RNA–Protein interactions for RNA: ENST00000375604.6

MCF2L-203, Transcript of MCF.2 cell line derived transforming sequence like, humanhuman

APPRIS P3 TSL 2 BASIC

Gene MCF2L, Length 6,445 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2L-203ENST00000375604 KRTAP13-1Q8IUC0 172 aa9.51□□□□□ -0.89
MCF2L-203ENST00000375604 ITPR2Q14571 2701 aa9.5□□□□□ -0.89
MCF2L-203ENST00000375604 A0A1B0GVY2 172 aa9.49□□□□□ -0.89
MCF2L-203ENST00000375604 NOTCH1P46531 2555 aa9.47□□□□□ -0.89
MCF2L-203ENST00000375604 ASB16-AS1Q495Z4 193 aa9.46□□□□□ -0.89
MCF2L-203ENST00000375604 TNRC18O15417 2968 aaPredicted RBP9.45□□□□□ -0.9
MCF2L-203ENST00000375604 NBEAQ8NFP9 2946 aa9.45□□□□□ -0.9
MCF2L-203ENST00000375604 RPS29P62273 56 aaKnown RBP9.44□□□□□ -0.9
MCF2L-203ENST00000375604 UBR5O95071 2799 aaPredicted RBP9.41□□□□□ -0.9
MCF2L-203ENST00000375604 ASH1LQ9NR48 2969 aaKnown RBP9.41□□□□□ -0.9
MCF2L-203ENST00000375604 UTP20O75691 2785 aaKnown RBP9.39□□□□□ -0.91
MCF2L-203ENST00000375604 DMBT1Q9UGM3 2413 aaPredicted RBP9.37□□□□□ -0.91
MCF2L-203ENST00000375604 FLG2Q5D862 2391 aaPredicted RBP9.37□□□□□ -0.91
MCF2L-203ENST00000375604 DMXL1Q9Y485 3027 aa9.37□□□□□ -0.91
MCF2L-203ENST00000375604 ITPR1Q14643 2758 aa9.37□□□□□ -0.91
MCF2L-203ENST00000375604 LOC400499M0QZD8 3231 aa9.34□□□□□ -0.91
MCF2L-203ENST00000375604 ZFHX4Q86UP3 3567 aa9.34□□□□□ -0.91
MCF2L-203ENST00000375604 DCHS1Q96JQ0 3298 aa9.33□□□□□ -0.92
MCF2L-203ENST00000375604 ZZEF1O43149 2961 aa9.33□□□□□ -0.92
MCF2L-203ENST00000375604 HIVEP1P15822 2718 aa9.32□□□□□ -0.92
MCF2L-203ENST00000375604 KRTAP25-1Q3LHN0 102 aa9.31□□□□□ -0.92
MCF2L-203ENST00000375604 APCP25054 2843 aa9.28□□□□□ -0.92
MCF2L-203ENST00000375604 NSD1Q96L73 2696 aaPredicted RBP9.26□□□□□ -0.93
MCF2L-203ENST00000375604 A6NN06 94 aa9.25□□□□□ -0.93
MCF2L-203ENST00000375604 RELNP78509 3460 aa9.24□□□□□ -0.93
MCF2L-203ENST00000375604 C10orf95Q9H7T3 257 aa9.21□□□□□ -0.94
MCF2L-203ENST00000375604 XP32Q5T750 250 aa9.21□□□□□ -0.94
MCF2L-203ENST00000375604 KRTAP16-1A8MUX0 517 aa9.19□□□□□ -0.94
MCF2L-203ENST00000375604 STAB2Q8WWQ8 2551 aa9.18□□□□□ -0.94
MCF2L-203ENST00000375604 KRTAP1-4P0C5Y4 121 aa9.17□□□□□ -0.94
MCF2L-203ENST00000375604 KRTAP10-8P60410 259 aa9.17□□□□□ -0.94
MCF2L-203ENST00000375604 TNP1P09430 55 aa9.16□□□□□ -0.94
MCF2L-203ENST00000375604 NBPF19A0A087WUL8 3843 aa9.16□□□□□ -0.94
MCF2L-203ENST00000375604 CSMD1Q96PZ7 3565 aa9.14□□□□□ -0.95
MCF2L-203ENST00000375604 LAMA5O15230 3695 aa9.14□□□□□ -0.95
MCF2L-203ENST00000375604 KRTAP21-3Q3LHN1 58 aa9.13□□□□□ -0.95
MCF2L-203ENST00000375604 NDUFAF8A1L188 74 aa9.11□□□□□ -0.95
MCF2L-203ENST00000375604 DMDP11532 3685 aa9.1□□□□□ -0.95
MCF2L-203ENST00000375604 KMT2BQ9UMN6 2715 aaPredicted RBP9.09□□□□□ -0.95
MCF2L-203ENST00000375604 FLNCQ14315 2725 aa9.08□□□□□ -0.96
MCF2L-203ENST00000375604 CELSR2Q9HCU4 2923 aa9.05□□□□□ -0.96
MCF2L-203ENST00000375604 KRTAP10-10P60014 251 aa9.01□□□□□ -0.97
MCF2L-203ENST00000375604 HRNRQ86YZ3 2850 aaPredicted RBP8.97□□□□□ -0.97
MCF2L-203ENST00000375604 DCHS2Q6V1P9 2916 aa8.95□□□□□ -0.98
MCF2L-203ENST00000375604 SMG1Q96Q15 3661 aaKnown RBP8.92□□□□□ -0.98
MCF2L-203ENST00000375604 H0YAA0 97 aa8.9□□□□□ -0.99
MCF2L-203ENST00000375604 TENM4Q6N022 2769 aa8.89□□□□□ -0.99
MCF2L-203ENST00000375604 TPRXLQ17RH7 258 aa8.85□□□□□ -0.99
MCF2L-203ENST00000375604 ZANQ9Y493 2812 aa8.83□□□□□ -1
MCF2L-203ENST00000375604 FBN2P35556 2912 aa8.83□□□□□ -1
MCF2L-203ENST00000375604 P0C880 135 aa8.81□□□□□ -1
MCF2L-203ENST00000375604 KRTAP13-3Q3SY46 172 aa8.81□□□□□ -1
MCF2L-203ENST00000375604 SVEP1Q4LDE5 3571 aa8.79□□□□□ -1
MCF2L-203ENST00000375604 CELSR1Q9NYQ6 3014 aa8.79□□□□□ -1
MCF2L-203ENST00000375604 TENM2Q9NT68 2774 aa8.71□□□□□ -1.02
MCF2L-203ENST00000375604 SPENQ96T58 3664 aaKnown RBP8.7□□□□□ -1.02
MCF2L-203ENST00000375604 NF1P21359 2839 aa8.66□□□□□ -1.02
MCF2L-203ENST00000375604 NIPBLQ6KC79 2804 aaeCLIP8.6□□□□□ -1.03
MCF2L-203ENST00000375604 PRO2289Q9P1D8 64 aa8.59□□□□□ -1.03
MCF2L-203ENST00000375604 PP632Q6XCG6 107 aa8.58□□□□□ -1.04
MCF2L-203ENST00000375604 CSMD2Q7Z408 3487 aa8.56□□□□□ -1.04
MCF2L-203ENST00000375604 ANK3Q12955 4377 aaKnown RBP8.54□□□□□ -1.04
MCF2L-203ENST00000375604 TENM1Q9UKZ4 2725 aa8.54□□□□□ -1.04
MCF2L-203ENST00000375604 CUBNO60494 3623 aa8.54□□□□□ -1.04
MCF2L-203ENST00000375604 ZFHX3Q15911 3703 aa8.53□□□□□ -1.04
MCF2L-203ENST00000375604 KRTAP12-2P59991 146 aa8.53□□□□□ -1.04
MCF2L-203ENST00000375604 MUC3AQ02505 3323 aa8.51□□□□□ -1.05
MCF2L-203ENST00000375604 MXRA5Q9NR99 2828 aa8.42□□□□□ -1.06
MCF2L-203ENST00000375604 BSNQ9UPA5 3926 aa8.38□□□□□ -1.07
MCF2L-203ENST00000375604 TGP01266 2768 aa8.37□□□□□ -1.07
MCF2L-203ENST00000375604 PKD1L1Q8TDX9 2849 aa8.34□□□□□ -1.07
MCF2L-203ENST00000375604 VWFP04275 2813 aa8.32□□□□□ -1.08
MCF2L-203ENST00000375604 PDZD2O15018 2839 aa8.28□□□□□ -1.08
MCF2L-203ENST00000375604 TENM3Q9P273 2699 aa8.27□□□□□ -1.09
MCF2L-203ENST00000375604 KRTAP3-1Q9BYR8 98 aa8.23□□□□□ -1.09
MCF2L-203ENST00000375604 TRRAPQ9Y4A5 3859 aa8.23□□□□□ -1.09
MCF2L-203ENST00000375604 VPS13CQ709C8 3753 aa8.21□□□□□ -1.1
MCF2L-203ENST00000375604 KRTAP12-1P59990 96 aa8.2□□□□□ -1.1
MCF2L-203ENST00000375604 HUWE1Q7Z6Z7 4374 aaKnown RBP8.16□□□□□ -1.1
MCF2L-203ENST00000375604 FBN1P35555 2871 aaKnown RBP8.14□□□□□ -1.11
MCF2L-203ENST00000375604 KRTAP13-4Q3LI77 160 aa8.13□□□□□ -1.11
MCF2L-203ENST00000375604 KRTAP4-5Q9BYR2 181 aa8.04□□□□□ -1.12
MCF2L-203ENST00000375604 OTOGQ6ZRI0 2925 aa8.04□□□□□ -1.12
MCF2L-203ENST00000375604 KRTAP15-1Q3LI76 137 aa8.03□□□□□ -1.12
MCF2L-203ENST00000375604 CRCT1Q9UGL9 99 aa8.01□□□□□ -1.13
MCF2L-203ENST00000375604 CSMD3Q7Z407 3707 aa7.95□□□□□ -1.14
MCF2L-203ENST00000375604 AKAP9Q99996 3911 aa7.92□□□□□ -1.14
MCF2L-203ENST00000375604 MT1HL1P0DM35 61 aa7.89□□□□□ -1.15
MCF2L-203ENST00000375604 KRTAP10-6P60371 365 aaPredicted RBP7.89□□□□□ -1.15
MCF2L-203ENST00000375604 ALMS1Q8TCU4 4167 aa7.81□□□□□ -1.16
MCF2L-203ENST00000375604 FBN3Q75N90 2809 aa7.78□□□□□ -1.16
MCF2L-203ENST00000375604 MEGF8Q7Z7M0 2845 aa7.72□□□□□ -1.17
MCF2L-203ENST00000375604 ZNF469Q96JG9 3925 aaPredicted RBP7.71□□□□□ -1.18
MCF2L-203ENST00000375604 KRTAP3-3Q9BYR6 98 aa7.68□□□□□ -1.18
MCF2L-203ENST00000375604 KRTAP10-12P60413 245 aa7.64□□□□□ -1.19
MCF2L-203ENST00000375604 KRTAP3-2Q9BYR7 98 aa7.6□□□□□ -1.19
MCF2L-203ENST00000375604 KRTAP10-4P60372 401 aaPredicted RBP7.6□□□□□ -1.19
MCF2L-203ENST00000375604 SRRM2Q9UQ35 2752 aaKnown RBP7.6□□□□□ -1.19
MCF2L-203ENST00000375604 COL7A1Q02388 2944 aa7.57□□□□□ -1.2
MCF2L-203ENST00000375604 DNAH9Q9NYC9 4486 aa7.56□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms