RNA–Protein interactions for RNA: ENST00000303296.8

HIPK3-201, Transcript of homeodomain interacting protein kinase 3, humanhuman

TSL 5 BASIC

Gene HIPK3, Length 7,408 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HIPK3-201ENST00000303296 DMXL2Q8TDJ6 3036 aa7.45□□□□□ -1.22
HIPK3-201ENST00000303296 ASH1LQ9NR48 2969 aaKnown RBP7.44□□□□□ -1.22
HIPK3-201ENST00000303296 MAP1AP78559 2803 aaPredicted RBP7.43□□□□□ -1.22
HIPK3-201ENST00000303296 SPEGQ15772 3267 aa7.42□□□□□ -1.22
HIPK3-201ENST00000303296 COL12A1Q99715 3063 aa7.42□□□□□ -1.22
HIPK3-201ENST00000303296 UTP20O75691 2785 aaKnown RBP7.42□□□□□ -1.22
HIPK3-201ENST00000303296 KRTAP13-1Q8IUC0 172 aa7.41□□□□□ -1.22
HIPK3-201ENST00000303296 BRCA2P51587 3418 aa7.41□□□□□ -1.22
HIPK3-201ENST00000303296 DNAH14Q0VDD8 3507 aa7.38□□□□□ -1.23
HIPK3-201ENST00000303296 KRTAP12-2P59991 146 aa7.38□□□□□ -1.23
HIPK3-201ENST00000303296 VCANP13611 3396 aa7.36□□□□□ -1.23
HIPK3-201ENST00000303296 LAMA1P25391 3075 aa7.34□□□□□ -1.23
HIPK3-201ENST00000303296 COL6A3P12111 3177 aa7.33□□□□□ -1.24
HIPK3-201ENST00000303296 ATMQ13315 3056 aa7.29□□□□□ -1.24
HIPK3-201ENST00000303296 TPRXLQ17RH7 258 aa7.27□□□□□ -1.25
HIPK3-201ENST00000303296 LRBAP50851 2863 aa7.26□□□□□ -1.25
HIPK3-201ENST00000303296 CHD7Q9P2D1 2997 aa7.26□□□□□ -1.25
HIPK3-201ENST00000303296 ITPR1Q14643 2758 aa7.25□□□□□ -1.25
HIPK3-201ENST00000303296 CRCT1Q9UGL9 99 aa7.23□□□□□ -1.25
HIPK3-201ENST00000303296 CDH23Q9H251 3354 aa7.22□□□□□ -1.25
HIPK3-201ENST00000303296 KRTAP15-1Q3LI76 137 aa7.21□□□□□ -1.25
HIPK3-201ENST00000303296 FRYLO94915 3013 aa7.21□□□□□ -1.26
HIPK3-201ENST00000303296 HIVEP1P15822 2718 aa7.21□□□□□ -1.26
HIPK3-201ENST00000303296 CHD9Q3L8U1 2897 aa7.18□□□□□ -1.26
HIPK3-201ENST00000303296 SZT2Q5T011 3432 aa7.13□□□□□ -1.27
HIPK3-201ENST00000303296 KRTAP1-4P0C5Y4 121 aa7.13□□□□□ -1.27
HIPK3-201ENST00000303296 BOD1L1Q8NFC6 3051 aa7.12□□□□□ -1.27
HIPK3-201ENST00000303296 ZZEF1O43149 2961 aa7.12□□□□□ -1.27
HIPK3-201ENST00000303296 ZFHX4Q86UP3 3567 aa7.1□□□□□ -1.27
HIPK3-201ENST00000303296 TENM1Q9UKZ4 2725 aa7.08□□□□□ -1.28
HIPK3-201ENST00000303296 KRTAP13-3Q3SY46 172 aa7.07□□□□□ -1.28
HIPK3-201ENST00000303296 TENM3Q9P273 2699 aa7.07□□□□□ -1.28
HIPK3-201ENST00000303296 TACC2O95359 2948 aa7.04□□□□□ -1.28
HIPK3-201ENST00000303296 KRTAP13-4Q3LI77 160 aa7.04□□□□□ -1.28
HIPK3-201ENST00000303296 ADGRG4Q8IZF6 3080 aa7.02□□□□□ -1.29
HIPK3-201ENST00000303296 CELSR1Q9NYQ6 3014 aa7□□□□□ -1.29
HIPK3-201ENST00000303296 TNRC18O15417 2968 aaPredicted RBP7□□□□□ -1.29
HIPK3-201ENST00000303296 CELSR2Q9HCU4 2923 aa6.96□□□□□ -1.29
HIPK3-201ENST00000303296 ASPMQ8IZT6 3477 aa6.96□□□□□ -1.29
HIPK3-201ENST00000303296 TGP01266 2768 aa6.95□□□□□ -1.3
HIPK3-201ENST00000303296 USP34Q70CQ2 3546 aa6.94□□□□□ -1.3
HIPK3-201ENST00000303296 LOC400499M0QZD8 3231 aa6.94□□□□□ -1.3
HIPK3-201ENST00000303296 FLNCQ14315 2725 aa6.92□□□□□ -1.3
HIPK3-201ENST00000303296 PDZD2O15018 2839 aa6.9□□□□□ -1.3
HIPK3-201ENST00000303296 NF1P21359 2839 aa6.88□□□□□ -1.31
HIPK3-201ENST00000303296 DMXL1Q9Y485 3027 aa6.87□□□□□ -1.31
HIPK3-201ENST00000303296 KRTAP12-1P59990 96 aa6.87□□□□□ -1.31
HIPK3-201ENST00000303296 KRTAP21-3Q3LHN1 58 aa6.87□□□□□ -1.31
HIPK3-201ENST00000303296 DCHS1Q96JQ0 3298 aa6.82□□□□□ -1.32
HIPK3-201ENST00000303296 MYO15AQ9UKN7 3530 aa6.8□□□□□ -1.32
HIPK3-201ENST00000303296 EYSQ5T1H1 3165 aa6.77□□□□□ -1.33
HIPK3-201ENST00000303296 TENM4Q6N022 2769 aa6.76□□□□□ -1.33
HIPK3-201ENST00000303296 NIPBLQ6KC79 2804 aaeCLIP6.76□□□□□ -1.33
HIPK3-201ENST00000303296 SPTBN5Q9NRC6 3674 aaKnown RBP6.76□□□□□ -1.33
HIPK3-201ENST00000303296 DCHS2Q6V1P9 2916 aa6.75□□□□□ -1.33
HIPK3-201ENST00000303296 NBPF19A0A087WUL8 3843 aa6.74□□□□□ -1.33
HIPK3-201ENST00000303296 INE1O15225 51 aa6.71□□□□□ -1.34
HIPK3-201ENST00000303296 NBEAQ8NFP9 2946 aa6.67□□□□□ -1.34
HIPK3-201ENST00000303296 ZANQ9Y493 2812 aa6.67□□□□□ -1.34
HIPK3-201ENST00000303296 WDFY3Q8IZQ1 3526 aa6.66□□□□□ -1.34
HIPK3-201ENST00000303296 VWFP04275 2813 aa6.65□□□□□ -1.34
HIPK3-201ENST00000303296 TENM2Q9NT68 2774 aa6.64□□□□□ -1.35
HIPK3-201ENST00000303296 PKD1L1Q8TDX9 2849 aa6.63□□□□□ -1.35
HIPK3-201ENST00000303296 KRTAP10-12P60413 245 aa6.59□□□□□ -1.35
HIPK3-201ENST00000303296 KRTAP10-6P60371 365 aaPredicted RBP6.55□□□□□ -1.36
HIPK3-201ENST00000303296 KRTAP10-5P60370 271 aa6.53□□□□□ -1.36
HIPK3-201ENST00000303296 LAMA5O15230 3695 aa6.52□□□□□ -1.37
HIPK3-201ENST00000303296 CSMD1Q96PZ7 3565 aa6.48□□□□□ -1.37
HIPK3-201ENST00000303296 FBN2P35556 2912 aa6.44□□□□□ -1.38
HIPK3-201ENST00000303296 SRRM2Q9UQ35 2752 aaKnown RBP6.44□□□□□ -1.38
HIPK3-201ENST00000303296 KRTAP3-1Q9BYR8 98 aa6.41□□□□□ -1.38
HIPK3-201ENST00000303296 RELNP78509 3460 aa6.38□□□□□ -1.39
HIPK3-201ENST00000303296 SPENQ96T58 3664 aaKnown RBP6.38□□□□□ -1.39
HIPK3-201ENST00000303296 KRTAP12-3P60328 96 aa6.34□□□□□ -1.39
HIPK3-201ENST00000303296 MEGF8Q7Z7M0 2845 aa6.3□□□□□ -1.4
HIPK3-201ENST00000303296 COL7A1Q02388 2944 aa6.29□□□□□ -1.4
HIPK3-201ENST00000303296 LORP23490 312 aaPredicted RBP6.27□□□□□ -1.4
HIPK3-201ENST00000303296 LCE3AQ5TA76 89 aa6.26□□□□□ -1.41
HIPK3-201ENST00000303296 SMG1Q96Q15 3661 aaKnown RBP6.25□□□□□ -1.41
HIPK3-201ENST00000303296 ZFHX3Q15911 3703 aa6.23□□□□□ -1.41
HIPK3-201ENST00000303296 MXRA5Q9NR99 2828 aa6.22□□□□□ -1.41
HIPK3-201ENST00000303296 KRTAP8-1Q8IUC2 63 aa6.2□□□□□ -1.42
HIPK3-201ENST00000303296 CUBNO60494 3623 aa6.17□□□□□ -1.42
HIPK3-201ENST00000303296 MUC3AQ02505 3323 aa6.14□□□□□ -1.43
HIPK3-201ENST00000303296 DMDP11532 3685 aa6.03□□□□□ -1.44
HIPK3-201ENST00000303296 HRNRQ86YZ3 2850 aaPredicted RBP6.02□□□□□ -1.45
HIPK3-201ENST00000303296 FBN3Q75N90 2809 aa6.02□□□□□ -1.45
HIPK3-201ENST00000303296 KRTAP10-7P60409 375 aaPredicted RBP5.95□□□□□ -1.46
HIPK3-201ENST00000303296 OTOGQ6ZRI0 2925 aa5.95□□□□□ -1.46
HIPK3-201ENST00000303296 KRTAP3-3Q9BYR6 98 aa5.94□□□□□ -1.46
HIPK3-201ENST00000303296 KRTAP3-2Q9BYR7 98 aa5.94□□□□□ -1.46
HIPK3-201ENST00000303296 CSMD3Q7Z407 3707 aa5.93□□□□□ -1.46
HIPK3-201ENST00000303296 SVEP1Q4LDE5 3571 aa5.89□□□□□ -1.47
HIPK3-201ENST00000303296 CSMD2Q7Z408 3487 aa5.88□□□□□ -1.47
HIPK3-201ENST00000303296 KRTAP4-5Q9BYR2 181 aa5.86□□□□□ -1.47
HIPK3-201ENST00000303296 MT1HL1P0DM35 61 aa5.85□□□□□ -1.47
HIPK3-201ENST00000303296 KRTAP23-1A1A580 65 aa5.79□□□□□ -1.48
HIPK3-201ENST00000303296 TRRAPQ9Y4A5 3859 aa5.76□□□□□ -1.49
HIPK3-201ENST00000303296 SPRR2FQ96RM1 72 aa5.75□□□□□ -1.49
HIPK3-201ENST00000303296 FBN1P35555 2871 aaKnown RBP5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 14.5 ms