□□ -1.12
COL18A1-204ENST00000400337 ALMS1Q8TCU4 4167 aa8.01□□□□□ -1.13
COL18A1-204ENST00000400337 DNAH9Q9NYC9 4486 aa8.01□□□□□ -1.13
COL18A1-204ENST00000400337 KRTAP10-12P60413 245 aa8□□□□□ -1.13
COL18A1-204ENST00000400337 DNAH5Q8TE73 4624 aa7.97□□□□□ -1.13
COL18A1-204ENST00000400337 ZNF469Q96JG9 3925 aaPredicted RBP7.96□□□□□ -1.14
COL18A1-204ENST00000400337 LORP23490 312 aaPredicted RBP7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms