RNA–Protein interactions for RNA: ENST00000377298.8

CLSTN1-202, Transcript of calsyntenin 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN1, Length 5,221 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN1-202ENST00000377298 NOTCH2NLQ7Z3S9 236 aa10.23□□□□□ -0.77
CLSTN1-202ENST00000377298 KRTAP13-2Q52LG2 175 aa10.22□□□□□ -0.77
CLSTN1-202ENST00000377298 M0QZ58 72 aa10.22□□□□□ -0.77
CLSTN1-202ENST00000377298 SPTBN5Q9NRC6 3674 aaKnown RBP10.2□□□□□ -0.78
CLSTN1-202ENST00000377298 ZANQ9Y493 2812 aa10.16□□□□□ -0.78
CLSTN1-202ENST00000377298 CELSR2Q9HCU4 2923 aa10.15□□□□□ -0.78
CLSTN1-202ENST00000377298 DMXL1Q9Y485 3027 aa10.15□□□□□ -0.78
CLSTN1-202ENST00000377298 PLAC4Q8WY50 150 aa10.13□□□□□ -0.79
CLSTN1-202ENST00000377298 ASH1LQ9NR48 2969 aaKnown RBP10.13□□□□□ -0.79
CLSTN1-202ENST00000377298 RPL37P61927 97 aaKnown RBP10.12□□□□□ -0.79
CLSTN1-202ENST00000377298 CRYBG3Q68DQ2 2970 aa10.12□□□□□ -0.79
CLSTN1-202ENST00000377298 H1FX-AS1Q4G0G2 97 aa10.11□□□□□ -0.79
CLSTN1-202ENST00000377298 ADM2Q7Z4H4 148 aa10.09□□□□□ -0.79
CLSTN1-202ENST00000377298 SPEGQ15772 3267 aa10.09□□□□□ -0.79
CLSTN1-202ENST00000377298 DCHS2Q6V1P9 2916 aa10.07□□□□□ -0.8
CLSTN1-202ENST00000377298 CFAP47Q6ZTR5 3102 aa10.04□□□□□ -0.8
CLSTN1-202ENST00000377298 HRNRQ86YZ3 2850 aaPredicted RBP10.02□□□□□ -0.8
CLSTN1-202ENST00000377298 H3BS24 57 aa10.01□□□□□ -0.81
CLSTN1-202ENST00000377298 USP34Q70CQ2 3546 aa10.01□□□□□ -0.81
CLSTN1-202ENST00000377298 A6NN06 94 aa9.98□□□□□ -0.81
CLSTN1-202ENST00000377298 SPATA8Q6RVD6 105 aa9.98□□□□□ -0.81
CLSTN1-202ENST00000377298 ROMO1P60602 79 aa9.93□□□□□ -0.82
CLSTN1-202ENST00000377298 A8MU10 97 aa9.91□□□□□ -0.82
CLSTN1-202ENST00000377298 LOC400499M0QZD8 3231 aa9.91□□□□□ -0.82
CLSTN1-202ENST00000377298 C20orf166-AS1Q96NR2 134 aa9.88□□□□□ -0.83
CLSTN1-202ENST00000377298 A8MUU9 505 aa9.86□□□□□ -0.83
CLSTN1-202ENST00000377298 NF1P21359 2839 aa9.86□□□□□ -0.83
CLSTN1-202ENST00000377298 KRTAP1-4P0C5Y4 121 aa9.84□□□□□ -0.83
CLSTN1-202ENST00000377298 FBN2P35556 2912 aa9.82□□□□□ -0.84
CLSTN1-202ENST00000377298 A0A0A0MQY5 61 aa9.75□□□□□ -0.85
CLSTN1-202ENST00000377298 MYO15AQ9UKN7 3530 aa9.72□□□□□ -0.85
CLSTN1-202ENST00000377298 MXRA5Q9NR99 2828 aa9.71□□□□□ -0.86
CLSTN1-202ENST00000377298 TENM3Q9P273 2699 aa9.66□□□□□ -0.86
CLSTN1-202ENST00000377298 KRTAP25-1Q3LHN0 102 aa9.66□□□□□ -0.86
CLSTN1-202ENST00000377298 TENM1Q9UKZ4 2725 aa9.65□□□□□ -0.86
CLSTN1-202ENST00000377298 XP32Q5T750 250 aa9.65□□□□□ -0.86
CLSTN1-202ENST00000377298 TENM2Q9NT68 2774 aa9.61□□□□□ -0.87
CLSTN1-202ENST00000377298 TPRXLQ17RH7 258 aa9.57□□□□□ -0.88
CLSTN1-202ENST00000377298 CELSR1Q9NYQ6 3014 aa9.55□□□□□ -0.88
CLSTN1-202ENST00000377298 RELNP78509 3460 aa9.49□□□□□ -0.89
CLSTN1-202ENST00000377298 PDZD2O15018 2839 aa9.49□□□□□ -0.89
CLSTN1-202ENST00000377298 A0A1B0GVY2 172 aa9.47□□□□□ -0.89
CLSTN1-202ENST00000377298 KRTAP16-1A8MUX0 517 aa9.44□□□□□ -0.9
CLSTN1-202ENST00000377298 TNP1P09430 55 aa9.44□□□□□ -0.9
CLSTN1-202ENST00000377298 DCHS1Q96JQ0 3298 aa9.43□□□□□ -0.9
CLSTN1-202ENST00000377298 KRTAP13-3Q3SY46 172 aa9.4□□□□□ -0.9
CLSTN1-202ENST00000377298 PKD1L1Q8TDX9 2849 aa9.36□□□□□ -0.91
CLSTN1-202ENST00000377298 WDFY3Q8IZQ1 3526 aa9.36□□□□□ -0.91
CLSTN1-202ENST00000377298 KRTAP10-8P60410 259 aa9.35□□□□□ -0.91
CLSTN1-202ENST00000377298 LAMA5O15230 3695 aa9.32□□□□□ -0.92
CLSTN1-202ENST00000377298 OTOGQ6ZRI0 2925 aa9.28□□□□□ -0.92
CLSTN1-202ENST00000377298 KRTAP10-10P60014 251 aa9.27□□□□□ -0.93
CLSTN1-202ENST00000377298 NDUFAF8A1L188 74 aa9.25□□□□□ -0.93
CLSTN1-202ENST00000377298 TGP01266 2768 aa9.24□□□□□ -0.93
CLSTN1-202ENST00000377298 MUC3AQ02505 3323 aa9.22□□□□□ -0.93
CLSTN1-202ENST00000377298 H0YAA0 97 aa9.21□□□□□ -0.94
CLSTN1-202ENST00000377298 ASPMQ8IZT6 3477 aa9.21□□□□□ -0.94
CLSTN1-202ENST00000377298 ZFHX4Q86UP3 3567 aa9.2□□□□□ -0.94
CLSTN1-202ENST00000377298 DMDP11532 3685 aa9.16□□□□□ -0.94
CLSTN1-202ENST00000377298 VWFP04275 2813 aa9.14□□□□□ -0.95
CLSTN1-202ENST00000377298 FBN1P35555 2871 aaKnown RBP9.11□□□□□ -0.95
CLSTN1-202ENST00000377298 PP632Q6XCG6 107 aa9.09□□□□□ -0.95
CLSTN1-202ENST00000377298 PRO2289Q9P1D8 64 aa9.09□□□□□ -0.95
CLSTN1-202ENST00000377298 CSMD1Q96PZ7 3565 aa9.08□□□□□ -0.96
CLSTN1-202ENST00000377298 NBPF19A0A087WUL8 3843 aa9.07□□□□□ -0.96
CLSTN1-202ENST00000377298 C10orf95Q9H7T3 257 aa9.04□□□□□ -0.96
CLSTN1-202ENST00000377298 P0C880 135 aa9.01□□□□□ -0.97
CLSTN1-202ENST00000377298 SMG1Q96Q15 3661 aaKnown RBP8.98□□□□□ -0.97
CLSTN1-202ENST00000377298 ANK3Q12955 4377 aaKnown RBP8.91□□□□□ -0.98
CLSTN1-202ENST00000377298 ZFHX3Q15911 3703 aa8.91□□□□□ -0.98
CLSTN1-202ENST00000377298 SVEP1Q4LDE5 3571 aa8.75□□□□□ -1.01
CLSTN1-202ENST00000377298 SRRM2Q9UQ35 2752 aaKnown RBP8.73□□□□□ -1.01
CLSTN1-202ENST00000377298 FBN3Q75N90 2809 aa8.7□□□□□ -1.02
CLSTN1-202ENST00000377298 CSMD2Q7Z408 3487 aa8.68□□□□□ -1.02
CLSTN1-202ENST00000377298 KRTAP3-1Q9BYR8 98 aa8.66□□□□□ -1.02
CLSTN1-202ENST00000377298 SPENQ96T58 3664 aaKnown RBP8.63□□□□□ -1.03
CLSTN1-202ENST00000377298 MT1HL1P0DM35 61 aa8.62□□□□□ -1.03
CLSTN1-202ENST00000377298 MEGF8Q7Z7M0 2845 aa8.59□□□□□ -1.03
CLSTN1-202ENST00000377298 KRTAP12-2P59991 146 aa8.57□□□□□ -1.04
CLSTN1-202ENST00000377298 TRRAPQ9Y4A5 3859 aa8.55□□□□□ -1.04
CLSTN1-202ENST00000377298 CUBNO60494 3623 aa8.54□□□□□ -1.04
CLSTN1-202ENST00000377298 KRTAP12-1P59990 96 aa8.5□□□□□ -1.05
CLSTN1-202ENST00000377298 KRTAP13-4Q3LI77 160 aa8.48□□□□□ -1.05
CLSTN1-202ENST00000377298 KRTAP10-4P60372 401 aaPredicted RBP8.47□□□□□ -1.05
CLSTN1-202ENST00000377298 BSNQ9UPA5 3926 aa8.45□□□□□ -1.06
CLSTN1-202ENST00000377298 COL7A1Q02388 2944 aa8.45□□□□□ -1.06
CLSTN1-202ENST00000377298 KRTAP10-6P60371 365 aaPredicted RBP8.36□□□□□ -1.07
CLSTN1-202ENST00000377298 KRTAP4-5Q9BYR2 181 aa8.34□□□□□ -1.07
CLSTN1-202ENST00000377298 HUWE1Q7Z6Z7 4374 aaKnown RBP8.34□□□□□ -1.07
CLSTN1-202ENST00000377298 KRTAP3-3Q9BYR6 98 aa8.14□□□□□ -1.11
CLSTN1-202ENST00000377298 ALMS1Q8TCU4 4167 aa8.14□□□□□ -1.11
CLSTN1-202ENST00000377298 KRTAP3-2Q9BYR7 98 aa8.09□□□□□ -1.11
CLSTN1-202ENST00000377298 KRTAP15-1Q3LI76 137 aa8.09□□□□□ -1.11
CLSTN1-202ENST00000377298 VPS13CQ709C8 3753 aa8.07□□□□□ -1.12
CLSTN1-202ENST00000377298 DNAH9Q9NYC9 4486 aa8□□□□□ -1.13
CLSTN1-202ENST00000377298 DNAH5Q8TE73 4624 aa7.9□□□□□ -1.14
CLSTN1-202ENST00000377298 ZNF469Q96JG9 3925 aaPredicted RBP7.87□□□□□ -1.15
CLSTN1-202ENST00000377298 KRTAP10-12P60413 245 aa7.86□□□□□ -1.15
CLSTN1-202ENST00000377298 AKAP9Q99996 3911 aa7.82□□□□□ -1.16
CLSTN1-202ENST00000377298 DNHD1Q96M86 4753 aa7.74□□□□□ -1.17
Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms