RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 A8MWP4 228 aa15.27■□□□□ 0.04
MSX1-201ENST00000382723 MT1HL1P0DM35 61 aa15.26■□□□□ 0.03
MSX1-201ENST00000382723 OXTP01178 125 aa15.23■□□□□ 0.03
MSX1-201ENST00000382723 NDUFB1O75438 58 aa15.22■□□□□ 0.03
MSX1-201ENST00000382723 ATOX1O00244 68 aa15.21■□□□□ 0.03
MSX1-201ENST00000382723 PRR15Q8IV56 129 aa15.21■□□□□ 0.03
MSX1-201ENST00000382723 IGHV6-1A0A0B4J1U7 121 aa15.17■□□□□ 0.02
MSX1-201ENST00000382723 ABCA13Q86UQ4 5058 aa15.17■□□□□ 0.02
MSX1-201ENST00000382723 A0A1B0GVX0 72 aa15.15■□□□□ 0.02
MSX1-201ENST00000382723 RETNLBQ9BQ08 111 aa15.14■□□□□ 0.01
MSX1-201ENST00000382723 KRTAP29-1A8MX34 341 aaPredicted RBP15.11■□□□□ 0.01
MSX1-201ENST00000382723 HCG22E2RYF7 251 aa15.09■□□□□ 0.01
MSX1-201ENST00000382723 COX7CP15954 63 aa15.09■□□□□ 0.01
MSX1-201ENST00000382723 UQCRQO14949 82 aa15.08■□□□□ 0
MSX1-201ENST00000382723 WFDC13Q8IUB5 93 aa15.08■□□□□ 0
MSX1-201ENST00000382723 NOTCH2NLQ7Z3S9 236 aa15.05■□□□□ 0
MSX1-201ENST00000382723 C8orf17Q9NRJ1 99 aa15.05■□□□□ 0
MSX1-201ENST00000382723 MMP24-AS1A0A0U1RRL7 71 aa15.05■□□□□ -0
MSX1-201ENST00000382723 SERP2Q8N6R1 65 aa15.04■□□□□ -0
MSX1-201ENST00000382723 DMBT1Q9UGM3 2413 aaPredicted RBP15.02□□□□□ -0.01
MSX1-201ENST00000382723 CASC2Q6XLA1 102 aa15.02□□□□□ -0.01
MSX1-201ENST00000382723 hDV103S1A0JD37 113 aa14.98□□□□□ -0.01
MSX1-201ENST00000382723 J3QL48 77 aa14.97□□□□□ -0.01
MSX1-201ENST00000382723 LINC00313P59037 77 aa14.96□□□□□ -0.02
MSX1-201ENST00000382723 C8orf87E5RJ46 101 aa14.95□□□□□ -0.02
MSX1-201ENST00000382723 CYSTM1Q9H1C7 97 aa14.87□□□□□ -0.03
MSX1-201ENST00000382723 TMEM254Q8TBM7 123 aa14.86□□□□□ -0.03
MSX1-201ENST00000382723 MRPL34Q9BQ48 92 aaKnown RBP14.86□□□□□ -0.03
MSX1-201ENST00000382723 C9orf92A6NGG3 77 aa14.85□□□□□ -0.03
MSX1-201ENST00000382723 TRAV7A0A075B6U4 112 aa14.84□□□□□ -0.03
MSX1-201ENST00000382723 FP248Q71RG6 208 aaPredicted RBP14.84□□□□□ -0.03
MSX1-201ENST00000382723 SMIM20Q8N5G0 67 aa14.82□□□□□ -0.04
MSX1-201ENST00000382723 NDUFS5O43920 106 aa14.8□□□□□ -0.04
MSX1-201ENST00000382723 OCR1Q9BZK8 76 aa14.8□□□□□ -0.04
MSX1-201ENST00000382723 IGLV7-46A0A075B6I9 117 aa14.8□□□□□ -0.04
MSX1-201ENST00000382723 KRTAP16-1A8MUX0 517 aa14.79□□□□□ -0.04
MSX1-201ENST00000382723 PRR4Q16378 134 aa14.79□□□□□ -0.04
MSX1-201ENST00000382723 PCLOQ9Y6V0 5065 aa14.73□□□□□ -0.05
MSX1-201ENST00000382723 C20orf197Q8N268 126 aa14.72□□□□□ -0.05
MSX1-201ENST00000382723 Q8N9P0 234 aaPredicted RBP14.68□□□□□ -0.06
MSX1-201ENST00000382723 TP53AIP1Q9HCN2 124 aa14.65□□□□□ -0.06
MSX1-201ENST00000382723 KRTAP13-3Q3SY46 172 aa14.64□□□□□ -0.07
MSX1-201ENST00000382723 KLKP1Q107X0 134 aa14.62□□□□□ -0.07
MSX1-201ENST00000382723 TMEM258P61165 79 aa14.6□□□□□ -0.07
MSX1-201ENST00000382723 SNURFQ9Y675 71 aa14.58□□□□□ -0.07
MSX1-201ENST00000382723 C20orf166-AS1Q96NR2 134 aa14.56□□□□□ -0.08
MSX1-201ENST00000382723 C5orf47Q569G3 176 aa14.54□□□□□ -0.08
MSX1-201ENST00000382723 A8MUU9 505 aa14.54□□□□□ -0.08
MSX1-201ENST00000382723 H0Y9P7 68 aa14.54□□□□□ -0.08
MSX1-201ENST00000382723 TRAV22A0A0B4J277 110 aa14.53□□□□□ -0.08
MSX1-201ENST00000382723 H7BZZ5 65 aa14.53□□□□□ -0.08
MSX1-201ENST00000382723 Q5W150 140 aa14.53□□□□□ -0.08
MSX1-201ENST00000382723 RPS28P62857 69 aaKnown RBP14.52□□□□□ -0.09
MSX1-201ENST00000382723 TPRXLQ17RH7 258 aa14.51□□□□□ -0.09
MSX1-201ENST00000382723 XP32Q5T750 250 aa14.51□□□□□ -0.09
MSX1-201ENST00000382723 MP68P56378 58 aa14.49□□□□□ -0.09
MSX1-201ENST00000382723 A0A0U1RQV1 116 aa14.46□□□□□ -0.09
MSX1-201ENST00000382723 Q75L30 129 aa14.46□□□□□ -0.09
MSX1-201ENST00000382723 LINC00208Q96KT6 92 aa14.45□□□□□ -0.1
MSX1-201ENST00000382723 ZCCHC13Q8WW36 166 aaKnown RBP14.42□□□□□ -0.1
MSX1-201ENST00000382723 NDUFC1O43677 76 aa14.4□□□□□ -0.1
MSX1-201ENST00000382723 C1orf64Q8NEQ6 169 aa14.39□□□□□ -0.11
MSX1-201ENST00000382723 FAM236DA0A1B0GTK5 79 aa14.38□□□□□ -0.11
MSX1-201ENST00000382723 FAM236CP0DP71 79 aa14.38□□□□□ -0.11
MSX1-201ENST00000382723 RPL37P61927 97 aaKnown RBP14.38□□□□□ -0.11
MSX1-201ENST00000382723 LPAP08519 4548 aa14.37□□□□□ -0.11
MSX1-201ENST00000382723 H3BPC8 53 aa14.35□□□□□ -0.11
MSX1-201ENST00000382723 HERC1Q15751 4861 aa14.34□□□□□ -0.11
MSX1-201ENST00000382723 ATP11AUNQ6ZP68 121 aa14.31□□□□□ -0.12
MSX1-201ENST00000382723 LOC101927531A0A1B0GV80 90 aa14.27□□□□□ -0.13
MSX1-201ENST00000382723 IGKV2D-30A0A075B6S6 120 aa14.25□□□□□ -0.13
MSX1-201ENST00000382723 IGKV2-30P06310 120 aa14.25□□□□□ -0.13
MSX1-201ENST00000382723 CYP4F30PQ9H0H9 118 aa14.2□□□□□ -0.14
MSX1-201ENST00000382723 ATP5EP56381 51 aaPredicted RBP14.19□□□□□ -0.14
MSX1-201ENST00000382723 PCOTHQ58A44 107 aa14.19□□□□□ -0.14
MSX1-201ENST00000382723 LRP2P98164 4655 aa14.19□□□□□ -0.14
MSX1-201ENST00000382723 SERP1Q9Y6X1 66 aa14.15□□□□□ -0.14
MSX1-201ENST00000382723 C7orf65Q6ZTY9 151 aa14.13□□□□□ -0.15
MSX1-201ENST00000382723 HMCN2Q8NDA2 5059 aa14.11□□□□□ -0.15
MSX1-201ENST00000382723 SPINK7P58062 85 aa14.09□□□□□ -0.15
MSX1-201ENST00000382723 SEC61BP60468 96 aaKnown RBP14.03□□□□□ -0.16
MSX1-201ENST00000382723 HRES1P13985 223 aa13.99□□□□□ -0.17
MSX1-201ENST00000382723 SPANXA2-OT1Q8N9U9 137 aa13.9□□□□□ -0.18
MSX1-201ENST00000382723 C4orf26Q17RF5 130 aa13.88□□□□□ -0.19
MSX1-201ENST00000382723 SMIM26A0A096LP01 95 aa13.84□□□□□ -0.19
MSX1-201ENST00000382723 MUC17Q685J3 4493 aa13.8□□□□□ -0.2
MSX1-201ENST00000382723 KRTAP4-1Q9BYQ7 146 aa13.78□□□□□ -0.2
MSX1-201ENST00000382723 DMAC1Q96GE9 116 aa13.7□□□□□ -0.22
MSX1-201ENST00000382723 COX6B2Q6YFQ2 88 aa13.67□□□□□ -0.22
MSX1-201ENST00000382723 KRTAP3-1Q9BYR8 98 aa13.66□□□□□ -0.22
MSX1-201ENST00000382723 PRO0628Q9UI54 55 aa13.64□□□□□ -0.23
MSX1-201ENST00000382723 ACYP2P14621 99 aa13.61□□□□□ -0.23
MSX1-201ENST00000382723 MPLKIPQ8TAP9 179 aa13.61□□□□□ -0.23
MSX1-201ENST00000382723 RBM12B-AS1Q9P1G2 102 aa13.59□□□□□ -0.23
MSX1-201ENST00000382723 A8MUN3 132 aa13.58□□□□□ -0.23
MSX1-201ENST00000382723 UBR4Q5T4S7 5183 aa13.55□□□□□ -0.24
MSX1-201ENST00000382723 COA5Q86WW8 74 aa13.55□□□□□ -0.24
MSX1-201ENST00000382723 MUC2Q02817 5179 aa13.54□□□□□ -0.24
MSX1-201ENST00000382723 Q1T7F1 81 aa13.47□□□□□ -0.25
MSX1-201ENST00000382723 CHKB-CPT1BH3BT56 60 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms