RNA–Protein interactions for RNA: ENST00000367256.9

SYNE1-208, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,742 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-208ENST00000367256 CRYBG3Q68DQ2 2970 aa4.09□□□□□ -1.76
SYNE1-208ENST00000367256 NBEAQ8NFP9 2946 aa4.08□□□□□ -1.76
SYNE1-208ENST00000367256 TRIOO75962 3097 aa4.08□□□□□ -1.76
SYNE1-208ENST00000367256 TGP01266 2768 aa4.07□□□□□ -1.76
SYNE1-208ENST00000367256 ZANQ9Y493 2812 aa4.05□□□□□ -1.76
SYNE1-208ENST00000367256 Q6ZRN7 208 aaPredicted RBP4.05□□□□□ -1.76
SYNE1-208ENST00000367256 KRTAP13-2Q52LG2 175 aa4.05□□□□□ -1.76
SYNE1-208ENST00000367256 TNRC18O15417 2968 aaPredicted RBP4.04□□□□□ -1.76
SYNE1-208ENST00000367256 DMXL2Q8TDJ6 3036 aa4.04□□□□□ -1.76
SYNE1-208ENST00000367256 PRUNE2Q8WUY3 3088 aa4.04□□□□□ -1.76
SYNE1-208ENST00000367256 DCHS2Q6V1P9 2916 aa4.03□□□□□ -1.76
SYNE1-208ENST00000367256 TENM4Q6N022 2769 aa4.03□□□□□ -1.76
SYNE1-208ENST00000367256 KRTAP7-1Q8IUC3 87 aa4.02□□□□□ -1.77
SYNE1-208ENST00000367256 VPS13AQ96RL7 3174 aa4.02□□□□□ -1.77
SYNE1-208ENST00000367256 ZZEF1O43149 2961 aa4.01□□□□□ -1.77
SYNE1-208ENST00000367256 LAMA1P25391 3075 aa4□□□□□ -1.77
SYNE1-208ENST00000367256 BRCA2P51587 3418 aa3.99□□□□□ -1.77
SYNE1-208ENST00000367256 HRNRQ86YZ3 2850 aaPredicted RBP3.98□□□□□ -1.77
SYNE1-208ENST00000367256 RANBP2P49792 3224 aaKnown RBP3.98□□□□□ -1.77
SYNE1-208ENST00000367256 MKI67P46013 3256 aaKnown RBP3.97□□□□□ -1.77
SYNE1-208ENST00000367256 CELSR3Q9NYQ7 3312 aa3.97□□□□□ -1.77
SYNE1-208ENST00000367256 COL12A1Q99715 3063 aa3.97□□□□□ -1.77
SYNE1-208ENST00000367256 WDFY4Q6ZS81 3184 aa3.96□□□□□ -1.78
SYNE1-208ENST00000367256 DMXL1Q9Y485 3027 aa3.96□□□□□ -1.78
SYNE1-208ENST00000367256 P0C880 135 aa3.94□□□□□ -1.78
SYNE1-208ENST00000367256 KRTAP10-8P60410 259 aa3.94□□□□□ -1.78
SYNE1-208ENST00000367256 H0YAA0 97 aa3.92□□□□□ -1.78
SYNE1-208ENST00000367256 KRTAP23-1A1A580 65 aa3.91□□□□□ -1.78
SYNE1-208ENST00000367256 FBN2P35556 2912 aa3.9□□□□□ -1.78
SYNE1-208ENST00000367256 ADGRG4Q8IZF6 3080 aa3.89□□□□□ -1.79
SYNE1-208ENST00000367256 CDH23Q9H251 3354 aa3.88□□□□□ -1.79
SYNE1-208ENST00000367256 OTOGQ6ZRI0 2925 aa3.88□□□□□ -1.79
SYNE1-208ENST00000367256 XP32Q5T750 250 aa3.88□□□□□ -1.79
SYNE1-208ENST00000367256 MXRA5Q9NR99 2828 aa3.87□□□□□ -1.79
SYNE1-208ENST00000367256 PRO2289Q9P1D8 64 aa3.87□□□□□ -1.79
SYNE1-208ENST00000367256 WDFY3Q8IZQ1 3526 aa3.86□□□□□ -1.79
SYNE1-208ENST00000367256 A0A1B0GVY2 172 aa3.85□□□□□ -1.79
SYNE1-208ENST00000367256 LAMA3Q16787 3333 aa3.84□□□□□ -1.79
SYNE1-208ENST00000367256 HTTP42858 3142 aa3.84□□□□□ -1.79
SYNE1-208ENST00000367256 PKD1L1Q8TDX9 2849 aa3.84□□□□□ -1.79
SYNE1-208ENST00000367256 FREM2Q5SZK8 3169 aa3.84□□□□□ -1.8
SYNE1-208ENST00000367256 UNC80Q8N2C7 3258 aa3.84□□□□□ -1.8
SYNE1-208ENST00000367256 INE1O15225 51 aa3.83□□□□□ -1.8
SYNE1-208ENST00000367256 ATMQ13315 3056 aa3.82□□□□□ -1.8
SYNE1-208ENST00000367256 KRTAP1-4P0C5Y4 121 aa3.8□□□□□ -1.8
SYNE1-208ENST00000367256 TENM2Q9NT68 2774 aa3.8□□□□□ -1.8
SYNE1-208ENST00000367256 KRTAP10-10P60014 251 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 VWFP04275 2813 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 VCANP13611 3396 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 BOD1L1Q8NFC6 3051 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 TPRXLQ17RH7 258 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 CELSR1Q9NYQ6 3014 aa3.79□□□□□ -1.8
SYNE1-208ENST00000367256 SZT2Q5T011 3432 aa3.77□□□□□ -1.81
SYNE1-208ENST00000367256 KRTAP13-3Q3SY46 172 aa3.75□□□□□ -1.81
SYNE1-208ENST00000367256 KRTAP21-3Q3LHN1 58 aa3.75□□□□□ -1.81
SYNE1-208ENST00000367256 LAMA5O15230 3695 aa3.74□□□□□ -1.81
SYNE1-208ENST00000367256 MYO15AQ9UKN7 3530 aa3.73□□□□□ -1.81
SYNE1-208ENST00000367256 SPTBN5Q9NRC6 3674 aaKnown RBP3.73□□□□□ -1.81
SYNE1-208ENST00000367256 ASPMQ8IZT6 3477 aa3.72□□□□□ -1.81
SYNE1-208ENST00000367256 COL7A1Q02388 2944 aa3.72□□□□□ -1.81
SYNE1-208ENST00000367256 SPEGQ15772 3267 aa3.69□□□□□ -1.82
SYNE1-208ENST00000367256 COL6A3P12111 3177 aa3.69□□□□□ -1.82
SYNE1-208ENST00000367256 KRTAP12-2P59991 146 aa3.68□□□□□ -1.82
SYNE1-208ENST00000367256 RELNP78509 3460 aa3.68□□□□□ -1.82
SYNE1-208ENST00000367256 MEGF8Q7Z7M0 2845 aa3.67□□□□□ -1.82
SYNE1-208ENST00000367256 DCHS1Q96JQ0 3298 aa3.67□□□□□ -1.82
SYNE1-208ENST00000367256 SPENQ96T58 3664 aaKnown RBP3.67□□□□□ -1.82
SYNE1-208ENST00000367256 KRTAP13-4Q3LI77 160 aa3.66□□□□□ -1.82
SYNE1-208ENST00000367256 CFAP47Q6ZTR5 3102 aa3.65□□□□□ -1.82
SYNE1-208ENST00000367256 DMDP11532 3685 aa3.64□□□□□ -1.83
SYNE1-208ENST00000367256 NBPF19A0A087WUL8 3843 aa3.62□□□□□ -1.83
SYNE1-208ENST00000367256 KRTAP12-1P59990 96 aa3.58□□□□□ -1.84
SYNE1-208ENST00000367256 FBN3Q75N90 2809 aa3.58□□□□□ -1.84
SYNE1-208ENST00000367256 KRTAP15-1Q3LI76 137 aa3.56□□□□□ -1.84
SYNE1-208ENST00000367256 ZFHX4Q86UP3 3567 aa3.55□□□□□ -1.84
SYNE1-208ENST00000367256 LOC400499M0QZD8 3231 aa3.54□□□□□ -1.84
SYNE1-208ENST00000367256 FBN1P35555 2871 aaKnown RBP3.52□□□□□ -1.85
SYNE1-208ENST00000367256 CSMD1Q96PZ7 3565 aa3.51□□□□□ -1.85
SYNE1-208ENST00000367256 AKAP9Q99996 3911 aa3.51□□□□□ -1.85
SYNE1-208ENST00000367256 SMG1Q96Q15 3661 aaKnown RBP3.51□□□□□ -1.85
SYNE1-208ENST00000367256 EYSQ5T1H1 3165 aa3.47□□□□□ -1.85
SYNE1-208ENST00000367256 VPS13CQ709C8 3753 aa3.45□□□□□ -1.86
SYNE1-208ENST00000367256 KRTAP3-1Q9BYR8 98 aa3.45□□□□□ -1.86
SYNE1-208ENST00000367256 KRTAP10-6P60371 365 aaPredicted RBP3.44□□□□□ -1.86
SYNE1-208ENST00000367256 ALMS1Q8TCU4 4167 aa3.4□□□□□ -1.87
SYNE1-208ENST00000367256 KRTAP10-12P60413 245 aa3.36□□□□□ -1.87
SYNE1-208ENST00000367256 CRCT1Q9UGL9 99 aa3.35□□□□□ -1.87
SYNE1-208ENST00000367256 MUC3AQ02505 3323 aa3.33□□□□□ -1.88
SYNE1-208ENST00000367256 CSMD2Q7Z408 3487 aa3.32□□□□□ -1.88
SYNE1-208ENST00000367256 BSNQ9UPA5 3926 aa3.32□□□□□ -1.88
SYNE1-208ENST00000367256 SVEP1Q4LDE5 3571 aa3.3□□□□□ -1.88
SYNE1-208ENST00000367256 KRTAP3-2Q9BYR7 98 aa3.3□□□□□ -1.88
SYNE1-208ENST00000367256 KRTAP3-3Q9BYR6 98 aa3.25□□□□□ -1.89
SYNE1-208ENST00000367256 CUBNO60494 3623 aa3.24□□□□□ -1.89
SYNE1-208ENST00000367256 KRTAP12-3P60328 96 aa3.23□□□□□ -1.89
SYNE1-208ENST00000367256 KRTAP19-4Q3LI73 84 aa3.23□□□□□ -1.89
SYNE1-208ENST00000367256 TRRAPQ9Y4A5 3859 aa3.21□□□□□ -1.89
SYNE1-208ENST00000367256 MT3P25713 68 aa3.19□□□□□ -1.9
SYNE1-208ENST00000367256 LCE3AQ5TA76 89 aa3.15□□□□□ -1.9
SYNE1-208ENST00000367256 CMYA5Q8N3K9 4069 aa3.14□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 51.9 ms