RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 SETXQ7Z333 2677 aaKnown RBP7.06□□□□□ -1.28
CCDC88C-204ENST00000389857 KRTAP7-1Q8IUC3 87 aa7.05□□□□□ -1.28
CCDC88C-204ENST00000389857 USP34Q70CQ2 3546 aa7.04□□□□□ -1.28
CCDC88C-204ENST00000389857 LOC400499M0QZD8 3231 aa7.03□□□□□ -1.28
CCDC88C-204ENST00000389857 PP632Q6XCG6 107 aa7.03□□□□□ -1.28
CCDC88C-204ENST00000389857 COL6A5A8TX70 2615 aa7.02□□□□□ -1.29
CCDC88C-204ENST00000389857 LRBAP50851 2863 aa7.02□□□□□ -1.29
CCDC88C-204ENST00000389857 UNC79Q9P2D8 2635 aa7.01□□□□□ -1.29
CCDC88C-204ENST00000389857 HRNRQ86YZ3 2850 aaPredicted RBP7.01□□□□□ -1.29
CCDC88C-204ENST00000389857 MYO15AQ9UKN7 3530 aa6.99□□□□□ -1.29
CCDC88C-204ENST00000389857 DMXL1Q9Y485 3027 aa6.99□□□□□ -1.29
CCDC88C-204ENST00000389857 GCN1Q92616 2671 aaKnown RBP6.99□□□□□ -1.29
CCDC88C-204ENST00000389857 KMT2BQ9UMN6 2715 aaPredicted RBP6.98□□□□□ -1.29
CCDC88C-204ENST00000389857 ZZEF1O43149 2961 aa6.97□□□□□ -1.29
CCDC88C-204ENST00000389857 ITPR1Q14643 2758 aa6.95□□□□□ -1.3
CCDC88C-204ENST00000389857 NOTCH1P46531 2555 aa6.94□□□□□ -1.3
CCDC88C-204ENST00000389857 COL12A1Q99715 3063 aa6.94□□□□□ -1.3
CCDC88C-204ENST00000389857 STAB2Q8WWQ8 2551 aa6.93□□□□□ -1.3
CCDC88C-204ENST00000389857 KRTAP10-8P60410 259 aa6.93□□□□□ -1.3
CCDC88C-204ENST00000389857 BAHCC1Q9P281 2608 aa6.91□□□□□ -1.3
CCDC88C-204ENST00000389857 ZANQ9Y493 2812 aa6.9□□□□□ -1.31
CCDC88C-204ENST00000389857 KRTAP21-3Q3LHN1 58 aa6.88□□□□□ -1.31
CCDC88C-204ENST00000389857 ITPR2Q14571 2701 aa6.87□□□□□ -1.31
CCDC88C-204ENST00000389857 CFAP47Q6ZTR5 3102 aa6.86□□□□□ -1.31
CCDC88C-204ENST00000389857 NBEAL2Q6ZNJ1 2754 aa6.83□□□□□ -1.32
CCDC88C-204ENST00000389857 UBR5O95071 2799 aaPredicted RBP6.83□□□□□ -1.32
CCDC88C-204ENST00000389857 XP32Q5T750 250 aa6.83□□□□□ -1.32
CCDC88C-204ENST00000389857 UTP20O75691 2785 aaKnown RBP6.81□□□□□ -1.32
CCDC88C-204ENST00000389857 PRO2289Q9P1D8 64 aa6.81□□□□□ -1.32
CCDC88C-204ENST00000389857 A0A1B0GVY2 172 aa6.8□□□□□ -1.32
CCDC88C-204ENST00000389857 WDFY3Q8IZQ1 3526 aa6.76□□□□□ -1.33
CCDC88C-204ENST00000389857 APCP25054 2843 aa6.76□□□□□ -1.33
CCDC88C-204ENST00000389857 NSD1Q96L73 2696 aaPredicted RBP6.75□□□□□ -1.33
CCDC88C-204ENST00000389857 TPRXLQ17RH7 258 aa6.74□□□□□ -1.33
CCDC88C-204ENST00000389857 DMDP11532 3685 aa6.74□□□□□ -1.33
CCDC88C-204ENST00000389857 MXRA5Q9NR99 2828 aa6.74□□□□□ -1.33
CCDC88C-204ENST00000389857 P0C880 135 aa6.74□□□□□ -1.33
CCDC88C-204ENST00000389857 H0YAA0 97 aa6.73□□□□□ -1.33
CCDC88C-204ENST00000389857 DCHS2Q6V1P9 2916 aa6.72□□□□□ -1.33
CCDC88C-204ENST00000389857 KRTAP10-10P60014 251 aa6.72□□□□□ -1.33
CCDC88C-204ENST00000389857 NF1P21359 2839 aa6.72□□□□□ -1.33
CCDC88C-204ENST00000389857 ASH1LQ9NR48 2969 aaKnown RBP6.72□□□□□ -1.33
CCDC88C-204ENST00000389857 KRTAP1-4P0C5Y4 121 aa6.71□□□□□ -1.34
CCDC88C-204ENST00000389857 NIPBLQ6KC79 2804 aaeCLIP6.69□□□□□ -1.34
CCDC88C-204ENST00000389857 CRYBG3Q68DQ2 2970 aa6.67□□□□□ -1.34
CCDC88C-204ENST00000389857 DCHS1Q96JQ0 3298 aa6.66□□□□□ -1.34
CCDC88C-204ENST00000389857 FBN2P35556 2912 aa6.64□□□□□ -1.35
CCDC88C-204ENST00000389857 RELNP78509 3460 aa6.57□□□□□ -1.36
CCDC88C-204ENST00000389857 CELSR2Q9HCU4 2923 aa6.57□□□□□ -1.36
CCDC88C-204ENST00000389857 ZFHX4Q86UP3 3567 aa6.57□□□□□ -1.36
CCDC88C-204ENST00000389857 ASPMQ8IZT6 3477 aa6.57□□□□□ -1.36
CCDC88C-204ENST00000389857 LAMA5O15230 3695 aa6.56□□□□□ -1.36
CCDC88C-204ENST00000389857 KRTAP13-3Q3SY46 172 aa6.55□□□□□ -1.36
CCDC88C-204ENST00000389857 HIVEP1P15822 2718 aa6.53□□□□□ -1.36
CCDC88C-204ENST00000389857 SMG1Q96Q15 3661 aaKnown RBP6.5□□□□□ -1.37
CCDC88C-204ENST00000389857 CELSR1Q9NYQ6 3014 aa6.4□□□□□ -1.38
CCDC88C-204ENST00000389857 TENM4Q6N022 2769 aa6.39□□□□□ -1.39
CCDC88C-204ENST00000389857 KRTAP13-4Q3LI77 160 aa6.35□□□□□ -1.39
CCDC88C-204ENST00000389857 KRTAP12-2P59991 146 aa6.34□□□□□ -1.39
CCDC88C-204ENST00000389857 PDZD2O15018 2839 aa6.34□□□□□ -1.39
CCDC88C-204ENST00000389857 TENM1Q9UKZ4 2725 aa6.33□□□□□ -1.4
CCDC88C-204ENST00000389857 VWFP04275 2813 aa6.33□□□□□ -1.4
CCDC88C-204ENST00000389857 CSMD1Q96PZ7 3565 aa6.33□□□□□ -1.4
CCDC88C-204ENST00000389857 TENM3Q9P273 2699 aa6.33□□□□□ -1.4
CCDC88C-204ENST00000389857 BSNQ9UPA5 3926 aa6.27□□□□□ -1.41
CCDC88C-204ENST00000389857 NBPF19A0A087WUL8 3843 aa6.27□□□□□ -1.41
CCDC88C-204ENST00000389857 SVEP1Q4LDE5 3571 aa6.23□□□□□ -1.41
CCDC88C-204ENST00000389857 SPENQ96T58 3664 aaKnown RBP6.22□□□□□ -1.41
CCDC88C-204ENST00000389857 KRTAP12-1P59990 96 aa6.2□□□□□ -1.42
CCDC88C-204ENST00000389857 OTOGQ6ZRI0 2925 aa6.18□□□□□ -1.42
CCDC88C-204ENST00000389857 KRTAP15-1Q3LI76 137 aa6.18□□□□□ -1.42
CCDC88C-204ENST00000389857 TGP01266 2768 aa6.08□□□□□ -1.44
CCDC88C-204ENST00000389857 PKD1L1Q8TDX9 2849 aa6.04□□□□□ -1.44
CCDC88C-204ENST00000389857 ANK3Q12955 4377 aaKnown RBP6.02□□□□□ -1.45
CCDC88C-204ENST00000389857 FBN1P35555 2871 aaKnown RBP6□□□□□ -1.45
CCDC88C-204ENST00000389857 KRTAP3-1Q9BYR8 98 aa5.98□□□□□ -1.45
CCDC88C-204ENST00000389857 CSMD2Q7Z408 3487 aa5.97□□□□□ -1.45
CCDC88C-204ENST00000389857 INE1O15225 51 aa5.95□□□□□ -1.46
CCDC88C-204ENST00000389857 CRCT1Q9UGL9 99 aa5.94□□□□□ -1.46
CCDC88C-204ENST00000389857 TENM2Q9NT68 2774 aa5.93□□□□□ -1.46
CCDC88C-204ENST00000389857 CUBNO60494 3623 aa5.9□□□□□ -1.47
CCDC88C-204ENST00000389857 KRTAP10-6P60371 365 aaPredicted RBP5.86□□□□□ -1.47
CCDC88C-204ENST00000389857 KRTAP10-12P60413 245 aa5.83□□□□□ -1.48
CCDC88C-204ENST00000389857 SRRM2Q9UQ35 2752 aaKnown RBP5.8□□□□□ -1.48
CCDC88C-204ENST00000389857 TRRAPQ9Y4A5 3859 aa5.8□□□□□ -1.48
CCDC88C-204ENST00000389857 VPS13CQ709C8 3753 aa5.79□□□□□ -1.48
CCDC88C-204ENST00000389857 ZNF469Q96JG9 3925 aaPredicted RBP5.7□□□□□ -1.5
CCDC88C-204ENST00000389857 AKAP9Q99996 3911 aa5.68□□□□□ -1.5
CCDC88C-204ENST00000389857 MEGF8Q7Z7M0 2845 aa5.67□□□□□ -1.5
CCDC88C-204ENST00000389857 ZFHX3Q15911 3703 aa5.67□□□□□ -1.5
CCDC88C-204ENST00000389857 KRTAP12-3P60328 96 aa5.63□□□□□ -1.51
CCDC88C-204ENST00000389857 KRTAP23-1A1A580 65 aa5.62□□□□□ -1.51
CCDC88C-204ENST00000389857 FBN3Q75N90 2809 aa5.62□□□□□ -1.51
CCDC88C-204ENST00000389857 MT1HL1P0DM35 61 aa5.61□□□□□ -1.51
CCDC88C-204ENST00000389857 KRTAP3-2Q9BYR7 98 aa5.61□□□□□ -1.51
CCDC88C-204ENST00000389857 KRTAP3-3Q9BYR6 98 aa5.6□□□□□ -1.51
CCDC88C-204ENST00000389857 HUWE1Q7Z6Z7 4374 aaKnown RBP5.52□□□□□ -1.53
CCDC88C-204ENST00000389857 LCE3AQ5TA76 89 aa5.52□□□□□ -1.53
CCDC88C-204ENST00000389857 COL7A1Q02388 2944 aa5.48□□□□□ -1.53
CCDC88C-204ENST00000389857 DNHD1Q96M86 4753 aa5.47□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 90.3 ms