RNA–Protein interactions for RNA: ENST00000373887.7

TRAF1-201, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 6,324 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-201ENST00000373887 SPEGQ15772 3267 aa8.16□□□□□ -1.1
TRAF1-201ENST00000373887 USP34Q70CQ2 3546 aa8.15□□□□□ -1.11
TRAF1-201ENST00000373887 TNRC18O15417 2968 aaPredicted RBP8.15□□□□□ -1.11
TRAF1-201ENST00000373887 ITPR1Q14643 2758 aa8.14□□□□□ -1.11
TRAF1-201ENST00000373887 A6NN06 94 aa8.12□□□□□ -1.11
TRAF1-201ENST00000373887 C10orf95Q9H7T3 257 aa8.11□□□□□ -1.11
TRAF1-201ENST00000373887 KRTAP7-1Q8IUC3 87 aa8.08□□□□□ -1.12
TRAF1-201ENST00000373887 UTP20O75691 2785 aaKnown RBP8.07□□□□□ -1.12
TRAF1-201ENST00000373887 ADGRG4Q8IZF6 3080 aa8.07□□□□□ -1.12
TRAF1-201ENST00000373887 KRTAP13-2Q52LG2 175 aa8.05□□□□□ -1.12
TRAF1-201ENST00000373887 KRTAP21-3Q3LHN1 58 aa8.03□□□□□ -1.12
TRAF1-201ENST00000373887 FLNCQ14315 2725 aa8.02□□□□□ -1.13
TRAF1-201ENST00000373887 STAB2Q8WWQ8 2551 aa8.02□□□□□ -1.13
TRAF1-201ENST00000373887 NSD1Q96L73 2696 aaPredicted RBP8.01□□□□□ -1.13
TRAF1-201ENST00000373887 HIVEP1P15822 2718 aa8□□□□□ -1.13
TRAF1-201ENST00000373887 TNP1P09430 55 aa7.98□□□□□ -1.13
TRAF1-201ENST00000373887 DMBT1Q9UGM3 2413 aaPredicted RBP7.98□□□□□ -1.13
TRAF1-201ENST00000373887 MYO15AQ9UKN7 3530 aa7.98□□□□□ -1.13
TRAF1-201ENST00000373887 DMXL1Q9Y485 3027 aa7.97□□□□□ -1.13
TRAF1-201ENST00000373887 NBEAQ8NFP9 2946 aa7.94□□□□□ -1.14
TRAF1-201ENST00000373887 ASH1LQ9NR48 2969 aaKnown RBP7.93□□□□□ -1.14
TRAF1-201ENST00000373887 RPS29P62273 56 aaKnown RBP7.89□□□□□ -1.15
TRAF1-201ENST00000373887 ZZEF1O43149 2961 aa7.88□□□□□ -1.15
TRAF1-201ENST00000373887 KMT2BQ9UMN6 2715 aaPredicted RBP7.88□□□□□ -1.15
TRAF1-201ENST00000373887 KRTAP13-1Q8IUC0 172 aa7.88□□□□□ -1.15
TRAF1-201ENST00000373887 TENM4Q6N022 2769 aa7.86□□□□□ -1.15
TRAF1-201ENST00000373887 APCP25054 2843 aa7.86□□□□□ -1.15
TRAF1-201ENST00000373887 KRTAP10-8P60410 259 aa7.8□□□□□ -1.16
TRAF1-201ENST00000373887 A0A1B0GVY2 172 aa7.8□□□□□ -1.16
TRAF1-201ENST00000373887 LOC400499M0QZD8 3231 aa7.79□□□□□ -1.16
TRAF1-201ENST00000373887 CELSR2Q9HCU4 2923 aa7.78□□□□□ -1.16
TRAF1-201ENST00000373887 ASPMQ8IZT6 3477 aa7.75□□□□□ -1.17
TRAF1-201ENST00000373887 DCHS2Q6V1P9 2916 aa7.7□□□□□ -1.18
TRAF1-201ENST00000373887 WDFY3Q8IZQ1 3526 aa7.69□□□□□ -1.18
TRAF1-201ENST00000373887 RELNP78509 3460 aa7.66□□□□□ -1.18
TRAF1-201ENST00000373887 XP32Q5T750 250 aa7.65□□□□□ -1.18
TRAF1-201ENST00000373887 ZANQ9Y493 2812 aa7.64□□□□□ -1.19
TRAF1-201ENST00000373887 KRTAP1-4P0C5Y4 121 aa7.64□□□□□ -1.19
TRAF1-201ENST00000373887 PP632Q6XCG6 107 aa7.63□□□□□ -1.19
TRAF1-201ENST00000373887 HRNRQ86YZ3 2850 aaPredicted RBP7.62□□□□□ -1.19
TRAF1-201ENST00000373887 NBPF19A0A087WUL8 3843 aa7.6□□□□□ -1.19
TRAF1-201ENST00000373887 NIPBLQ6KC79 2804 aaeCLIP7.56□□□□□ -1.2
TRAF1-201ENST00000373887 P0C880 135 aa7.55□□□□□ -1.2
TRAF1-201ENST00000373887 H0YAA0 97 aa7.55□□□□□ -1.2
TRAF1-201ENST00000373887 LAMA5O15230 3695 aa7.54□□□□□ -1.2
TRAF1-201ENST00000373887 FBN2P35556 2912 aa7.53□□□□□ -1.2
TRAF1-201ENST00000373887 NF1P21359 2839 aa7.53□□□□□ -1.2
TRAF1-201ENST00000373887 ZFHX4Q86UP3 3567 aa7.52□□□□□ -1.21
TRAF1-201ENST00000373887 TENM2Q9NT68 2774 aa7.52□□□□□ -1.21
TRAF1-201ENST00000373887 KRTAP10-10P60014 251 aa7.49□□□□□ -1.21
TRAF1-201ENST00000373887 DCHS1Q96JQ0 3298 aa7.45□□□□□ -1.22
TRAF1-201ENST00000373887 TENM1Q9UKZ4 2725 aa7.45□□□□□ -1.22
TRAF1-201ENST00000373887 TPRXLQ17RH7 258 aa7.44□□□□□ -1.22
TRAF1-201ENST00000373887 CELSR1Q9NYQ6 3014 aa7.44□□□□□ -1.22
TRAF1-201ENST00000373887 DMDP11532 3685 aa7.43□□□□□ -1.22
TRAF1-201ENST00000373887 PRO2289Q9P1D8 64 aa7.38□□□□□ -1.23
TRAF1-201ENST00000373887 KRTAP13-3Q3SY46 172 aa7.35□□□□□ -1.23
TRAF1-201ENST00000373887 CSMD1Q96PZ7 3565 aa7.3□□□□□ -1.24
TRAF1-201ENST00000373887 TENM3Q9P273 2699 aa7.29□□□□□ -1.24
TRAF1-201ENST00000373887 PKD1L1Q8TDX9 2849 aa7.29□□□□□ -1.24
TRAF1-201ENST00000373887 ZFHX3Q15911 3703 aa7.26□□□□□ -1.25
TRAF1-201ENST00000373887 MXRA5Q9NR99 2828 aa7.24□□□□□ -1.25
TRAF1-201ENST00000373887 VWFP04275 2813 aa7.2□□□□□ -1.26
TRAF1-201ENST00000373887 SMG1Q96Q15 3661 aaKnown RBP7.19□□□□□ -1.26
TRAF1-201ENST00000373887 MUC3AQ02505 3323 aa7.17□□□□□ -1.26
TRAF1-201ENST00000373887 PDZD2O15018 2839 aa7.16□□□□□ -1.26
TRAF1-201ENST00000373887 KRTAP12-2P59991 146 aa7.15□□□□□ -1.26
TRAF1-201ENST00000373887 CSMD2Q7Z408 3487 aa7.1□□□□□ -1.27
TRAF1-201ENST00000373887 ANK3Q12955 4377 aaKnown RBP7.09□□□□□ -1.27
TRAF1-201ENST00000373887 SVEP1Q4LDE5 3571 aa7.09□□□□□ -1.28
TRAF1-201ENST00000373887 TGP01266 2768 aa7.03□□□□□ -1.28
TRAF1-201ENST00000373887 SPENQ96T58 3664 aaKnown RBP7.01□□□□□ -1.29
TRAF1-201ENST00000373887 OTOGQ6ZRI0 2925 aa7□□□□□ -1.29
TRAF1-201ENST00000373887 KRTAP13-4Q3LI77 160 aa6.98□□□□□ -1.29
TRAF1-201ENST00000373887 FBN1P35555 2871 aaKnown RBP6.98□□□□□ -1.29
TRAF1-201ENST00000373887 CUBNO60494 3623 aa6.94□□□□□ -1.3
TRAF1-201ENST00000373887 KRTAP15-1Q3LI76 137 aa6.93□□□□□ -1.3
TRAF1-201ENST00000373887 KRTAP12-1P59990 96 aa6.9□□□□□ -1.3
TRAF1-201ENST00000373887 TRRAPQ9Y4A5 3859 aa6.86□□□□□ -1.31
TRAF1-201ENST00000373887 BSNQ9UPA5 3926 aa6.82□□□□□ -1.32
TRAF1-201ENST00000373887 KRTAP4-5Q9BYR2 181 aa6.8□□□□□ -1.32
TRAF1-201ENST00000373887 CRCT1Q9UGL9 99 aa6.76□□□□□ -1.33
TRAF1-201ENST00000373887 SRRM2Q9UQ35 2752 aaKnown RBP6.72□□□□□ -1.33
TRAF1-201ENST00000373887 KRTAP3-1Q9BYR8 98 aa6.72□□□□□ -1.33
TRAF1-201ENST00000373887 HUWE1Q7Z6Z7 4374 aaKnown RBP6.71□□□□□ -1.33
TRAF1-201ENST00000373887 MT1HL1P0DM35 61 aa6.68□□□□□ -1.34
TRAF1-201ENST00000373887 FBN3Q75N90 2809 aa6.65□□□□□ -1.35
TRAF1-201ENST00000373887 VPS13CQ709C8 3753 aa6.63□□□□□ -1.35
TRAF1-201ENST00000373887 MEGF8Q7Z7M0 2845 aa6.54□□□□□ -1.36
TRAF1-201ENST00000373887 COL7A1Q02388 2944 aa6.53□□□□□ -1.36
TRAF1-201ENST00000373887 INE1O15225 51 aa6.52□□□□□ -1.37
TRAF1-201ENST00000373887 KRTAP10-6P60371 365 aaPredicted RBP6.52□□□□□ -1.37
TRAF1-201ENST00000373887 ALMS1Q8TCU4 4167 aa6.51□□□□□ -1.37
TRAF1-201ENST00000373887 KRTAP10-12P60413 245 aa6.45□□□□□ -1.38
TRAF1-201ENST00000373887 KRTAP10-4P60372 401 aaPredicted RBP6.43□□□□□ -1.38
TRAF1-201ENST00000373887 CSMD3Q7Z407 3707 aa6.42□□□□□ -1.38
TRAF1-201ENST00000373887 AKAP9Q99996 3911 aa6.37□□□□□ -1.39
TRAF1-201ENST00000373887 ZNF469Q96JG9 3925 aaPredicted RBP6.34□□□□□ -1.39
TRAF1-201ENST00000373887 DNAH9Q9NYC9 4486 aa6.31□□□□□ -1.4
TRAF1-201ENST00000373887 KRTAP3-3Q9BYR6 98 aa6.28□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms