RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 VPS13AQ96RL7 3174 aa6.74□□□□□ -1.33
COL6A3-203ENST00000353578 CRYBG3Q68DQ2 2970 aa6.74□□□□□ -1.33
COL6A3-203ENST00000353578 TRIOO75962 3097 aa6.72□□□□□ -1.33
COL6A3-203ENST00000353578 ZZEF1O43149 2961 aa6.7□□□□□ -1.34
COL6A3-203ENST00000353578 DCHS2Q6V1P9 2916 aa6.7□□□□□ -1.34
COL6A3-203ENST00000353578 KRTAP10-2P60368 255 aa6.69□□□□□ -1.34
COL6A3-203ENST00000353578 COL12A1Q99715 3063 aa6.66□□□□□ -1.34
COL6A3-203ENST00000353578 TNRC18O15417 2968 aaPredicted RBP6.65□□□□□ -1.35
COL6A3-203ENST00000353578 PRUNE2Q8WUY3 3088 aa6.65□□□□□ -1.35
COL6A3-203ENST00000353578 KRTAP13-3Q3SY46 172 aa6.62□□□□□ -1.35
COL6A3-203ENST00000353578 GOLGB1Q14789 3259 aaKnown RBP6.59□□□□□ -1.36
COL6A3-203ENST00000353578 PRO2289Q9P1D8 64 aa6.58□□□□□ -1.36
COL6A3-203ENST00000353578 KRTAP13-4Q3LI77 160 aa6.56□□□□□ -1.36
COL6A3-203ENST00000353578 HRNRQ86YZ3 2850 aaPredicted RBP6.56□□□□□ -1.36
COL6A3-203ENST00000353578 FBN2P35556 2912 aa6.55□□□□□ -1.36
COL6A3-203ENST00000353578 MXRA5Q9NR99 2828 aa6.55□□□□□ -1.36
COL6A3-203ENST00000353578 DMXL2Q8TDJ6 3036 aa6.55□□□□□ -1.36
COL6A3-203ENST00000353578 KRTAP10-8P60410 259 aa6.55□□□□□ -1.36
COL6A3-203ENST00000353578 UTRNP46939 3433 aa6.51□□□□□ -1.37
COL6A3-203ENST00000353578 WDFY4Q6ZS81 3184 aa6.49□□□□□ -1.37
COL6A3-203ENST00000353578 TENM2Q9NT68 2774 aa6.47□□□□□ -1.37
COL6A3-203ENST00000353578 PKD1L1Q8TDX9 2849 aa6.47□□□□□ -1.37
COL6A3-203ENST00000353578 TENM4Q6N022 2769 aa6.47□□□□□ -1.37
COL6A3-203ENST00000353578 TPRXLQ17RH7 258 aa6.46□□□□□ -1.38
COL6A3-203ENST00000353578 XP32Q5T750 250 aa6.44□□□□□ -1.38
COL6A3-203ENST00000353578 ZFHX3Q15911 3703 aa6.42□□□□□ -1.38
COL6A3-203ENST00000353578 KRTAP15-1Q3LI76 137 aa6.41□□□□□ -1.38
COL6A3-203ENST00000353578 KRTAP1-4P0C5Y4 121 aa6.4□□□□□ -1.38
COL6A3-203ENST00000353578 VWFP04275 2813 aa6.37□□□□□ -1.39
COL6A3-203ENST00000353578 KRTAP12-2P59991 146 aa6.35□□□□□ -1.39
COL6A3-203ENST00000353578 FREM2Q5SZK8 3169 aa6.34□□□□□ -1.39
COL6A3-203ENST00000353578 DMXL1Q9Y485 3027 aa6.32□□□□□ -1.4
COL6A3-203ENST00000353578 KRTAP12-1P59990 96 aa6.32□□□□□ -1.4
COL6A3-203ENST00000353578 LAMA1P25391 3075 aa6.32□□□□□ -1.4
COL6A3-203ENST00000353578 CELSR1Q9NYQ6 3014 aa6.29□□□□□ -1.4
COL6A3-203ENST00000353578 ADGRG4Q8IZF6 3080 aa6.28□□□□□ -1.4
COL6A3-203ENST00000353578 KRTAP23-1A1A580 65 aa6.26□□□□□ -1.41
COL6A3-203ENST00000353578 COL7A1Q02388 2944 aa6.25□□□□□ -1.41
COL6A3-203ENST00000353578 BOD1L1Q8NFC6 3051 aa6.24□□□□□ -1.41
COL6A3-203ENST00000353578 XIRP2A4UGR9 3374 aa6.23□□□□□ -1.41
COL6A3-203ENST00000353578 MEGF8Q7Z7M0 2845 aa6.21□□□□□ -1.42
COL6A3-203ENST00000353578 RANBP2P49792 3224 aaKnown RBP6.2□□□□□ -1.42
COL6A3-203ENST00000353578 ATMQ13315 3056 aa6.19□□□□□ -1.42
COL6A3-203ENST00000353578 HTTP42858 3142 aa6.1□□□□□ -1.43
COL6A3-203ENST00000353578 USP34Q70CQ2 3546 aa6.06□□□□□ -1.44
COL6A3-203ENST00000353578 A0A1B0GVY2 172 aa6.04□□□□□ -1.44
COL6A3-203ENST00000353578 FBN3Q75N90 2809 aa6.03□□□□□ -1.44
COL6A3-203ENST00000353578 UNC80Q8N2C7 3258 aa6.03□□□□□ -1.44
COL6A3-203ENST00000353578 KRTAP10-6P60371 365 aaPredicted RBP6.02□□□□□ -1.45
COL6A3-203ENST00000353578 REV3LO60673 3130 aa6.01□□□□□ -1.45
COL6A3-203ENST00000353578 COL6A3P12111 3177 aa6□□□□□ -1.45
COL6A3-203ENST00000353578 KRTAP10-10P60014 251 aa5.99□□□□□ -1.45
COL6A3-203ENST00000353578 KRTAP21-3Q3LHN1 58 aa5.96□□□□□ -1.46
COL6A3-203ENST00000353578 MKI67P46013 3256 aaKnown RBP5.96□□□□□ -1.46
COL6A3-203ENST00000353578 KRTAP3-1Q9BYR8 98 aa5.92□□□□□ -1.46
COL6A3-203ENST00000353578 CFAP47Q6ZTR5 3102 aa5.86□□□□□ -1.47
COL6A3-203ENST00000353578 CELSR3Q9NYQ7 3312 aa5.86□□□□□ -1.47
COL6A3-203ENST00000353578 OTOGQ6ZRI0 2925 aa5.86□□□□□ -1.47
COL6A3-203ENST00000353578 FBN1P35555 2871 aaKnown RBP5.82□□□□□ -1.48
COL6A3-203ENST00000353578 LAMA3Q16787 3333 aa5.79□□□□□ -1.48
COL6A3-203ENST00000353578 KRTAP3-2Q9BYR7 98 aa5.73□□□□□ -1.49
COL6A3-203ENST00000353578 DNAH14Q0VDD8 3507 aa5.73□□□□□ -1.49
COL6A3-203ENST00000353578 KRTAP10-12P60413 245 aa5.67□□□□□ -1.5
COL6A3-203ENST00000353578 ALMS1Q8TCU4 4167 aa5.67□□□□□ -1.5
COL6A3-203ENST00000353578 VCANP13611 3396 aa5.65□□□□□ -1.5
COL6A3-203ENST00000353578 BRCA2P51587 3418 aa5.65□□□□□ -1.5
COL6A3-203ENST00000353578 KRTAP3-3Q9BYR6 98 aa5.6□□□□□ -1.51
COL6A3-203ENST00000353578 SPTBN5Q9NRC6 3674 aaKnown RBP5.59□□□□□ -1.51
COL6A3-203ENST00000353578 NBPF19A0A087WUL8 3843 aa5.59□□□□□ -1.51
COL6A3-203ENST00000353578 CDH23Q9H251 3354 aa5.58□□□□□ -1.52
COL6A3-203ENST00000353578 KRTAP12-3P60328 96 aa5.58□□□□□ -1.52
COL6A3-203ENST00000353578 SPEGQ15772 3267 aa5.53□□□□□ -1.52
COL6A3-203ENST00000353578 AKAP9Q99996 3911 aa5.51□□□□□ -1.53
COL6A3-203ENST00000353578 SPENQ96T58 3664 aaKnown RBP5.5□□□□□ -1.53
COL6A3-203ENST00000353578 MYO15AQ9UKN7 3530 aa5.49□□□□□ -1.53
COL6A3-203ENST00000353578 KRTAP19-4Q3LI73 84 aa5.49□□□□□ -1.53
COL6A3-203ENST00000353578 EYSQ5T1H1 3165 aa5.47□□□□□ -1.53
COL6A3-203ENST00000353578 SZT2Q5T011 3432 aa5.43□□□□□ -1.54
COL6A3-203ENST00000353578 ZFHX4Q86UP3 3567 aa5.4□□□□□ -1.54
COL6A3-203ENST00000353578 WDFY3Q8IZQ1 3526 aa5.37□□□□□ -1.55
COL6A3-203ENST00000353578 DCHS1Q96JQ0 3298 aa5.29□□□□□ -1.56
COL6A3-203ENST00000353578 LOC400499M0QZD8 3231 aa5.29□□□□□ -1.56
COL6A3-203ENST00000353578 SMG1Q96Q15 3661 aaKnown RBP5.28□□□□□ -1.56
COL6A3-203ENST00000353578 TRRAPQ9Y4A5 3859 aa5.26□□□□□ -1.57
COL6A3-203ENST00000353578 LCE3AQ5TA76 89 aa5.26□□□□□ -1.57
COL6A3-203ENST00000353578 CRCT1Q9UGL9 99 aa5.26□□□□□ -1.57
COL6A3-203ENST00000353578 ASPMQ8IZT6 3477 aa5.22□□□□□ -1.57
COL6A3-203ENST00000353578 VPS13CQ709C8 3753 aa5.19□□□□□ -1.58
COL6A3-203ENST00000353578 BSNQ9UPA5 3926 aa5.18□□□□□ -1.58
COL6A3-203ENST00000353578 LAMA5O15230 3695 aa5.18□□□□□ -1.58
COL6A3-203ENST00000353578 DMDP11532 3685 aa5.17□□□□□ -1.58
COL6A3-203ENST00000353578 DNAH3Q8TD57 4116 aa5.16□□□□□ -1.58
COL6A3-203ENST00000353578 RELNP78509 3460 aa5.14□□□□□ -1.59
COL6A3-203ENST00000353578 KRTAP10-5P60370 271 aa5.09□□□□□ -1.59
COL6A3-203ENST00000353578 CSMD1Q96PZ7 3565 aa5.02□□□□□ -1.61
COL6A3-203ENST00000353578 MT1HL1P0DM35 61 aa5.02□□□□□ -1.61
COL6A3-203ENST00000353578 CMYA5Q8N3K9 4069 aa5.01□□□□□ -1.61
COL6A3-203ENST00000353578 KRTAP10-4P60372 401 aaPredicted RBP4.95□□□□□ -1.62
COL6A3-203ENST00000353578 KRTAP8-1Q8IUC2 63 aa4.94□□□□□ -1.62
COL6A3-203ENST00000353578 ZNF469Q96JG9 3925 aaPredicted RBP4.94□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms