RNA–Protein interactions for RNA: ENST00000274030.10

USP53-201, Transcript of ubiquitin specific peptidase 53, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP53, Length 5,936 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-201ENST00000274030 ROMO1P60602 79 aa6.64□□□□□ -1.35
USP53-201ENST00000274030 APCP25054 2843 aa6.63□□□□□ -1.35
USP53-201ENST00000274030 USP34Q70CQ2 3546 aa6.62□□□□□ -1.35
USP53-201ENST00000274030 CELSR2Q9HCU4 2923 aa6.6□□□□□ -1.35
USP53-201ENST00000274030 H3BS24 57 aa6.6□□□□□ -1.35
USP53-201ENST00000274030 TENM4Q6N022 2769 aa6.59□□□□□ -1.35
USP53-201ENST00000274030 MYO15AQ9UKN7 3530 aa6.57□□□□□ -1.36
USP53-201ENST00000274030 KRTAP7-1Q8IUC3 87 aa6.57□□□□□ -1.36
USP53-201ENST00000274030 ZZEF1O43149 2961 aa6.55□□□□□ -1.36
USP53-201ENST00000274030 Q6ZRN7 208 aaPredicted RBP6.55□□□□□ -1.36
USP53-201ENST00000274030 A0A0A0MQY5 61 aa6.54□□□□□ -1.36
USP53-201ENST00000274030 PLAC4Q8WY50 150 aa6.54□□□□□ -1.36
USP53-201ENST00000274030 A8MU10 97 aa6.51□□□□□ -1.37
USP53-201ENST00000274030 KRTAP13-2Q52LG2 175 aa6.49□□□□□ -1.37
USP53-201ENST00000274030 DCHS2Q6V1P9 2916 aa6.49□□□□□ -1.37
USP53-201ENST00000274030 SPTBN5Q9NRC6 3674 aaKnown RBP6.48□□□□□ -1.37
USP53-201ENST00000274030 NIPBLQ6KC79 2804 aaeCLIP6.46□□□□□ -1.38
USP53-201ENST00000274030 ASB16-AS1Q495Z4 193 aa6.44□□□□□ -1.38
USP53-201ENST00000274030 A8MUU9 505 aa6.43□□□□□ -1.38
USP53-201ENST00000274030 ZANQ9Y493 2812 aa6.41□□□□□ -1.38
USP53-201ENST00000274030 KRTAP13-1Q8IUC0 172 aa6.41□□□□□ -1.38
USP53-201ENST00000274030 RPS29P62273 56 aaKnown RBP6.38□□□□□ -1.39
USP53-201ENST00000274030 C20orf166-AS1Q96NR2 134 aa6.37□□□□□ -1.39
USP53-201ENST00000274030 TENM3Q9P273 2699 aa6.35□□□□□ -1.39
USP53-201ENST00000274030 LOC400499M0QZD8 3231 aa6.34□□□□□ -1.39
USP53-201ENST00000274030 KRTAP25-1Q3LHN0 102 aa6.32□□□□□ -1.4
USP53-201ENST00000274030 A6NN06 94 aa6.32□□□□□ -1.4
USP53-201ENST00000274030 NF1P21359 2839 aa6.31□□□□□ -1.4
USP53-201ENST00000274030 FBN2P35556 2912 aa6.29□□□□□ -1.4
USP53-201ENST00000274030 DMXL1Q9Y485 3027 aa6.29□□□□□ -1.4
USP53-201ENST00000274030 TENM1Q9UKZ4 2725 aa6.27□□□□□ -1.4
USP53-201ENST00000274030 WDFY3Q8IZQ1 3526 aa6.27□□□□□ -1.41
USP53-201ENST00000274030 TNRC18O15417 2968 aaPredicted RBP6.26□□□□□ -1.41
USP53-201ENST00000274030 NDUFAF8A1L188 74 aa6.2□□□□□ -1.42
USP53-201ENST00000274030 KRTAP16-1A8MUX0 517 aa6.19□□□□□ -1.42
USP53-201ENST00000274030 ASPMQ8IZT6 3477 aa6.19□□□□□ -1.42
USP53-201ENST00000274030 PKD1L1Q8TDX9 2849 aa6.18□□□□□ -1.42
USP53-201ENST00000274030 DCHS1Q96JQ0 3298 aa6.18□□□□□ -1.42
USP53-201ENST00000274030 TNP1P09430 55 aa6.17□□□□□ -1.42
USP53-201ENST00000274030 MUC3AQ02505 3323 aa6.16□□□□□ -1.42
USP53-201ENST00000274030 A0A1B0GVY2 172 aa6.16□□□□□ -1.42
USP53-201ENST00000274030 HRNRQ86YZ3 2850 aaPredicted RBP6.15□□□□□ -1.42
USP53-201ENST00000274030 KRTAP1-4P0C5Y4 121 aa6.14□□□□□ -1.43
USP53-201ENST00000274030 TENM2Q9NT68 2774 aa6.14□□□□□ -1.43
USP53-201ENST00000274030 C10orf95Q9H7T3 257 aa6.14□□□□□ -1.43
USP53-201ENST00000274030 CELSR1Q9NYQ6 3014 aa6.13□□□□□ -1.43
USP53-201ENST00000274030 XP32Q5T750 250 aa6.12□□□□□ -1.43
USP53-201ENST00000274030 RELNP78509 3460 aa6.1□□□□□ -1.43
USP53-201ENST00000274030 LAMA5O15230 3695 aa6.1□□□□□ -1.43
USP53-201ENST00000274030 KRTAP10-8P60410 259 aa6.09□□□□□ -1.43
USP53-201ENST00000274030 VWFP04275 2813 aa6.08□□□□□ -1.44
USP53-201ENST00000274030 KRTAP21-3Q3LHN1 58 aa6.08□□□□□ -1.44
USP53-201ENST00000274030 ZFHX4Q86UP3 3567 aa6.07□□□□□ -1.44
USP53-201ENST00000274030 DMDP11532 3685 aa6.04□□□□□ -1.44
USP53-201ENST00000274030 TGP01266 2768 aa6.03□□□□□ -1.44
USP53-201ENST00000274030 H0YAA0 97 aa6□□□□□ -1.45
USP53-201ENST00000274030 PDZD2O15018 2839 aa5.99□□□□□ -1.45
USP53-201ENST00000274030 MXRA5Q9NR99 2828 aa5.98□□□□□ -1.45
USP53-201ENST00000274030 KRTAP10-10P60014 251 aa5.95□□□□□ -1.46
USP53-201ENST00000274030 P0C880 135 aa5.93□□□□□ -1.46
USP53-201ENST00000274030 TPRXLQ17RH7 258 aa5.93□□□□□ -1.46
USP53-201ENST00000274030 SRRM2Q9UQ35 2752 aaKnown RBP5.92□□□□□ -1.46
USP53-201ENST00000274030 PP632Q6XCG6 107 aa5.89□□□□□ -1.47
USP53-201ENST00000274030 KRTAP13-3Q3SY46 172 aa5.88□□□□□ -1.47
USP53-201ENST00000274030 FBN1P35555 2871 aaKnown RBP5.85□□□□□ -1.47
USP53-201ENST00000274030 CUBNO60494 3623 aa5.82□□□□□ -1.48
USP53-201ENST00000274030 CSMD1Q96PZ7 3565 aa5.8□□□□□ -1.48
USP53-201ENST00000274030 SMG1Q96Q15 3661 aaKnown RBP5.8□□□□□ -1.48
USP53-201ENST00000274030 SVEP1Q4LDE5 3571 aa5.77□□□□□ -1.49
USP53-201ENST00000274030 PRO2289Q9P1D8 64 aa5.75□□□□□ -1.49
USP53-201ENST00000274030 NBPF19A0A087WUL8 3843 aa5.74□□□□□ -1.49
USP53-201ENST00000274030 KRTAP12-2P59991 146 aa5.67□□□□□ -1.5
USP53-201ENST00000274030 FBN3Q75N90 2809 aa5.62□□□□□ -1.51
USP53-201ENST00000274030 COL7A1Q02388 2944 aa5.58□□□□□ -1.52
USP53-201ENST00000274030 CSMD2Q7Z408 3487 aa5.57□□□□□ -1.52
USP53-201ENST00000274030 OTOGQ6ZRI0 2925 aa5.56□□□□□ -1.52
USP53-201ENST00000274030 MEGF8Q7Z7M0 2845 aa5.54□□□□□ -1.52
USP53-201ENST00000274030 KRTAP12-1P59990 96 aa5.53□□□□□ -1.52
USP53-201ENST00000274030 KRTAP3-1Q9BYR8 98 aa5.53□□□□□ -1.52
USP53-201ENST00000274030 SPENQ96T58 3664 aaKnown RBP5.51□□□□□ -1.53
USP53-201ENST00000274030 KRTAP13-4Q3LI77 160 aa5.5□□□□□ -1.53
USP53-201ENST00000274030 TRRAPQ9Y4A5 3859 aa5.38□□□□□ -1.55
USP53-201ENST00000274030 KRTAP10-6P60371 365 aaPredicted RBP5.36□□□□□ -1.55
USP53-201ENST00000274030 KRTAP15-1Q3LI76 137 aa5.35□□□□□ -1.55
USP53-201ENST00000274030 ANK3Q12955 4377 aaKnown RBP5.3□□□□□ -1.56
USP53-201ENST00000274030 MT1HL1P0DM35 61 aa5.26□□□□□ -1.57
USP53-201ENST00000274030 BSNQ9UPA5 3926 aa5.26□□□□□ -1.57
USP53-201ENST00000274030 KRTAP4-5Q9BYR2 181 aa5.2□□□□□ -1.58
USP53-201ENST00000274030 CRCT1Q9UGL9 99 aa5.19□□□□□ -1.58
USP53-201ENST00000274030 KRTAP3-3Q9BYR6 98 aa5.16□□□□□ -1.58
USP53-201ENST00000274030 VPS13CQ709C8 3753 aa5.15□□□□□ -1.58
USP53-201ENST00000274030 KRTAP3-2Q9BYR7 98 aa5.15□□□□□ -1.58
USP53-201ENST00000274030 KRTAP10-12P60413 245 aa5.1□□□□□ -1.59
USP53-201ENST00000274030 CSMD3Q7Z407 3707 aa5.07□□□□□ -1.6
USP53-201ENST00000274030 KRTAP10-4P60372 401 aaPredicted RBP5.06□□□□□ -1.6
USP53-201ENST00000274030 HUWE1Q7Z6Z7 4374 aaKnown RBP5.03□□□□□ -1.6
USP53-201ENST00000274030 LORP23490 312 aaPredicted RBP4.97□□□□□ -1.61
USP53-201ENST00000274030 ZNF469Q96JG9 3925 aaPredicted RBP4.97□□□□□ -1.61
USP53-201ENST00000274030 KRTAP12-3P60328 96 aa4.96□□□□□ -1.62
USP53-201ENST00000274030 LCE3AQ5TA76 89 aa4.93□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms