RNA–Protein interactions for RNA: ENST00000372146.4

GTF3C4-201, Transcript of general transcription factor IIIC subunit 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GTF3C4, Length 9,043 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GTF3C4-201ENST00000372146 LCE6AA0A183 80 aa8.73□□□□□ -1.01
GTF3C4-201ENST00000372146 NBEAQ8NFP9 2946 aa8.69□□□□□ -1.02
GTF3C4-201ENST00000372146 SPEGQ15772 3267 aa8.69□□□□□ -1.02
GTF3C4-201ENST00000372146 KRTAP1-5Q9BYS1 174 aa8.69□□□□□ -1.02
GTF3C4-201ENST00000372146 USP34Q70CQ2 3546 aa8.69□□□□□ -1.02
GTF3C4-201ENST00000372146 PP632Q6XCG6 107 aa8.63□□□□□ -1.03
GTF3C4-201ENST00000372146 MYO15AQ9UKN7 3530 aa8.62□□□□□ -1.03
GTF3C4-201ENST00000372146 KRTAP10-1P60331 282 aa8.61□□□□□ -1.03
GTF3C4-201ENST00000372146 TACC2O95359 2948 aa8.61□□□□□ -1.03
GTF3C4-201ENST00000372146 KRTAP10-2P60368 255 aa8.59□□□□□ -1.03
GTF3C4-201ENST00000372146 EYSQ5T1H1 3165 aa8.57□□□□□ -1.04
GTF3C4-201ENST00000372146 ADGRG4Q8IZF6 3080 aa8.57□□□□□ -1.04
GTF3C4-201ENST00000372146 CFAP47Q6ZTR5 3102 aa8.57□□□□□ -1.04
GTF3C4-201ENST00000372146 DMXL2Q8TDJ6 3036 aa8.57□□□□□ -1.04
GTF3C4-201ENST00000372146 SRRM2Q9UQ35 2752 aaKnown RBP8.56□□□□□ -1.04
GTF3C4-201ENST00000372146 P0C880 135 aa8.54□□□□□ -1.04
GTF3C4-201ENST00000372146 CRYBG3Q68DQ2 2970 aa8.53□□□□□ -1.04
GTF3C4-201ENST00000372146 HIVEP1P15822 2718 aa8.49□□□□□ -1.05
GTF3C4-201ENST00000372146 WDFY3Q8IZQ1 3526 aa8.49□□□□□ -1.05
GTF3C4-201ENST00000372146 ZZEF1O43149 2961 aa8.48□□□□□ -1.05
GTF3C4-201ENST00000372146 H0YAA0 97 aa8.47□□□□□ -1.05
GTF3C4-201ENST00000372146 TENM3Q9P273 2699 aa8.46□□□□□ -1.05
GTF3C4-201ENST00000372146 RPS29P62273 56 aaKnown RBP8.45□□□□□ -1.06
GTF3C4-201ENST00000372146 ATMQ13315 3056 aa8.45□□□□□ -1.06
GTF3C4-201ENST00000372146 KRTAP10-8P60410 259 aa8.44□□□□□ -1.06
GTF3C4-201ENST00000372146 DMXL1Q9Y485 3027 aa8.42□□□□□ -1.06
GTF3C4-201ENST00000372146 CELSR2Q9HCU4 2923 aa8.38□□□□□ -1.07
GTF3C4-201ENST00000372146 TGP01266 2768 aa8.37□□□□□ -1.07
GTF3C4-201ENST00000372146 NF1P21359 2839 aa8.34□□□□□ -1.07
GTF3C4-201ENST00000372146 LOC400499M0QZD8 3231 aa8.33□□□□□ -1.08
GTF3C4-201ENST00000372146 PDZD2O15018 2839 aa8.33□□□□□ -1.08
GTF3C4-201ENST00000372146 FLNCQ14315 2725 aa8.3□□□□□ -1.08
GTF3C4-201ENST00000372146 Q6ZRN7 208 aaPredicted RBP8.3□□□□□ -1.08
GTF3C4-201ENST00000372146 KRTAP13-2Q52LG2 175 aa8.25□□□□□ -1.09
GTF3C4-201ENST00000372146 ZFHX3Q15911 3703 aa8.25□□□□□ -1.09
GTF3C4-201ENST00000372146 TNRC18O15417 2968 aaPredicted RBP8.25□□□□□ -1.09
GTF3C4-201ENST00000372146 NIPBLQ6KC79 2804 aaeCLIP8.24□□□□□ -1.09
GTF3C4-201ENST00000372146 TENM1Q9UKZ4 2725 aa8.24□□□□□ -1.09
GTF3C4-201ENST00000372146 ASPMQ8IZT6 3477 aa8.21□□□□□ -1.09
GTF3C4-201ENST00000372146 CELSR1Q9NYQ6 3014 aa8.21□□□□□ -1.09
GTF3C4-201ENST00000372146 KRTAP7-1Q8IUC3 87 aa8.18□□□□□ -1.1
GTF3C4-201ENST00000372146 KRTAP13-1Q8IUC0 172 aa8.15□□□□□ -1.11
GTF3C4-201ENST00000372146 LAMA5O15230 3695 aa8.14□□□□□ -1.11
GTF3C4-201ENST00000372146 DCHS2Q6V1P9 2916 aa8.1□□□□□ -1.11
GTF3C4-201ENST00000372146 ZANQ9Y493 2812 aa8.08□□□□□ -1.12
GTF3C4-201ENST00000372146 DCHS1Q96JQ0 3298 aa8.07□□□□□ -1.12
GTF3C4-201ENST00000372146 HRNRQ86YZ3 2850 aaPredicted RBP8.06□□□□□ -1.12
GTF3C4-201ENST00000372146 A0A1B0GVY2 172 aa8.06□□□□□ -1.12
GTF3C4-201ENST00000372146 ZFHX4Q86UP3 3567 aa8.05□□□□□ -1.12
GTF3C4-201ENST00000372146 PRO2289Q9P1D8 64 aa8.02□□□□□ -1.13
GTF3C4-201ENST00000372146 FBN2P35556 2912 aa8.02□□□□□ -1.13
GTF3C4-201ENST00000372146 DMDP11532 3685 aa8.02□□□□□ -1.13
GTF3C4-201ENST00000372146 SMG1Q96Q15 3661 aaKnown RBP7.98□□□□□ -1.13
GTF3C4-201ENST00000372146 RELNP78509 3460 aa7.98□□□□□ -1.13
GTF3C4-201ENST00000372146 CSMD1Q96PZ7 3565 aa7.97□□□□□ -1.13
GTF3C4-201ENST00000372146 SPENQ96T58 3664 aaKnown RBP7.95□□□□□ -1.14
GTF3C4-201ENST00000372146 KRTAP12-2P59991 146 aa7.9□□□□□ -1.14
GTF3C4-201ENST00000372146 XP32Q5T750 250 aa7.9□□□□□ -1.15
GTF3C4-201ENST00000372146 NBPF19A0A087WUL8 3843 aa7.88□□□□□ -1.15
GTF3C4-201ENST00000372146 KRTAP10-10P60014 251 aa7.84□□□□□ -1.15
GTF3C4-201ENST00000372146 VWFP04275 2813 aa7.81□□□□□ -1.16
GTF3C4-201ENST00000372146 TENM2Q9NT68 2774 aa7.81□□□□□ -1.16
GTF3C4-201ENST00000372146 MXRA5Q9NR99 2828 aa7.81□□□□□ -1.16
GTF3C4-201ENST00000372146 KRTAP13-4Q3LI77 160 aa7.75□□□□□ -1.17
GTF3C4-201ENST00000372146 TPRXLQ17RH7 258 aa7.74□□□□□ -1.17
GTF3C4-201ENST00000372146 TENM4Q6N022 2769 aa7.71□□□□□ -1.17
GTF3C4-201ENST00000372146 OTOGQ6ZRI0 2925 aa7.71□□□□□ -1.18
GTF3C4-201ENST00000372146 INE1O15225 51 aa7.7□□□□□ -1.18
GTF3C4-201ENST00000372146 SVEP1Q4LDE5 3571 aa7.69□□□□□ -1.18
GTF3C4-201ENST00000372146 MUC3AQ02505 3323 aa7.63□□□□□ -1.19
GTF3C4-201ENST00000372146 KRTAP1-4P0C5Y4 121 aa7.62□□□□□ -1.19
GTF3C4-201ENST00000372146 PKD1L1Q8TDX9 2849 aa7.62□□□□□ -1.19
GTF3C4-201ENST00000372146 KRTAP15-1Q3LI76 137 aa7.61□□□□□ -1.19
GTF3C4-201ENST00000372146 COL7A1Q02388 2944 aa7.6□□□□□ -1.19
GTF3C4-201ENST00000372146 KRTAP12-1P59990 96 aa7.59□□□□□ -1.19
GTF3C4-201ENST00000372146 CUBNO60494 3623 aa7.55□□□□□ -1.2
GTF3C4-201ENST00000372146 VPS13CQ709C8 3753 aa7.47□□□□□ -1.21
GTF3C4-201ENST00000372146 KRTAP13-3Q3SY46 172 aa7.45□□□□□ -1.22
GTF3C4-201ENST00000372146 BSNQ9UPA5 3926 aa7.42□□□□□ -1.22
GTF3C4-201ENST00000372146 MEGF8Q7Z7M0 2845 aa7.4□□□□□ -1.22
GTF3C4-201ENST00000372146 KRTAP21-3Q3LHN1 58 aa7.32□□□□□ -1.24
GTF3C4-201ENST00000372146 AKAP9Q99996 3911 aa7.31□□□□□ -1.24
GTF3C4-201ENST00000372146 CSMD3Q7Z407 3707 aa7.28□□□□□ -1.24
GTF3C4-201ENST00000372146 CSMD2Q7Z408 3487 aa7.27□□□□□ -1.25
GTF3C4-201ENST00000372146 FBN1P35555 2871 aaKnown RBP7.26□□□□□ -1.25
GTF3C4-201ENST00000372146 TRRAPQ9Y4A5 3859 aa7.24□□□□□ -1.25
GTF3C4-201ENST00000372146 CRCT1Q9UGL9 99 aa7.18□□□□□ -1.26
GTF3C4-201ENST00000372146 FBN3Q75N90 2809 aa7.13□□□□□ -1.27
GTF3C4-201ENST00000372146 KRTAP3-1Q9BYR8 98 aa7.09□□□□□ -1.27
GTF3C4-201ENST00000372146 KRTAP10-6P60371 365 aaPredicted RBP7.05□□□□□ -1.28
GTF3C4-201ENST00000372146 KRTAP10-12P60413 245 aa6.99□□□□□ -1.29
GTF3C4-201ENST00000372146 ALMS1Q8TCU4 4167 aa6.97□□□□□ -1.29
GTF3C4-201ENST00000372146 ANK3Q12955 4377 aaKnown RBP6.96□□□□□ -1.29
GTF3C4-201ENST00000372146 KRTAP23-1A1A580 65 aa6.9□□□□□ -1.31
GTF3C4-201ENST00000372146 ZNF469Q96JG9 3925 aaPredicted RBP6.87□□□□□ -1.31
GTF3C4-201ENST00000372146 KRTAP12-3P60328 96 aa6.79□□□□□ -1.32
GTF3C4-201ENST00000372146 KRTAP10-5P60370 271 aa6.77□□□□□ -1.33
GTF3C4-201ENST00000372146 LCE3AQ5TA76 89 aa6.68□□□□□ -1.34
GTF3C4-201ENST00000372146 KRTAP3-2Q9BYR7 98 aa6.68□□□□□ -1.34
GTF3C4-201ENST00000372146 HUWE1Q7Z6Z7 4374 aaKnown RBP6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 211 ms