RNA–Protein interactions for RNA: ENST00000309328.7

SSSCA1-201, Transcript of Sjogren syndrome/scleroderma autoantigen 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SSSCA1, Length 698 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSSCA1-201ENST00000309328 LINC00313P59037 77 aa9.73□□□□□ -0.85
SSSCA1-201ENST00000309328 IGHV6-1A0A0B4J1U7 121 aa9.71□□□□□ -0.86
SSSCA1-201ENST00000309328 Q6ZVQ6 151 aa9.71□□□□□ -0.86
SSSCA1-201ENST00000309328 BPY2O14599 106 aa9.7□□□□□ -0.86
SSSCA1-201ENST00000309328 ACYP1P07311 99 aa9.7□□□□□ -0.86
SSSCA1-201ENST00000309328 RPL37P61927 97 aaKnown RBP9.7□□□□□ -0.86
SSSCA1-201ENST00000309328 Q75L30 129 aa9.7□□□□□ -0.86
SSSCA1-201ENST00000309328 LINC00846Q9NV44 126 aa9.68□□□□□ -0.86
SSSCA1-201ENST00000309328 MUC17Q685J3 4493 aa9.68□□□□□ -0.86
SSSCA1-201ENST00000309328 FAM240AA0A1B0GVK7 77 aa9.67□□□□□ -0.86
SSSCA1-201ENST00000309328 DSCR10P59022 87 aa9.67□□□□□ -0.86
SSSCA1-201ENST00000309328 PRR15Q8IV56 129 aa9.66□□□□□ -0.86
SSSCA1-201ENST00000309328 C20orf166-AS1Q96NR2 134 aa9.66□□□□□ -0.86
SSSCA1-201ENST00000309328 IGKV3D-7A0A0C4DH55 119 aa9.64□□□□□ -0.87
SSSCA1-201ENST00000309328 A8MUU9 505 aa9.63□□□□□ -0.87
SSSCA1-201ENST00000309328 ATP11AUNQ6ZP68 121 aa9.62□□□□□ -0.87
SSSCA1-201ENST00000309328 C8orf17Q9NRJ1 99 aa9.6□□□□□ -0.87
SSSCA1-201ENST00000309328 KRTAP16-1A8MUX0 517 aa9.59□□□□□ -0.87
SSSCA1-201ENST00000309328 J3QR89 54 aa9.59□□□□□ -0.87
SSSCA1-201ENST00000309328 PCOTHQ58A44 107 aa9.59□□□□□ -0.87
SSSCA1-201ENST00000309328 NOTCH2NLQ7Z3S9 236 aa9.58□□□□□ -0.88
SSSCA1-201ENST00000309328 K7EQZ3 153 aa9.57□□□□□ -0.88
SSSCA1-201ENST00000309328 CXCL6P80162 114 aa9.57□□□□□ -0.88
SSSCA1-201ENST00000309328 RNF213Q63HN8 5207 aa9.55□□□□□ -0.88
SSSCA1-201ENST00000309328 A0A0U1RQV1 116 aa9.55□□□□□ -0.88
SSSCA1-201ENST00000309328 ATP5EP2Q5VTU8 51 aa9.53□□□□□ -0.88
SSSCA1-201ENST00000309328 TMEM254Q8TBM7 123 aa9.53□□□□□ -0.88
SSSCA1-201ENST00000309328 Q8N9P0 234 aaPredicted RBP9.52□□□□□ -0.89
SSSCA1-201ENST00000309328 MMP24-AS1A0A0U1RRL7 71 aa9.51□□□□□ -0.89
SSSCA1-201ENST00000309328 hDV103S1A0JD37 113 aa9.51□□□□□ -0.89
SSSCA1-201ENST00000309328 MRPL34Q9BQ48 92 aaKnown RBP9.49□□□□□ -0.89
SSSCA1-201ENST00000309328 MUC2Q02817 5179 aa9.49□□□□□ -0.89
SSSCA1-201ENST00000309328 Q8N9L7 120 aa9.46□□□□□ -0.9
SSSCA1-201ENST00000309328 CASC2Q6XLA1 102 aa9.44□□□□□ -0.9
SSSCA1-201ENST00000309328 LINC00643Q86TS7 51 aa9.44□□□□□ -0.9
SSSCA1-201ENST00000309328 HCG22E2RYF7 251 aa9.43□□□□□ -0.9
SSSCA1-201ENST00000309328 ZCCHC13Q8WW36 166 aaKnown RBP9.41□□□□□ -0.9
SSSCA1-201ENST00000309328 KRTAP4-1Q9BYQ7 146 aa9.4□□□□□ -0.9
SSSCA1-201ENST00000309328 WFDC13Q8IUB5 93 aa9.39□□□□□ -0.91
SSSCA1-201ENST00000309328 K7ERU9 68 aa9.38□□□□□ -0.91
SSSCA1-201ENST00000309328 NDUFS5O43920 106 aa9.38□□□□□ -0.91
SSSCA1-201ENST00000309328 HIST1H4AP62805 103 aaKnown RBP9.31□□□□□ -0.92
SSSCA1-201ENST00000309328 TP53AIP1Q9HCN2 124 aa9.3□□□□□ -0.92
SSSCA1-201ENST00000309328 FAT4Q6V0I7 4981 aa9.23□□□□□ -0.93
SSSCA1-201ENST00000309328 SPINK7P58062 85 aa9.22□□□□□ -0.93
SSSCA1-201ENST00000309328 COX6B2Q6YFQ2 88 aa9.21□□□□□ -0.94
SSSCA1-201ENST00000309328 RBM12B-AS1Q9P1G2 102 aa9.2□□□□□ -0.94
SSSCA1-201ENST00000309328 IMUPQ9GZP8 106 aa9.18□□□□□ -0.94
SSSCA1-201ENST00000309328 KRTAP19-2Q3LHN2 52 aa9.17□□□□□ -0.94
SSSCA1-201ENST00000309328 Q5W150 140 aa9.17□□□□□ -0.94
SSSCA1-201ENST00000309328 C7orf65Q6ZTY9 151 aa9.17□□□□□ -0.94
SSSCA1-201ENST00000309328 A0A087WVE0 104 aa9.15□□□□□ -0.94
SSSCA1-201ENST00000309328 HRES1P13985 223 aa9.15□□□□□ -0.94
SSSCA1-201ENST00000309328 MPLKIPQ8TAP9 179 aa9.13□□□□□ -0.95
SSSCA1-201ENST00000309328 UQCRQO14949 82 aa9.12□□□□□ -0.95
SSSCA1-201ENST00000309328 IGKV2D-30A0A075B6S6 120 aa9.11□□□□□ -0.95
SSSCA1-201ENST00000309328 IGKV2-30P06310 120 aa9.11□□□□□ -0.95
SSSCA1-201ENST00000309328 LCE2CQ5TA81 110 aa9.11□□□□□ -0.95
SSSCA1-201ENST00000309328 TRAV22A0A0B4J277 110 aa9.09□□□□□ -0.95
SSSCA1-201ENST00000309328 FAM236DA0A1B0GTK5 79 aa9.09□□□□□ -0.95
SSSCA1-201ENST00000309328 FAM236CP0DP71 79 aa9.09□□□□□ -0.95
SSSCA1-201ENST00000309328 LCE2AQ5TA79 106 aaPredicted RBP9.09□□□□□ -0.95
SSSCA1-201ENST00000309328 ATOX1O00244 68 aa9.07□□□□□ -0.96
SSSCA1-201ENST00000309328 MT-ATP8P03928 68 aa9.05□□□□□ -0.96
SSSCA1-201ENST00000309328 SCGB1A1P11684 91 aa9.04□□□□□ -0.96
SSSCA1-201ENST00000309328 FLGP20930 4061 aaPredicted RBP9.03□□□□□ -0.96
SSSCA1-201ENST00000309328 LOC101927531A0A1B0GV80 90 aa9.02□□□□□ -0.97
SSSCA1-201ENST00000309328 MT1HP80294 61 aa9.01□□□□□ -0.97
SSSCA1-201ENST00000309328 OCR1Q9BZK8 76 aa9.01□□□□□ -0.97
SSSCA1-201ENST00000309328 H0Y9P7 68 aa8.98□□□□□ -0.97
SSSCA1-201ENST00000309328 MP68P56378 58 aa8.98□□□□□ -0.97
SSSCA1-201ENST00000309328 C5orf47Q569G3 176 aa8.97□□□□□ -0.97
SSSCA1-201ENST00000309328 SMIM20Q8N5G0 67 aa8.97□□□□□ -0.97
SSSCA1-201ENST00000309328 M0R2T5 61 aa8.95□□□□□ -0.98
SSSCA1-201ENST00000309328 CYP4F30PQ9H0H9 118 aa8.95□□□□□ -0.98
SSSCA1-201ENST00000309328 H3BPC8 53 aa8.93□□□□□ -0.98
SSSCA1-201ENST00000309328 FAM236AA0A1B0GUQ0 79 aa8.92□□□□□ -0.98
SSSCA1-201ENST00000309328 FAM236BA0A1B0GV22 79 aa8.92□□□□□ -0.98
SSSCA1-201ENST00000309328 C1orf64Q8NEQ6 169 aa8.9□□□□□ -0.98
SSSCA1-201ENST00000309328 H1FX-AS1Q4G0G2 97 aa8.89□□□□□ -0.99
SSSCA1-201ENST00000309328 C4orf26Q17RF5 130 aa8.88□□□□□ -0.99
SSSCA1-201ENST00000309328 LINC00208Q96KT6 92 aa8.87□□□□□ -0.99
SSSCA1-201ENST00000309328 TRAV7A0A075B6U4 112 aa8.85□□□□□ -0.99
SSSCA1-201ENST00000309328 KRTAP9-2Q9BYQ4 174 aa8.84□□□□□ -0.99
SSSCA1-201ENST00000309328 KRTAP10-6P60371 365 aaPredicted RBP8.78□□□□□ -1
SSSCA1-201ENST00000309328 LORP23490 312 aaPredicted RBP8.76□□□□□ -1.01
SSSCA1-201ENST00000309328 A8MUN3 132 aa8.74□□□□□ -1.01
SSSCA1-201ENST00000309328 SERP2Q8N6R1 65 aa8.72□□□□□ -1.01
SSSCA1-201ENST00000309328 KRTAP3-1Q9BYR8 98 aa8.71□□□□□ -1.02
SSSCA1-201ENST00000309328 KLKP1Q107X0 134 aa8.7□□□□□ -1.02
SSSCA1-201ENST00000309328 S4R3F8 94 aa8.68□□□□□ -1.02
SSSCA1-201ENST00000309328 CSAG1Q6PB30 78 aa8.59□□□□□ -1.03
SSSCA1-201ENST00000309328 KRTAP9-8Q9BYQ0 159 aa8.59□□□□□ -1.03
SSSCA1-201ENST00000309328 LCA10Q71F78 164 aa8.58□□□□□ -1.04
SSSCA1-201ENST00000309328 C20orf197Q8N268 126 aa8.57□□□□□ -1.04
SSSCA1-201ENST00000309328 KRTAP9-6A0A140TA67 174 aa8.56□□□□□ -1.04
SSSCA1-201ENST00000309328 DMAC1Q96GE9 116 aa8.56□□□□□ -1.04
SSSCA1-201ENST00000309328 COX7CP15954 63 aa8.55□□□□□ -1.04
SSSCA1-201ENST00000309328 LCE2DQ5TA82 110 aaPredicted RBP8.55□□□□□ -1.04
SSSCA1-201ENST00000309328 SNURFQ9Y675 71 aa8.54□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 48.6 ms