RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 KRTAP29-1A8MX34 341 aaPredicted RBP6.68□□□□□ -1.34
SYNE1-204ENST00000367248 LINC01558Q9Y6Z2 57 aa6.68□□□□□ -1.34
SYNE1-204ENST00000367248 KRTAP13-1Q8IUC0 172 aa6.67□□□□□ -1.34
SYNE1-204ENST00000367248 CYSTM1Q9H1C7 97 aa6.66□□□□□ -1.34
SYNE1-204ENST00000367248 RPS29P62273 56 aaKnown RBP6.65□□□□□ -1.34
SYNE1-204ENST00000367248 PLAC4Q8WY50 150 aa6.65□□□□□ -1.35
SYNE1-204ENST00000367248 KRTAP13-2Q52LG2 175 aa6.65□□□□□ -1.35
SYNE1-204ENST00000367248 ASB16-AS1Q495Z4 193 aa6.64□□□□□ -1.35
SYNE1-204ENST00000367248 NOTCH2NLQ7Z3S9 236 aa6.62□□□□□ -1.35
SYNE1-204ENST00000367248 NF1P21359 2839 aa6.62□□□□□ -1.35
SYNE1-204ENST00000367248 DCHS1Q96JQ0 3298 aa6.62□□□□□ -1.35
SYNE1-204ENST00000367248 Q75L30 129 aa6.61□□□□□ -1.35
SYNE1-204ENST00000367248 ADM2Q7Z4H4 148 aa6.61□□□□□ -1.35
SYNE1-204ENST00000367248 DMAC1Q96GE9 116 aa6.61□□□□□ -1.35
SYNE1-204ENST00000367248 TENM3Q9P273 2699 aa6.61□□□□□ -1.35
SYNE1-204ENST00000367248 TENM1Q9UKZ4 2725 aa6.58□□□□□ -1.36
SYNE1-204ENST00000367248 Q5XG85 94 aa6.58□□□□□ -1.36
SYNE1-204ENST00000367248 RELNP78509 3460 aa6.58□□□□□ -1.36
SYNE1-204ENST00000367248 TENM2Q9NT68 2774 aa6.57□□□□□ -1.36
SYNE1-204ENST00000367248 PKD1L1Q8TDX9 2849 aa6.57□□□□□ -1.36
SYNE1-204ENST00000367248 KTN1-AS1Q86SY8 53 aa6.56□□□□□ -1.36
SYNE1-204ENST00000367248 C20orf166-AS1Q96NR2 134 aa6.55□□□□□ -1.36
SYNE1-204ENST00000367248 FBN2P35556 2912 aa6.53□□□□□ -1.36
SYNE1-204ENST00000367248 LUZP6Q538Z0 58 aa6.52□□□□□ -1.37
SYNE1-204ENST00000367248 ASPMQ8IZT6 3477 aa6.52□□□□□ -1.37
SYNE1-204ENST00000367248 HRNRQ86YZ3 2850 aaPredicted RBP6.51□□□□□ -1.37
SYNE1-204ENST00000367248 MXRA5Q9NR99 2828 aa6.5□□□□□ -1.37
SYNE1-204ENST00000367248 Q5VV11 94 aa6.49□□□□□ -1.37
SYNE1-204ENST00000367248 SPATA8Q6RVD6 105 aa6.49□□□□□ -1.37
SYNE1-204ENST00000367248 WDFY3Q8IZQ1 3526 aa6.48□□□□□ -1.37
SYNE1-204ENST00000367248 H1FX-AS1Q4G0G2 97 aa6.47□□□□□ -1.37
SYNE1-204ENST00000367248 NBPF19A0A087WUL8 3843 aa6.46□□□□□ -1.38
SYNE1-204ENST00000367248 RPL37P61927 97 aaKnown RBP6.46□□□□□ -1.38
SYNE1-204ENST00000367248 LAMA5O15230 3695 aa6.45□□□□□ -1.38
SYNE1-204ENST00000367248 A0A1B0GVY2 172 aa6.45□□□□□ -1.38
SYNE1-204ENST00000367248 VWFP04275 2813 aa6.43□□□□□ -1.38
SYNE1-204ENST00000367248 CELSR1Q9NYQ6 3014 aa6.42□□□□□ -1.38
SYNE1-204ENST00000367248 A8MUU9 505 aa6.41□□□□□ -1.38
SYNE1-204ENST00000367248 KRTAP1-4P0C5Y4 121 aa6.41□□□□□ -1.38
SYNE1-204ENST00000367248 ZFHX3Q15911 3703 aa6.41□□□□□ -1.38
SYNE1-204ENST00000367248 PRAC1Q96KF2 57 aa6.34□□□□□ -1.4
SYNE1-204ENST00000367248 MUC3AQ02505 3323 aa6.3□□□□□ -1.4
SYNE1-204ENST00000367248 H3BS24 57 aa6.29□□□□□ -1.4
SYNE1-204ENST00000367248 ZFHX4Q86UP3 3567 aa6.29□□□□□ -1.4
SYNE1-204ENST00000367248 ROMO1P60602 79 aa6.28□□□□□ -1.4
SYNE1-204ENST00000367248 XP32Q5T750 250 aa6.26□□□□□ -1.41
SYNE1-204ENST00000367248 DMDP11532 3685 aa6.26□□□□□ -1.41
SYNE1-204ENST00000367248 A8MU10 97 aa6.26□□□□□ -1.41
SYNE1-204ENST00000367248 PDZD2O15018 2839 aa6.24□□□□□ -1.41
SYNE1-204ENST00000367248 KRTAP10-10P60014 251 aa6.22□□□□□ -1.41
SYNE1-204ENST00000367248 FBN1P35555 2871 aaKnown RBP6.2□□□□□ -1.42
SYNE1-204ENST00000367248 SRRM2Q9UQ35 2752 aaKnown RBP6.2□□□□□ -1.42
SYNE1-204ENST00000367248 OTOGQ6ZRI0 2925 aa6.2□□□□□ -1.42
SYNE1-204ENST00000367248 KRTAP10-8P60410 259 aa6.19□□□□□ -1.42
SYNE1-204ENST00000367248 TPRXLQ17RH7 258 aa6.18□□□□□ -1.42
SYNE1-204ENST00000367248 TGP01266 2768 aa6.14□□□□□ -1.43
SYNE1-204ENST00000367248 SMG1Q96Q15 3661 aaKnown RBP6.14□□□□□ -1.43
SYNE1-204ENST00000367248 CSMD2Q7Z408 3487 aa6.13□□□□□ -1.43
SYNE1-204ENST00000367248 KRTAP13-3Q3SY46 172 aa6.1□□□□□ -1.43
SYNE1-204ENST00000367248 KRTAP16-1A8MUX0 517 aa6.09□□□□□ -1.43
SYNE1-204ENST00000367248 CSMD1Q96PZ7 3565 aa6.08□□□□□ -1.44
SYNE1-204ENST00000367248 TNP1P09430 55 aa6.05□□□□□ -1.44
SYNE1-204ENST00000367248 CUBNO60494 3623 aa6.02□□□□□ -1.45
SYNE1-204ENST00000367248 A6NN06 94 aa5.98□□□□□ -1.45
SYNE1-204ENST00000367248 SVEP1Q4LDE5 3571 aa5.95□□□□□ -1.46
SYNE1-204ENST00000367248 A0A0A0MQY5 61 aa5.94□□□□□ -1.46
SYNE1-204ENST00000367248 FBN3Q75N90 2809 aa5.94□□□□□ -1.46
SYNE1-204ENST00000367248 KRTAP25-1Q3LHN0 102 aa5.92□□□□□ -1.46
SYNE1-204ENST00000367248 C10orf95Q9H7T3 257 aa5.89□□□□□ -1.47
SYNE1-204ENST00000367248 PRO2289Q9P1D8 64 aa5.87□□□□□ -1.47
SYNE1-204ENST00000367248 SPENQ96T58 3664 aaKnown RBP5.84□□□□□ -1.47
SYNE1-204ENST00000367248 TRRAPQ9Y4A5 3859 aa5.82□□□□□ -1.48
SYNE1-204ENST00000367248 P0C880 135 aa5.81□□□□□ -1.48
SYNE1-204ENST00000367248 ANK3Q12955 4377 aaKnown RBP5.8□□□□□ -1.48
SYNE1-204ENST00000367248 H0YAA0 97 aa5.79□□□□□ -1.48
SYNE1-204ENST00000367248 COL7A1Q02388 2944 aa5.77□□□□□ -1.49
SYNE1-204ENST00000367248 PP632Q6XCG6 107 aa5.75□□□□□ -1.49
SYNE1-204ENST00000367248 KRTAP4-5Q9BYR2 181 aa5.75□□□□□ -1.49
SYNE1-204ENST00000367248 MEGF8Q7Z7M0 2845 aa5.7□□□□□ -1.5
SYNE1-204ENST00000367248 MT1HL1P0DM35 61 aa5.67□□□□□ -1.5
SYNE1-204ENST00000367248 NDUFAF8A1L188 74 aa5.61□□□□□ -1.51
SYNE1-204ENST00000367248 KRTAP3-1Q9BYR8 98 aa5.61□□□□□ -1.51
SYNE1-204ENST00000367248 KRTAP10-4P60372 401 aaPredicted RBP5.57□□□□□ -1.52
SYNE1-204ENST00000367248 BSNQ9UPA5 3926 aa5.56□□□□□ -1.52
SYNE1-204ENST00000367248 DNHD1Q96M86 4753 aa5.5□□□□□ -1.53
SYNE1-204ENST00000367248 KRTAP12-2P59991 146 aa5.48□□□□□ -1.53
SYNE1-204ENST00000367248 VPS13CQ709C8 3753 aa5.45□□□□□ -1.54
SYNE1-204ENST00000367248 HUWE1Q7Z6Z7 4374 aaKnown RBP5.44□□□□□ -1.54
SYNE1-204ENST00000367248 KRTAP12-1P59990 96 aa5.44□□□□□ -1.54
SYNE1-204ENST00000367248 KRTAP13-4Q3LI77 160 aa5.4□□□□□ -1.54
SYNE1-204ENST00000367248 CSMD3Q7Z407 3707 aa5.4□□□□□ -1.55
SYNE1-204ENST00000367248 KRTAP10-6P60371 365 aaPredicted RBP5.39□□□□□ -1.55
SYNE1-204ENST00000367248 CRCT1Q9UGL9 99 aa5.38□□□□□ -1.55
SYNE1-204ENST00000367248 DNAH5Q8TE73 4624 aa5.35□□□□□ -1.55
SYNE1-204ENST00000367248 PLECQ15149 4684 aaKnown RBP5.3□□□□□ -1.56
SYNE1-204ENST00000367248 ZNF469Q96JG9 3925 aaPredicted RBP5.29□□□□□ -1.56
SYNE1-204ENST00000367248 KRTAP15-1Q3LI76 137 aa5.27□□□□□ -1.57
SYNE1-204ENST00000367248 KRTAP3-3Q9BYR6 98 aa5.25□□□□□ -1.57
SYNE1-204ENST00000367248 KRTAP3-2Q9BYR7 98 aa5.23□□□□□ -1.57
SYNE1-204ENST00000367248 DNAH11Q96DT5 4516 aa5.23□□□□□ -1.57
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms