RNA–Protein interactions for RNA: ENST00000357857.14

CLN3-204, Transcript of CLN3, battenin, humanhuman

TSL 2 BASIC

Gene CLN3, Length 1,720 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-204ENST00000357857 OXTP01178 125 aa10.6□□□□□ -0.71
CLN3-204ENST00000357857 MT1HL1P0DM35 61 aa10.58□□□□□ -0.72
CLN3-204ENST00000357857 IGHV6-1A0A0B4J1U7 121 aa10.57□□□□□ -0.72
CLN3-204ENST00000357857 HCG22E2RYF7 251 aa10.57□□□□□ -0.72
CLN3-204ENST00000357857 C8orf17Q9NRJ1 99 aa10.53□□□□□ -0.72
CLN3-204ENST00000357857 MMP24-AS1A0A0U1RRL7 71 aa10.53□□□□□ -0.72
CLN3-204ENST00000357857 ATOX1O00244 68 aa10.53□□□□□ -0.72
CLN3-204ENST00000357857 WFDC13Q8IUB5 93 aa10.53□□□□□ -0.72
CLN3-204ENST00000357857 MYCBP2O75592 4640 aa10.52□□□□□ -0.73
CLN3-204ENST00000357857 PCLOQ9Y6V0 5065 aa10.52□□□□□ -0.73
CLN3-204ENST00000357857 ABCA13Q86UQ4 5058 aa10.51□□□□□ -0.73
CLN3-204ENST00000357857 KRTAP29-1A8MX34 341 aaPredicted RBP10.5□□□□□ -0.73
CLN3-204ENST00000357857 CASC2Q6XLA1 102 aa10.5□□□□□ -0.73
CLN3-204ENST00000357857 C8orf87E5RJ46 101 aa10.48□□□□□ -0.73
CLN3-204ENST00000357857 NOTCH2NLQ7Z3S9 236 aa10.48□□□□□ -0.73
CLN3-204ENST00000357857 RETNLBQ9BQ08 111 aa10.48□□□□□ -0.73
CLN3-204ENST00000357857 hDV103S1A0JD37 113 aa10.47□□□□□ -0.73
CLN3-204ENST00000357857 ANAPC13Q9BS18 74 aa10.47□□□□□ -0.73
CLN3-204ENST00000357857 DMBT1Q9UGM3 2413 aaPredicted RBP10.47□□□□□ -0.73
CLN3-204ENST00000357857 LINC00313P59037 77 aa10.44□□□□□ -0.74
CLN3-204ENST00000357857 SMIM20Q8N5G0 67 aa10.42□□□□□ -0.74
CLN3-204ENST00000357857 TMEM254Q8TBM7 123 aa10.42□□□□□ -0.74
CLN3-204ENST00000357857 MRPL34Q9BQ48 92 aaKnown RBP10.4□□□□□ -0.74
CLN3-204ENST00000357857 TRAV7A0A075B6U4 112 aa10.38□□□□□ -0.75
CLN3-204ENST00000357857 SERP2Q8N6R1 65 aa10.38□□□□□ -0.75
CLN3-204ENST00000357857 OCR1Q9BZK8 76 aa10.38□□□□□ -0.75
CLN3-204ENST00000357857 FP248Q71RG6 208 aaPredicted RBP10.37□□□□□ -0.75
CLN3-204ENST00000357857 J3QL48 77 aa10.36□□□□□ -0.75
CLN3-204ENST00000357857 KRTAP16-1A8MUX0 517 aa10.33□□□□□ -0.76
CLN3-204ENST00000357857 COX7CP15954 63 aa10.33□□□□□ -0.76
CLN3-204ENST00000357857 NDUFS5O43920 106 aa10.32□□□□□ -0.76
CLN3-204ENST00000357857 C9orf92A6NGG3 77 aa10.3□□□□□ -0.76
CLN3-204ENST00000357857 IGLV7-46A0A075B6I9 117 aa10.29□□□□□ -0.76
CLN3-204ENST00000357857 UQCRQO14949 82 aa10.28□□□□□ -0.76
CLN3-204ENST00000357857 TP53AIP1Q9HCN2 124 aa10.28□□□□□ -0.76
CLN3-204ENST00000357857 Q8N9P0 234 aaPredicted RBP10.27□□□□□ -0.76
CLN3-204ENST00000357857 CCDC179H3BU77 68 aa10.25□□□□□ -0.77
CLN3-204ENST00000357857 PRR4Q16378 134 aa10.24□□□□□ -0.77
CLN3-204ENST00000357857 C5orf47Q569G3 176 aa10.21□□□□□ -0.77
CLN3-204ENST00000357857 C20orf197Q8N268 126 aa10.19□□□□□ -0.78
CLN3-204ENST00000357857 KRTAP13-3Q3SY46 172 aa10.19□□□□□ -0.78
CLN3-204ENST00000357857 TRAV22A0A0B4J277 110 aa10.18□□□□□ -0.78
CLN3-204ENST00000357857 H0Y9P7 68 aa10.18□□□□□ -0.78
CLN3-204ENST00000357857 MP68P56378 58 aa10.17□□□□□ -0.78
CLN3-204ENST00000357857 C20orf166-AS1Q96NR2 134 aa10.17□□□□□ -0.78
CLN3-204ENST00000357857 A8MUU9 505 aa10.16□□□□□ -0.78
CLN3-204ENST00000357857 SVIPQ8NHG7 77 aa10.16□□□□□ -0.78
CLN3-204ENST00000357857 Q5W150 140 aa10.14□□□□□ -0.79
CLN3-204ENST00000357857 SNURFQ9Y675 71 aa10.13□□□□□ -0.79
CLN3-204ENST00000357857 A0A0U1RQV1 116 aa10.13□□□□□ -0.79
CLN3-204ENST00000357857 KLKP1Q107X0 134 aa10.11□□□□□ -0.79
CLN3-204ENST00000357857 TPRXLQ17RH7 258 aa10.11□□□□□ -0.79
CLN3-204ENST00000357857 H3BPC8 53 aa10.1□□□□□ -0.79
CLN3-204ENST00000357857 Q75L30 129 aa10.1□□□□□ -0.79
CLN3-204ENST00000357857 LINC00208Q96KT6 92 aa10.1□□□□□ -0.79
CLN3-204ENST00000357857 XP32Q5T750 250 aa10.09□□□□□ -0.79
CLN3-204ENST00000357857 C1orf64Q8NEQ6 169 aa10.07□□□□□ -0.8
CLN3-204ENST00000357857 ZCCHC13Q8WW36 166 aaKnown RBP10.07□□□□□ -0.8
CLN3-204ENST00000357857 CYSTM1Q9H1C7 97 aa10.07□□□□□ -0.8
CLN3-204ENST00000357857 HERC1Q15751 4861 aa10.06□□□□□ -0.8
CLN3-204ENST00000357857 RPL37P61927 97 aaKnown RBP10.02□□□□□ -0.8
CLN3-204ENST00000357857 LOC101927531A0A1B0GV80 90 aa10.01□□□□□ -0.81
CLN3-204ENST00000357857 NDUFC1O43677 76 aa9.99□□□□□ -0.81
CLN3-204ENST00000357857 ATP11AUNQ6ZP68 121 aa9.97□□□□□ -0.81
CLN3-204ENST00000357857 H7BZZ5 65 aa9.96□□□□□ -0.81
CLN3-204ENST00000357857 IGKV2-30P06310 120 aa9.96□□□□□ -0.81
CLN3-204ENST00000357857 CYP4F30PQ9H0H9 118 aa9.94□□□□□ -0.82
CLN3-204ENST00000357857 IGKV2D-30A0A075B6S6 120 aa9.93□□□□□ -0.82
CLN3-204ENST00000357857 LPAP08519 4548 aa9.91□□□□□ -0.82
CLN3-204ENST00000357857 PCOTHQ58A44 107 aa9.9□□□□□ -0.82
CLN3-204ENST00000357857 C7orf65Q6ZTY9 151 aa9.89□□□□□ -0.83
CLN3-204ENST00000357857 TMEM258P61165 79 aa9.87□□□□□ -0.83
CLN3-204ENST00000357857 SPINK7P58062 85 aa9.82□□□□□ -0.84
CLN3-204ENST00000357857 LRP2P98164 4655 aa9.82□□□□□ -0.84
CLN3-204ENST00000357857 FAM236DA0A1B0GTK5 79 aa9.8□□□□□ -0.84
CLN3-204ENST00000357857 FAM236CP0DP71 79 aa9.8□□□□□ -0.84
CLN3-204ENST00000357857 SPANXA2-OT1Q8N9U9 137 aa9.79□□□□□ -0.84
CLN3-204ENST00000357857 HRES1P13985 223 aa9.78□□□□□ -0.84
CLN3-204ENST00000357857 SEC61BP60468 96 aaKnown RBP9.77□□□□□ -0.85
CLN3-204ENST00000357857 ATP5EP56381 51 aaPredicted RBP9.76□□□□□ -0.85
CLN3-204ENST00000357857 HMCN2Q8NDA2 5059 aa9.73□□□□□ -0.85
CLN3-204ENST00000357857 C4orf26Q17RF5 130 aa9.66□□□□□ -0.86
CLN3-204ENST00000357857 RPS28P62857 69 aaKnown RBP9.64□□□□□ -0.87
CLN3-204ENST00000357857 MUC17Q685J3 4493 aa9.64□□□□□ -0.87
CLN3-204ENST00000357857 DMAC1Q96GE9 116 aa9.62□□□□□ -0.87
CLN3-204ENST00000357857 SERP1Q9Y6X1 66 aa9.57□□□□□ -0.88
CLN3-204ENST00000357857 COX6B2Q6YFQ2 88 aa9.56□□□□□ -0.88
CLN3-204ENST00000357857 ACYP2P14621 99 aa9.56□□□□□ -0.88
CLN3-204ENST00000357857 KRTAP4-1Q9BYQ7 146 aa9.55□□□□□ -0.88
CLN3-204ENST00000357857 A8MUN3 132 aa9.54□□□□□ -0.88
CLN3-204ENST00000357857 KRTAP3-1Q9BYR8 98 aa9.52□□□□□ -0.89
CLN3-204ENST00000357857 COA5Q86WW8 74 aa9.51□□□□□ -0.89
CLN3-204ENST00000357857 MPLKIPQ8TAP9 179 aa9.51□□□□□ -0.89
CLN3-204ENST00000357857 RBM12B-AS1Q9P1G2 102 aa9.48□□□□□ -0.89
CLN3-204ENST00000357857 UBR4Q5T4S7 5183 aa9.47□□□□□ -0.89
CLN3-204ENST00000357857 CHKB-CPT1BH3BT56 60 aa9.41□□□□□ -0.9
CLN3-204ENST00000357857 H1FX-AS1Q4G0G2 97 aa9.36□□□□□ -0.91
CLN3-204ENST00000357857 SMIM26A0A096LP01 95 aa9.3□□□□□ -0.92
CLN3-204ENST00000357857 S4R3F8 94 aa9.28□□□□□ -0.92
CLN3-204ENST00000357857 KRTAP19-2Q3LHN2 52 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms