RNA–Protein interactions for RNA: ENST00000340748.8

DNMT1-201, Transcript of DNA methyltransferase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene DNMT1, Length 5,408 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DNMT1-201ENST00000340748 FREM2Q5SZK8 3169 aa7.4□□□□□ -1.22
DNMT1-201ENST00000340748 PRAC1Q96KF2 57 aa7.39□□□□□ -1.23
DNMT1-201ENST00000340748 RPL37P61927 97 aaKnown RBP7.39□□□□□ -1.23
DNMT1-201ENST00000340748 DMBT1Q9UGM3 2413 aaPredicted RBP7.36□□□□□ -1.23
DNMT1-201ENST00000340748 ZZEF1O43149 2961 aa7.36□□□□□ -1.23
DNMT1-201ENST00000340748 KRTAP13-1Q8IUC0 172 aa7.36□□□□□ -1.23
DNMT1-201ENST00000340748 NOTCH2NLQ7Z3S9 236 aa7.35□□□□□ -1.23
DNMT1-201ENST00000340748 ROMO1P60602 79 aa7.34□□□□□ -1.23
DNMT1-201ENST00000340748 ADGRG4Q8IZF6 3080 aa7.32□□□□□ -1.24
DNMT1-201ENST00000340748 NIPBLQ6KC79 2804 aaeCLIP7.29□□□□□ -1.24
DNMT1-201ENST00000340748 CFAP47Q6ZTR5 3102 aa7.28□□□□□ -1.24
DNMT1-201ENST00000340748 M0QZ58 72 aa7.28□□□□□ -1.24
DNMT1-201ENST00000340748 KRTAP13-2Q52LG2 175 aa7.26□□□□□ -1.25
DNMT1-201ENST00000340748 WDFY3Q8IZQ1 3526 aa7.26□□□□□ -1.25
DNMT1-201ENST00000340748 SPATA8Q6RVD6 105 aa7.26□□□□□ -1.25
DNMT1-201ENST00000340748 ADM2Q7Z4H4 148 aa7.26□□□□□ -1.25
DNMT1-201ENST00000340748 CELSR2Q9HCU4 2923 aa7.24□□□□□ -1.25
DNMT1-201ENST00000340748 H3BS24 57 aa7.21□□□□□ -1.25
DNMT1-201ENST00000340748 FLG2Q5D862 2391 aaPredicted RBP7.19□□□□□ -1.26
DNMT1-201ENST00000340748 ZANQ9Y493 2812 aa7.17□□□□□ -1.26
DNMT1-201ENST00000340748 TENM2Q9NT68 2774 aa7.15□□□□□ -1.26
DNMT1-201ENST00000340748 NF1P21359 2839 aa7.14□□□□□ -1.27
DNMT1-201ENST00000340748 DCHS2Q6V1P9 2916 aa7.13□□□□□ -1.27
DNMT1-201ENST00000340748 PLAC4Q8WY50 150 aa7.12□□□□□ -1.27
DNMT1-201ENST00000340748 A0A1B0GVY2 172 aa7.11□□□□□ -1.27
DNMT1-201ENST00000340748 A6NN06 94 aa7.1□□□□□ -1.27
DNMT1-201ENST00000340748 MXRA5Q9NR99 2828 aa7.1□□□□□ -1.27
DNMT1-201ENST00000340748 HRNRQ86YZ3 2850 aaPredicted RBP7.09□□□□□ -1.27
DNMT1-201ENST00000340748 A0A0A0MQY5 61 aa7.08□□□□□ -1.28
DNMT1-201ENST00000340748 DMDP11532 3685 aa7.08□□□□□ -1.28
DNMT1-201ENST00000340748 PDZD2O15018 2839 aa7.06□□□□□ -1.28
DNMT1-201ENST00000340748 C20orf166-AS1Q96NR2 134 aa7.06□□□□□ -1.28
DNMT1-201ENST00000340748 A8MUU9 505 aa7.06□□□□□ -1.28
DNMT1-201ENST00000340748 FBN2P35556 2912 aa7.05□□□□□ -1.28
DNMT1-201ENST00000340748 LOC400499M0QZD8 3231 aa7.05□□□□□ -1.28
DNMT1-201ENST00000340748 A8MU10 97 aa7.02□□□□□ -1.29
DNMT1-201ENST00000340748 KRTAP25-1Q3LHN0 102 aa7.01□□□□□ -1.29
DNMT1-201ENST00000340748 NBPF19A0A087WUL8 3843 aa7□□□□□ -1.29
DNMT1-201ENST00000340748 TENM1Q9UKZ4 2725 aa6.98□□□□□ -1.29
DNMT1-201ENST00000340748 ZFHX4Q86UP3 3567 aa6.98□□□□□ -1.29
DNMT1-201ENST00000340748 OTOGQ6ZRI0 2925 aa6.97□□□□□ -1.29
DNMT1-201ENST00000340748 ASPMQ8IZT6 3477 aa6.97□□□□□ -1.29
DNMT1-201ENST00000340748 TENM3Q9P273 2699 aa6.96□□□□□ -1.3
DNMT1-201ENST00000340748 KRTAP1-4P0C5Y4 121 aa6.95□□□□□ -1.3
DNMT1-201ENST00000340748 DCHS1Q96JQ0 3298 aa6.95□□□□□ -1.3
DNMT1-201ENST00000340748 RELNP78509 3460 aa6.93□□□□□ -1.3
DNMT1-201ENST00000340748 TPRXLQ17RH7 258 aa6.92□□□□□ -1.3
DNMT1-201ENST00000340748 XP32Q5T750 250 aa6.89□□□□□ -1.31
DNMT1-201ENST00000340748 PKD1L1Q8TDX9 2849 aa6.87□□□□□ -1.31
DNMT1-201ENST00000340748 ZFHX3Q15911 3703 aa6.85□□□□□ -1.31
DNMT1-201ENST00000340748 MUC3AQ02505 3323 aa6.84□□□□□ -1.31
DNMT1-201ENST00000340748 LAMA5O15230 3695 aa6.82□□□□□ -1.32
DNMT1-201ENST00000340748 SMG1Q96Q15 3661 aaKnown RBP6.81□□□□□ -1.32
DNMT1-201ENST00000340748 KRTAP16-1A8MUX0 517 aa6.79□□□□□ -1.32
DNMT1-201ENST00000340748 KRTAP10-8P60410 259 aa6.78□□□□□ -1.32
DNMT1-201ENST00000340748 CELSR1Q9NYQ6 3014 aa6.77□□□□□ -1.33
DNMT1-201ENST00000340748 TNP1P09430 55 aa6.77□□□□□ -1.33
DNMT1-201ENST00000340748 FBN1P35555 2871 aaKnown RBP6.75□□□□□ -1.33
DNMT1-201ENST00000340748 KRTAP10-10P60014 251 aa6.75□□□□□ -1.33
DNMT1-201ENST00000340748 ANK3Q12955 4377 aaKnown RBP6.72□□□□□ -1.33
DNMT1-201ENST00000340748 KRTAP13-3Q3SY46 172 aa6.72□□□□□ -1.33
DNMT1-201ENST00000340748 CSMD1Q96PZ7 3565 aa6.71□□□□□ -1.33
DNMT1-201ENST00000340748 SPENQ96T58 3664 aaKnown RBP6.71□□□□□ -1.34
DNMT1-201ENST00000340748 FBN3Q75N90 2809 aa6.68□□□□□ -1.34
DNMT1-201ENST00000340748 H0YAA0 97 aa6.66□□□□□ -1.34
DNMT1-201ENST00000340748 PP632Q6XCG6 107 aa6.66□□□□□ -1.34
DNMT1-201ENST00000340748 VWFP04275 2813 aa6.66□□□□□ -1.34
DNMT1-201ENST00000340748 TGP01266 2768 aa6.64□□□□□ -1.35
DNMT1-201ENST00000340748 NDUFAF8A1L188 74 aa6.62□□□□□ -1.35
DNMT1-201ENST00000340748 SVEP1Q4LDE5 3571 aa6.59□□□□□ -1.35
DNMT1-201ENST00000340748 C10orf95Q9H7T3 257 aa6.55□□□□□ -1.36
DNMT1-201ENST00000340748 KRTAP4-5Q9BYR2 181 aa6.52□□□□□ -1.37
DNMT1-201ENST00000340748 P0C880 135 aa6.47□□□□□ -1.37
DNMT1-201ENST00000340748 PRO2289Q9P1D8 64 aa6.47□□□□□ -1.37
DNMT1-201ENST00000340748 CSMD2Q7Z408 3487 aa6.46□□□□□ -1.37
DNMT1-201ENST00000340748 BSNQ9UPA5 3926 aa6.44□□□□□ -1.38
DNMT1-201ENST00000340748 MT1HL1P0DM35 61 aa6.36□□□□□ -1.39
DNMT1-201ENST00000340748 TRRAPQ9Y4A5 3859 aa6.29□□□□□ -1.4
DNMT1-201ENST00000340748 SRRM2Q9UQ35 2752 aaKnown RBP6.28□□□□□ -1.4
DNMT1-201ENST00000340748 ALMS1Q8TCU4 4167 aa6.28□□□□□ -1.4
DNMT1-201ENST00000340748 KRTAP12-2P59991 146 aa6.26□□□□□ -1.41
DNMT1-201ENST00000340748 VPS13CQ709C8 3753 aa6.25□□□□□ -1.41
DNMT1-201ENST00000340748 CUBNO60494 3623 aa6.25□□□□□ -1.41
DNMT1-201ENST00000340748 KRTAP3-1Q9BYR8 98 aa6.23□□□□□ -1.41
DNMT1-201ENST00000340748 HUWE1Q7Z6Z7 4374 aaKnown RBP6.22□□□□□ -1.41
DNMT1-201ENST00000340748 KRTAP13-4Q3LI77 160 aa6.18□□□□□ -1.42
DNMT1-201ENST00000340748 KRTAP12-1P59990 96 aa6.18□□□□□ -1.42
DNMT1-201ENST00000340748 COL7A1Q02388 2944 aa6.16□□□□□ -1.42
DNMT1-201ENST00000340748 KRTAP10-4P60372 401 aaPredicted RBP6.13□□□□□ -1.43
DNMT1-201ENST00000340748 AKAP9Q99996 3911 aa6.1□□□□□ -1.43
DNMT1-201ENST00000340748 DNHD1Q96M86 4753 aa6.08□□□□□ -1.44
DNMT1-201ENST00000340748 MEGF8Q7Z7M0 2845 aa6.06□□□□□ -1.44
DNMT1-201ENST00000340748 KRTAP10-6P60371 365 aaPredicted RBP6.05□□□□□ -1.44
DNMT1-201ENST00000340748 DNAH9Q9NYC9 4486 aa6.03□□□□□ -1.44
DNMT1-201ENST00000340748 KRTAP3-3Q9BYR6 98 aa5.86□□□□□ -1.47
DNMT1-201ENST00000340748 KRTAP3-2Q9BYR7 98 aa5.85□□□□□ -1.47
DNMT1-201ENST00000340748 ZNF469Q96JG9 3925 aaPredicted RBP5.85□□□□□ -1.47
DNMT1-201ENST00000340748 DNAH1Q9P2D7 4330 aa5.84□□□□□ -1.48
DNMT1-201ENST00000340748 DNAH11Q96DT5 4516 aa5.83□□□□□ -1.48
DNMT1-201ENST00000340748 DNAH5Q8TE73 4624 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms