RNA–Protein interactions for RNA: ENST00000378122.4

PCDHA9-201, Transcript of protocadherin alpha 9, humanhuman

BASIC

Gene PCDHA9, Length 6,900 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA9-201ENST00000378122 KMT2BQ9UMN6 2715 aaPredicted RBP6.72□□□□□ -1.33
PCDHA9-201ENST00000378122 NDUFAF8A1L188 74 aa6.71□□□□□ -1.34
PCDHA9-201ENST00000378122 KRTAP13-2Q52LG2 175 aa6.71□□□□□ -1.34
PCDHA9-201ENST00000378122 KRTAP13-1Q8IUC0 172 aa6.7□□□□□ -1.34
PCDHA9-201ENST00000378122 GCN1Q92616 2671 aaKnown RBP6.69□□□□□ -1.34
PCDHA9-201ENST00000378122 NBEAL2Q6ZNJ1 2754 aa6.68□□□□□ -1.34
PCDHA9-201ENST00000378122 KRTAP10-8P60410 259 aa6.68□□□□□ -1.34
PCDHA9-201ENST00000378122 DSPP15924 2871 aaKnown RBP6.68□□□□□ -1.34
PCDHA9-201ENST00000378122 LOC400499M0QZD8 3231 aa6.67□□□□□ -1.34
PCDHA9-201ENST00000378122 RPS29P62273 56 aaKnown RBP6.67□□□□□ -1.34
PCDHA9-201ENST00000378122 LRBAP50851 2863 aa6.67□□□□□ -1.34
PCDHA9-201ENST00000378122 COL12A1Q99715 3063 aa6.63□□□□□ -1.35
PCDHA9-201ENST00000378122 ITPR2Q14571 2701 aa6.63□□□□□ -1.35
PCDHA9-201ENST00000378122 ADGRG4Q8IZF6 3080 aa6.62□□□□□ -1.35
PCDHA9-201ENST00000378122 FRYLO94915 3013 aa6.62□□□□□ -1.35
PCDHA9-201ENST00000378122 NBPF19A0A087WUL8 3843 aa6.62□□□□□ -1.35
PCDHA9-201ENST00000378122 TACC2O95359 2948 aa6.61□□□□□ -1.35
PCDHA9-201ENST00000378122 ZZEF1O43149 2961 aa6.61□□□□□ -1.35
PCDHA9-201ENST00000378122 C10orf95Q9H7T3 257 aa6.61□□□□□ -1.35
PCDHA9-201ENST00000378122 DCHS1Q96JQ0 3298 aa6.6□□□□□ -1.35
PCDHA9-201ENST00000378122 KRTAP10-10P60014 251 aa6.59□□□□□ -1.35
PCDHA9-201ENST00000378122 ZNF292O60281 2723 aa6.56□□□□□ -1.36
PCDHA9-201ENST00000378122 IGSF10Q6WRI0 2623 aa6.53□□□□□ -1.36
PCDHA9-201ENST00000378122 ZFHX4Q86UP3 3567 aa6.51□□□□□ -1.37
PCDHA9-201ENST00000378122 LAMA5O15230 3695 aa6.51□□□□□ -1.37
PCDHA9-201ENST00000378122 TNRC18O15417 2968 aaPredicted RBP6.5□□□□□ -1.37
PCDHA9-201ENST00000378122 APCP25054 2843 aa6.49□□□□□ -1.37
PCDHA9-201ENST00000378122 HIVEP1P15822 2718 aa6.45□□□□□ -1.38
PCDHA9-201ENST00000378122 TNP1P09430 55 aa6.45□□□□□ -1.38
PCDHA9-201ENST00000378122 NSD1Q96L73 2696 aaPredicted RBP6.44□□□□□ -1.38
PCDHA9-201ENST00000378122 H0YAA0 97 aa6.43□□□□□ -1.38
PCDHA9-201ENST00000378122 UTP20O75691 2785 aaKnown RBP6.41□□□□□ -1.38
PCDHA9-201ENST00000378122 UBR5O95071 2799 aaPredicted RBP6.4□□□□□ -1.39
PCDHA9-201ENST00000378122 TENM4Q6N022 2769 aa6.35□□□□□ -1.39
PCDHA9-201ENST00000378122 FLNCQ14315 2725 aa6.33□□□□□ -1.4
PCDHA9-201ENST00000378122 CSMD1Q96PZ7 3565 aa6.33□□□□□ -1.4
PCDHA9-201ENST00000378122 RELNP78509 3460 aa6.33□□□□□ -1.4
PCDHA9-201ENST00000378122 KRTAP1-4P0C5Y4 121 aa6.33□□□□□ -1.4
PCDHA9-201ENST00000378122 XP32Q5T750 250 aa6.32□□□□□ -1.4
PCDHA9-201ENST00000378122 P0C880 135 aa6.3□□□□□ -1.4
PCDHA9-201ENST00000378122 DMXL1Q9Y485 3027 aa6.29□□□□□ -1.4
PCDHA9-201ENST00000378122 PRO2289Q9P1D8 64 aa6.29□□□□□ -1.4
PCDHA9-201ENST00000378122 CELSR2Q9HCU4 2923 aa6.27□□□□□ -1.41
PCDHA9-201ENST00000378122 PP632Q6XCG6 107 aa6.26□□□□□ -1.41
PCDHA9-201ENST00000378122 CELSR1Q9NYQ6 3014 aa6.26□□□□□ -1.41
PCDHA9-201ENST00000378122 NBEAQ8NFP9 2946 aa6.24□□□□□ -1.41
PCDHA9-201ENST00000378122 ITPR1Q14643 2758 aa6.23□□□□□ -1.41
PCDHA9-201ENST00000378122 TPRXLQ17RH7 258 aa6.2□□□□□ -1.42
PCDHA9-201ENST00000378122 ZFHX3Q15911 3703 aa6.19□□□□□ -1.42
PCDHA9-201ENST00000378122 CUBNO60494 3623 aa6.18□□□□□ -1.42
PCDHA9-201ENST00000378122 TENM1Q9UKZ4 2725 aa6.18□□□□□ -1.42
PCDHA9-201ENST00000378122 SPENQ96T58 3664 aaKnown RBP6.17□□□□□ -1.42
PCDHA9-201ENST00000378122 CRCT1Q9UGL9 99 aa6.12□□□□□ -1.43
PCDHA9-201ENST00000378122 TENM2Q9NT68 2774 aa6.12□□□□□ -1.43
PCDHA9-201ENST00000378122 SMG1Q96Q15 3661 aaKnown RBP6.11□□□□□ -1.43
PCDHA9-201ENST00000378122 DCHS2Q6V1P9 2916 aa6.11□□□□□ -1.43
PCDHA9-201ENST00000378122 PKD1L1Q8TDX9 2849 aa6.08□□□□□ -1.44
PCDHA9-201ENST00000378122 KRTAP13-3Q3SY46 172 aa6.08□□□□□ -1.44
PCDHA9-201ENST00000378122 VWFP04275 2813 aa6.06□□□□□ -1.44
PCDHA9-201ENST00000378122 DMDP11532 3685 aa6.06□□□□□ -1.44
PCDHA9-201ENST00000378122 KRTAP12-2P59991 146 aa6.04□□□□□ -1.44
PCDHA9-201ENST00000378122 NF1P21359 2839 aa6.03□□□□□ -1.44
PCDHA9-201ENST00000378122 SVEP1Q4LDE5 3571 aa5.99□□□□□ -1.45
PCDHA9-201ENST00000378122 MUC3AQ02505 3323 aa5.97□□□□□ -1.45
PCDHA9-201ENST00000378122 NIPBLQ6KC79 2804 aaeCLIP5.97□□□□□ -1.45
PCDHA9-201ENST00000378122 HRNRQ86YZ3 2850 aaPredicted RBP5.95□□□□□ -1.46
PCDHA9-201ENST00000378122 CSMD2Q7Z408 3487 aa5.95□□□□□ -1.46
PCDHA9-201ENST00000378122 ZANQ9Y493 2812 aa5.94□□□□□ -1.46
PCDHA9-201ENST00000378122 FBN2P35556 2912 aa5.93□□□□□ -1.46
PCDHA9-201ENST00000378122 KRTAP12-1P59990 96 aa5.86□□□□□ -1.47
PCDHA9-201ENST00000378122 KRTAP13-4Q3LI77 160 aa5.83□□□□□ -1.48
PCDHA9-201ENST00000378122 TENM3Q9P273 2699 aa5.83□□□□□ -1.48
PCDHA9-201ENST00000378122 KRTAP3-1Q9BYR8 98 aa5.82□□□□□ -1.48
PCDHA9-201ENST00000378122 PDZD2O15018 2839 aa5.82□□□□□ -1.48
PCDHA9-201ENST00000378122 KRTAP4-5Q9BYR2 181 aa5.72□□□□□ -1.49
PCDHA9-201ENST00000378122 TGP01266 2768 aa5.71□□□□□ -1.5
PCDHA9-201ENST00000378122 KRTAP15-1Q3LI76 137 aa5.69□□□□□ -1.5
PCDHA9-201ENST00000378122 CSMD3Q7Z407 3707 aa5.68□□□□□ -1.5
PCDHA9-201ENST00000378122 ANK3Q12955 4377 aaKnown RBP5.65□□□□□ -1.5
PCDHA9-201ENST00000378122 LORP23490 312 aaPredicted RBP5.65□□□□□ -1.5
PCDHA9-201ENST00000378122 KRTAP10-6P60371 365 aaPredicted RBP5.65□□□□□ -1.51
PCDHA9-201ENST00000378122 MEGF8Q7Z7M0 2845 aa5.62□□□□□ -1.51
PCDHA9-201ENST00000378122 SRRM2Q9UQ35 2752 aaKnown RBP5.62□□□□□ -1.51
PCDHA9-201ENST00000378122 MXRA5Q9NR99 2828 aa5.61□□□□□ -1.51
PCDHA9-201ENST00000378122 VPS13CQ709C8 3753 aa5.57□□□□□ -1.52
PCDHA9-201ENST00000378122 TRRAPQ9Y4A5 3859 aa5.56□□□□□ -1.52
PCDHA9-201ENST00000378122 COL7A1Q02388 2944 aa5.49□□□□□ -1.53
PCDHA9-201ENST00000378122 HUWE1Q7Z6Z7 4374 aaKnown RBP5.45□□□□□ -1.54
PCDHA9-201ENST00000378122 FBN1P35555 2871 aaKnown RBP5.45□□□□□ -1.54
PCDHA9-201ENST00000378122 KRTAP3-2Q9BYR7 98 aa5.44□□□□□ -1.54
PCDHA9-201ENST00000378122 KRTAP3-3Q9BYR6 98 aa5.44□□□□□ -1.54
PCDHA9-201ENST00000378122 BSNQ9UPA5 3926 aa5.43□□□□□ -1.54
PCDHA9-201ENST00000378122 INE1O15225 51 aa5.42□□□□□ -1.54
PCDHA9-201ENST00000378122 FBN3Q75N90 2809 aa5.41□□□□□ -1.54
PCDHA9-201ENST00000378122 MT1HL1P0DM35 61 aa5.38□□□□□ -1.55
PCDHA9-201ENST00000378122 AKAP9Q99996 3911 aa5.34□□□□□ -1.56
PCDHA9-201ENST00000378122 ALMS1Q8TCU4 4167 aa5.31□□□□□ -1.56
PCDHA9-201ENST00000378122 KRTAP10-12P60413 245 aa5.3□□□□□ -1.56
PCDHA9-201ENST00000378122 KRTAP8-1Q8IUC2 63 aa5.28□□□□□ -1.56
PCDHA9-201ENST00000378122 KRTAP10-5P60370 271 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms