RNA–Protein interactions for RNA: ENST00000339394.6

SDC3-202, Transcript of syndecan 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC3, Length 1,580 nt, Biotype protein coding, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-202ENST00000339394 ACYP1P07311 99 aa12.09□□□□□ -0.47
SDC3-202ENST00000339394 FAM240AA0A1B0GVK7 77 aa12.08□□□□□ -0.48
SDC3-202ENST00000339394 A0A1B0GVX0 72 aa12.08□□□□□ -0.48
SDC3-202ENST00000339394 NDUFB1O75438 58 aa12.07□□□□□ -0.48
SDC3-202ENST00000339394 DSCR10P59022 87 aa12.07□□□□□ -0.48
SDC3-202ENST00000339394 IGKV3D-7A0A0C4DH55 119 aa12.05□□□□□ -0.48
SDC3-202ENST00000339394 LINC00313P59037 77 aa12.05□□□□□ -0.48
SDC3-202ENST00000339394 NOTCH2NLQ7Z3S9 236 aa12.05□□□□□ -0.48
SDC3-202ENST00000339394 PRR15Q8IV56 129 aa12.01□□□□□ -0.49
SDC3-202ENST00000339394 K7EQZ3 153 aa12□□□□□ -0.49
SDC3-202ENST00000339394 C8orf87E5RJ46 101 aa11.99□□□□□ -0.49
SDC3-202ENST00000339394 MUC17Q685J3 4493 aa11.98□□□□□ -0.49
SDC3-202ENST00000339394 J3QR89 54 aa11.98□□□□□ -0.49
SDC3-202ENST00000339394 Q8N9L7 120 aa11.96□□□□□ -0.5
SDC3-202ENST00000339394 KRTAP16-1A8MUX0 517 aa11.95□□□□□ -0.5
SDC3-202ENST00000339394 C8orf17Q9NRJ1 99 aa11.94□□□□□ -0.5
SDC3-202ENST00000339394 RPL37P61927 97 aaKnown RBP11.93□□□□□ -0.5
SDC3-202ENST00000339394 CXCL6P80162 114 aa11.92□□□□□ -0.5
SDC3-202ENST00000339394 C20orf166-AS1Q96NR2 134 aa11.92□□□□□ -0.5
SDC3-202ENST00000339394 Q75L30 129 aa11.91□□□□□ -0.5
SDC3-202ENST00000339394 SEC61BP60468 96 aaKnown RBP11.9□□□□□ -0.5
SDC3-202ENST00000339394 MUC2Q02817 5179 aa11.9□□□□□ -0.5
SDC3-202ENST00000339394 A8MUU9 505 aa11.89□□□□□ -0.51
SDC3-202ENST00000339394 RNF213Q63HN8 5207 aa11.88□□□□□ -0.51
SDC3-202ENST00000339394 MMP24-AS1A0A0U1RRL7 71 aa11.88□□□□□ -0.51
SDC3-202ENST00000339394 PCOTHQ58A44 107 aa11.84□□□□□ -0.51
SDC3-202ENST00000339394 K7ERU9 68 aa11.84□□□□□ -0.51
SDC3-202ENST00000339394 LINC00643Q86TS7 51 aa11.84□□□□□ -0.51
SDC3-202ENST00000339394 ATP5EP2Q5VTU8 51 aa11.83□□□□□ -0.52
SDC3-202ENST00000339394 hDV103S1A0JD37 113 aa11.82□□□□□ -0.52
SDC3-202ENST00000339394 ATP11AUNQ6ZP68 121 aa11.79□□□□□ -0.52
SDC3-202ENST00000339394 Q8N9P0 234 aaPredicted RBP11.79□□□□□ -0.52
SDC3-202ENST00000339394 TMEM254Q8TBM7 123 aa11.79□□□□□ -0.52
SDC3-202ENST00000339394 MRPL34Q9BQ48 92 aaKnown RBP11.78□□□□□ -0.52
SDC3-202ENST00000339394 WFDC13Q8IUB5 93 aa11.77□□□□□ -0.53
SDC3-202ENST00000339394 CASC2Q6XLA1 102 aa11.76□□□□□ -0.53
SDC3-202ENST00000339394 HCG22E2RYF7 251 aa11.75□□□□□ -0.53
SDC3-202ENST00000339394 KRTAP4-1Q9BYQ7 146 aa11.71□□□□□ -0.53
SDC3-202ENST00000339394 HIST1H4AP62805 103 aaKnown RBP11.71□□□□□ -0.54
SDC3-202ENST00000339394 NDUFS5O43920 106 aa11.67□□□□□ -0.54
SDC3-202ENST00000339394 ZCCHC13Q8WW36 166 aaKnown RBP11.63□□□□□ -0.55
SDC3-202ENST00000339394 A0A087WVE0 104 aa11.62□□□□□ -0.55
SDC3-202ENST00000339394 MT-ATP8P03928 68 aa11.55□□□□□ -0.56
SDC3-202ENST00000339394 Q5W150 140 aa11.52□□□□□ -0.57
SDC3-202ENST00000339394 IMUPQ9GZP8 106 aa11.49□□□□□ -0.57
SDC3-202ENST00000339394 TP53AIP1Q9HCN2 124 aa11.49□□□□□ -0.57
SDC3-202ENST00000339394 SPINK7P58062 85 aa11.44□□□□□ -0.58
SDC3-202ENST00000339394 FAT4Q6V0I7 4981 aa11.41□□□□□ -0.58
SDC3-202ENST00000339394 A0A0U1RQV1 116 aa11.38□□□□□ -0.59
SDC3-202ENST00000339394 KRTAP19-2Q3LHN2 52 aa11.35□□□□□ -0.59
SDC3-202ENST00000339394 IGKV2D-30A0A075B6S6 120 aa11.34□□□□□ -0.59
SDC3-202ENST00000339394 IGKV2-30P06310 120 aa11.34□□□□□ -0.59
SDC3-202ENST00000339394 HRES1P13985 223 aa11.34□□□□□ -0.59
SDC3-202ENST00000339394 UQCRQO14949 82 aa11.33□□□□□ -0.6
SDC3-202ENST00000339394 SCGB1A1P11684 91 aa11.33□□□□□ -0.6
SDC3-202ENST00000339394 OCR1Q9BZK8 76 aa11.33□□□□□ -0.6
SDC3-202ENST00000339394 TRAV22A0A0B4J277 110 aa11.31□□□□□ -0.6
SDC3-202ENST00000339394 C7orf65Q6ZTY9 151 aa11.3□□□□□ -0.6
SDC3-202ENST00000339394 FAM236AA0A1B0GUQ0 79 aa11.28□□□□□ -0.6
SDC3-202ENST00000339394 FAM236BA0A1B0GV22 79 aa11.28□□□□□ -0.6
SDC3-202ENST00000339394 MPLKIPQ8TAP9 179 aa11.28□□□□□ -0.6
SDC3-202ENST00000339394 LCE2CQ5TA81 110 aa11.28□□□□□ -0.6
SDC3-202ENST00000339394 COX6B2Q6YFQ2 88 aa11.24□□□□□ -0.61
SDC3-202ENST00000339394 H0Y9P7 68 aa11.23□□□□□ -0.61
SDC3-202ENST00000339394 RBM12B-AS1Q9P1G2 102 aa11.23□□□□□ -0.61
SDC3-202ENST00000339394 ATOX1O00244 68 aa11.2□□□□□ -0.62
SDC3-202ENST00000339394 LOC101927531A0A1B0GV80 90 aa11.17□□□□□ -0.62
SDC3-202ENST00000339394 C5orf47Q569G3 176 aa11.16□□□□□ -0.62
SDC3-202ENST00000339394 CYP4F30PQ9H0H9 118 aa11.16□□□□□ -0.62
SDC3-202ENST00000339394 FAM236DA0A1B0GTK5 79 aa11.16□□□□□ -0.62
SDC3-202ENST00000339394 FAM236CP0DP71 79 aa11.16□□□□□ -0.62
SDC3-202ENST00000339394 MP68P56378 58 aa11.15□□□□□ -0.62
SDC3-202ENST00000339394 SMIM20Q8N5G0 67 aa11.13□□□□□ -0.63
SDC3-202ENST00000339394 C1orf64Q8NEQ6 169 aa11.13□□□□□ -0.63
SDC3-202ENST00000339394 LINC00208Q96KT6 92 aa11.12□□□□□ -0.63
SDC3-202ENST00000339394 FLGP20930 4061 aaPredicted RBP11.11□□□□□ -0.63
SDC3-202ENST00000339394 LCE2AQ5TA79 106 aaPredicted RBP11.11□□□□□ -0.63
SDC3-202ENST00000339394 TRAV7A0A075B6U4 112 aa11.1□□□□□ -0.63
SDC3-202ENST00000339394 MT1HP80294 61 aa11.09□□□□□ -0.63
SDC3-202ENST00000339394 C4orf26Q17RF5 130 aa11.09□□□□□ -0.63
SDC3-202ENST00000339394 H3BPC8 53 aa11.05□□□□□ -0.64
SDC3-202ENST00000339394 KLKP1Q107X0 134 aa10.97□□□□□ -0.65
SDC3-202ENST00000339394 SERP2Q8N6R1 65 aa10.97□□□□□ -0.65
SDC3-202ENST00000339394 KRTAP3-1Q9BYR8 98 aa10.95□□□□□ -0.66
SDC3-202ENST00000339394 H1FX-AS1Q4G0G2 97 aa10.94□□□□□ -0.66
SDC3-202ENST00000339394 M0R2T5 61 aa10.94□□□□□ -0.66
SDC3-202ENST00000339394 SNURFQ9Y675 71 aa10.85□□□□□ -0.67
SDC3-202ENST00000339394 C20orf197Q8N268 126 aa10.84□□□□□ -0.67
SDC3-202ENST00000339394 COX7CP15954 63 aa10.81□□□□□ -0.68
SDC3-202ENST00000339394 KRTAP10-6P60371 365 aaPredicted RBP10.77□□□□□ -0.69
SDC3-202ENST00000339394 ANAPC13Q9BS18 74 aa10.77□□□□□ -0.69
SDC3-202ENST00000339394 LORP23490 312 aaPredicted RBP10.75□□□□□ -0.69
SDC3-202ENST00000339394 A8MUN3 132 aa10.73□□□□□ -0.69
SDC3-202ENST00000339394 S4R3F8 94 aa10.72□□□□□ -0.69
SDC3-202ENST00000339394 LCA10Q71F78 164 aa10.68□□□□□ -0.7
SDC3-202ENST00000339394 DMAC1Q96GE9 116 aa10.66□□□□□ -0.7
SDC3-202ENST00000339394 KRTAP9-8Q9BYQ0 159 aa10.6□□□□□ -0.71
SDC3-202ENST00000339394 KRTAP3-3Q9BYR6 98 aa10.6□□□□□ -0.71
SDC3-202ENST00000339394 SPANXA2-OT1Q8N9U9 137 aa10.58□□□□□ -0.72
SDC3-202ENST00000339394 CYSTM1Q9H1C7 97 aa10.58□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 61 ms