RNA–Protein interactions for RNA: ENST00000293880.9

SSRP1-202, Transcript of structure specific recognition protein 1, humanhuman

TSL 2

Gene SSRP1, Length 6,296 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSRP1-202ENST00000293880 DMXL2Q8TDJ6 3036 aa8.97□□□□□ -0.97
SSRP1-202ENST00000293880 FLNCQ14315 2725 aa8.94□□□□□ -0.98
SSRP1-202ENST00000293880 STAB2Q8WWQ8 2551 aa8.94□□□□□ -0.98
SSRP1-202ENST00000293880 NSD1Q96L73 2696 aaPredicted RBP8.93□□□□□ -0.98
SSRP1-202ENST00000293880 TNRC18O15417 2968 aaPredicted RBP8.92□□□□□ -0.98
SSRP1-202ENST00000293880 TNP1P09430 55 aa8.9□□□□□ -0.98
SSRP1-202ENST00000293880 Q6ZRN7 208 aaPredicted RBP8.89□□□□□ -0.99
SSRP1-202ENST00000293880 CFAP47Q6ZTR5 3102 aa8.89□□□□□ -0.99
SSRP1-202ENST00000293880 KALRNO60229 2985 aa8.88□□□□□ -0.99
SSRP1-202ENST00000293880 SPTBN5Q9NRC6 3674 aaKnown RBP8.88□□□□□ -0.99
SSRP1-202ENST00000293880 LRBAP50851 2863 aa8.86□□□□□ -0.99
SSRP1-202ENST00000293880 HIVEP1P15822 2718 aa8.86□□□□□ -0.99
SSRP1-202ENST00000293880 UTP20O75691 2785 aaKnown RBP8.85□□□□□ -0.99
SSRP1-202ENST00000293880 EYSQ5T1H1 3165 aa8.83□□□□□ -1
SSRP1-202ENST00000293880 KRTAP21-3Q3LHN1 58 aa8.83□□□□□ -1
SSRP1-202ENST00000293880 ADGRG4Q8IZF6 3080 aa8.82□□□□□ -1
SSRP1-202ENST00000293880 KRTAP13-1Q8IUC0 172 aa8.82□□□□□ -1
SSRP1-202ENST00000293880 A0A1B0GVY2 172 aa8.81□□□□□ -1
SSRP1-202ENST00000293880 RPS29P62273 56 aaKnown RBP8.81□□□□□ -1
SSRP1-202ENST00000293880 KRTAP10-8P60410 259 aa8.81□□□□□ -1
SSRP1-202ENST00000293880 SPEGQ15772 3267 aa8.81□□□□□ -1
SSRP1-202ENST00000293880 TENM4Q6N022 2769 aa8.78□□□□□ -1
SSRP1-202ENST00000293880 USP34Q70CQ2 3546 aa8.78□□□□□ -1
SSRP1-202ENST00000293880 NBEAQ8NFP9 2946 aa8.75□□□□□ -1.01
SSRP1-202ENST00000293880 DMXL1Q9Y485 3027 aa8.73□□□□□ -1.01
SSRP1-202ENST00000293880 P0C880 135 aa8.69□□□□□ -1.02
SSRP1-202ENST00000293880 ZZEF1O43149 2961 aa8.69□□□□□ -1.02
SSRP1-202ENST00000293880 ASH1LQ9NR48 2969 aaKnown RBP8.67□□□□□ -1.02
SSRP1-202ENST00000293880 KMT2BQ9UMN6 2715 aaPredicted RBP8.67□□□□□ -1.02
SSRP1-202ENST00000293880 APCP25054 2843 aa8.67□□□□□ -1.02
SSRP1-202ENST00000293880 H0YAA0 97 aa8.66□□□□□ -1.02
SSRP1-202ENST00000293880 CELSR2Q9HCU4 2923 aa8.58□□□□□ -1.04
SSRP1-202ENST00000293880 PP632Q6XCG6 107 aa8.53□□□□□ -1.04
SSRP1-202ENST00000293880 XP32Q5T750 250 aa8.51□□□□□ -1.05
SSRP1-202ENST00000293880 DCHS2Q6V1P9 2916 aa8.48□□□□□ -1.05
SSRP1-202ENST00000293880 MYO15AQ9UKN7 3530 aa8.47□□□□□ -1.05
SSRP1-202ENST00000293880 LOC400499M0QZD8 3231 aa8.47□□□□□ -1.05
SSRP1-202ENST00000293880 ZANQ9Y493 2812 aa8.44□□□□□ -1.06
SSRP1-202ENST00000293880 NIPBLQ6KC79 2804 aaeCLIP8.41□□□□□ -1.06
SSRP1-202ENST00000293880 KRTAP1-4P0C5Y4 121 aa8.4□□□□□ -1.07
SSRP1-202ENST00000293880 KRTAP10-10P60014 251 aa8.34□□□□□ -1.07
SSRP1-202ENST00000293880 NF1P21359 2839 aa8.32□□□□□ -1.08
SSRP1-202ENST00000293880 HRNRQ86YZ3 2850 aaPredicted RBP8.28□□□□□ -1.08
SSRP1-202ENST00000293880 RELNP78509 3460 aa8.27□□□□□ -1.09
SSRP1-202ENST00000293880 FBN2P35556 2912 aa8.25□□□□□ -1.09
SSRP1-202ENST00000293880 TENM2Q9NT68 2774 aa8.25□□□□□ -1.09
SSRP1-202ENST00000293880 TENM1Q9UKZ4 2725 aa8.24□□□□□ -1.09
SSRP1-202ENST00000293880 DCHS1Q96JQ0 3298 aa8.2□□□□□ -1.1
SSRP1-202ENST00000293880 ASPMQ8IZT6 3477 aa8.2□□□□□ -1.1
SSRP1-202ENST00000293880 KRTAP12-2P59991 146 aa8.2□□□□□ -1.1
SSRP1-202ENST00000293880 WDFY3Q8IZQ1 3526 aa8.18□□□□□ -1.1
SSRP1-202ENST00000293880 NBPF19A0A087WUL8 3843 aa8.15□□□□□ -1.11
SSRP1-202ENST00000293880 CELSR1Q9NYQ6 3014 aa8.12□□□□□ -1.11
SSRP1-202ENST00000293880 TENM3Q9P273 2699 aa8.12□□□□□ -1.11
SSRP1-202ENST00000293880 TPRXLQ17RH7 258 aa8.11□□□□□ -1.11
SSRP1-202ENST00000293880 PKD1L1Q8TDX9 2849 aa8.1□□□□□ -1.11
SSRP1-202ENST00000293880 LAMA5O15230 3695 aa8.1□□□□□ -1.11
SSRP1-202ENST00000293880 PRO2289Q9P1D8 64 aa8.1□□□□□ -1.11
SSRP1-202ENST00000293880 KRTAP13-3Q3SY46 172 aa8.08□□□□□ -1.12
SSRP1-202ENST00000293880 MXRA5Q9NR99 2828 aa8.05□□□□□ -1.12
SSRP1-202ENST00000293880 ZFHX4Q86UP3 3567 aa7.97□□□□□ -1.13
SSRP1-202ENST00000293880 VWFP04275 2813 aa7.96□□□□□ -1.14
SSRP1-202ENST00000293880 ZFHX3Q15911 3703 aa7.94□□□□□ -1.14
SSRP1-202ENST00000293880 DMDP11532 3685 aa7.92□□□□□ -1.14
SSRP1-202ENST00000293880 MUC3AQ02505 3323 aa7.85□□□□□ -1.15
SSRP1-202ENST00000293880 KRTAP12-1P59990 96 aa7.85□□□□□ -1.15
SSRP1-202ENST00000293880 KRTAP13-4Q3LI77 160 aa7.85□□□□□ -1.15
SSRP1-202ENST00000293880 PDZD2O15018 2839 aa7.85□□□□□ -1.15
SSRP1-202ENST00000293880 KRTAP15-1Q3LI76 137 aa7.79□□□□□ -1.16
SSRP1-202ENST00000293880 CSMD1Q96PZ7 3565 aa7.78□□□□□ -1.16
SSRP1-202ENST00000293880 FBN1P35555 2871 aaKnown RBP7.73□□□□□ -1.17
SSRP1-202ENST00000293880 OTOGQ6ZRI0 2925 aa7.73□□□□□ -1.17
SSRP1-202ENST00000293880 TGP01266 2768 aa7.72□□□□□ -1.17
SSRP1-202ENST00000293880 KRTAP3-1Q9BYR8 98 aa7.71□□□□□ -1.17
SSRP1-202ENST00000293880 SMG1Q96Q15 3661 aaKnown RBP7.68□□□□□ -1.18
SSRP1-202ENST00000293880 CSMD2Q7Z408 3487 aa7.67□□□□□ -1.18
SSRP1-202ENST00000293880 CRCT1Q9UGL9 99 aa7.63□□□□□ -1.19
SSRP1-202ENST00000293880 SRRM2Q9UQ35 2752 aaKnown RBP7.55□□□□□ -1.2
SSRP1-202ENST00000293880 INE1O15225 51 aa7.54□□□□□ -1.2
SSRP1-202ENST00000293880 ANK3Q12955 4377 aaKnown RBP7.53□□□□□ -1.2
SSRP1-202ENST00000293880 SVEP1Q4LDE5 3571 aa7.52□□□□□ -1.21
SSRP1-202ENST00000293880 KRTAP10-6P60371 365 aaPredicted RBP7.46□□□□□ -1.21
SSRP1-202ENST00000293880 CUBNO60494 3623 aa7.44□□□□□ -1.22
SSRP1-202ENST00000293880 SPENQ96T58 3664 aaKnown RBP7.44□□□□□ -1.22
SSRP1-202ENST00000293880 TRRAPQ9Y4A5 3859 aa7.38□□□□□ -1.23
SSRP1-202ENST00000293880 KRTAP4-5Q9BYR2 181 aa7.31□□□□□ -1.24
SSRP1-202ENST00000293880 FBN3Q75N90 2809 aa7.28□□□□□ -1.24
SSRP1-202ENST00000293880 KRTAP10-12P60413 245 aa7.23□□□□□ -1.25
SSRP1-202ENST00000293880 BSNQ9UPA5 3926 aa7.21□□□□□ -1.25
SSRP1-202ENST00000293880 COL7A1Q02388 2944 aa7.21□□□□□ -1.26
SSRP1-202ENST00000293880 MT1HL1P0DM35 61 aa7.21□□□□□ -1.26
SSRP1-202ENST00000293880 KRTAP3-3Q9BYR6 98 aa7.17□□□□□ -1.26
SSRP1-202ENST00000293880 KRTAP3-2Q9BYR7 98 aa7.16□□□□□ -1.26
SSRP1-202ENST00000293880 HUWE1Q7Z6Z7 4374 aaKnown RBP7.14□□□□□ -1.27
SSRP1-202ENST00000293880 MEGF8Q7Z7M0 2845 aa7.14□□□□□ -1.27
SSRP1-202ENST00000293880 LCE3AQ5TA76 89 aa7.1□□□□□ -1.27
SSRP1-202ENST00000293880 KRTAP10-5P60370 271 aa7.04□□□□□ -1.28
SSRP1-202ENST00000293880 KRTAP12-3P60328 96 aa7.01□□□□□ -1.29
SSRP1-202ENST00000293880 VPS13CQ709C8 3753 aa6.99□□□□□ -1.29
SSRP1-202ENST00000293880 ALMS1Q8TCU4 4167 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 62.5 ms