RNA–Protein interactions for RNA: ENST00000267260.4

SRRM4-201, Transcript of serine/arginine repetitive matrix 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SRRM4, Length 8,477 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRRM4-201ENST00000267260 CELSR2Q9HCU4 2923 aa6.8□□□□□ -1.32
SRRM4-201ENST00000267260 NIPBLQ6KC79 2804 aaeCLIP6.8□□□□□ -1.32
SRRM4-201ENST00000267260 CRYBG3Q68DQ2 2970 aa6.79□□□□□ -1.32
SRRM4-201ENST00000267260 UNC80Q8N2C7 3258 aa6.75□□□□□ -1.33
SRRM4-201ENST00000267260 DNAH14Q0VDD8 3507 aa6.74□□□□□ -1.33
SRRM4-201ENST00000267260 HTTP42858 3142 aa6.74□□□□□ -1.33
SRRM4-201ENST00000267260 TACC2O95359 2948 aa6.73□□□□□ -1.33
SRRM4-201ENST00000267260 LAMA3Q16787 3333 aa6.73□□□□□ -1.33
SRRM4-201ENST00000267260 Q6ZRN7 208 aaPredicted RBP6.71□□□□□ -1.34
SRRM4-201ENST00000267260 P0C880 135 aa6.69□□□□□ -1.34
SRRM4-201ENST00000267260 LAMA1P25391 3075 aa6.69□□□□□ -1.34
SRRM4-201ENST00000267260 TNRC18O15417 2968 aaPredicted RBP6.68□□□□□ -1.34
SRRM4-201ENST00000267260 USP34Q70CQ2 3546 aa6.66□□□□□ -1.34
SRRM4-201ENST00000267260 PDZD2O15018 2839 aa6.66□□□□□ -1.34
SRRM4-201ENST00000267260 TGP01266 2768 aa6.66□□□□□ -1.34
SRRM4-201ENST00000267260 BRCA2P51587 3418 aa6.66□□□□□ -1.34
SRRM4-201ENST00000267260 ZZEF1O43149 2961 aa6.65□□□□□ -1.34
SRRM4-201ENST00000267260 NBEAQ8NFP9 2946 aa6.64□□□□□ -1.35
SRRM4-201ENST00000267260 KRTAP13-1Q8IUC0 172 aa6.62□□□□□ -1.35
SRRM4-201ENST00000267260 KRTAP13-2Q52LG2 175 aa6.59□□□□□ -1.35
SRRM4-201ENST00000267260 DCHS2Q6V1P9 2916 aa6.59□□□□□ -1.35
SRRM4-201ENST00000267260 KRTAP10-8P60410 259 aa6.57□□□□□ -1.36
SRRM4-201ENST00000267260 PRO2289Q9P1D8 64 aa6.57□□□□□ -1.36
SRRM4-201ENST00000267260 BOD1L1Q8NFC6 3051 aa6.56□□□□□ -1.36
SRRM4-201ENST00000267260 COL6A3P12111 3177 aa6.55□□□□□ -1.36
SRRM4-201ENST00000267260 H0YAA0 97 aa6.55□□□□□ -1.36
SRRM4-201ENST00000267260 TENM4Q6N022 2769 aa6.51□□□□□ -1.37
SRRM4-201ENST00000267260 CDH23Q9H251 3354 aa6.49□□□□□ -1.37
SRRM4-201ENST00000267260 KRTAP7-1Q8IUC3 87 aa6.48□□□□□ -1.37
SRRM4-201ENST00000267260 ZANQ9Y493 2812 aa6.46□□□□□ -1.37
SRRM4-201ENST00000267260 DMXL1Q9Y485 3027 aa6.45□□□□□ -1.38
SRRM4-201ENST00000267260 ATMQ13315 3056 aa6.44□□□□□ -1.38
SRRM4-201ENST00000267260 CELSR1Q9NYQ6 3014 aa6.43□□□□□ -1.38
SRRM4-201ENST00000267260 SPEGQ15772 3267 aa6.43□□□□□ -1.38
SRRM4-201ENST00000267260 ADGRG4Q8IZF6 3080 aa6.42□□□□□ -1.38
SRRM4-201ENST00000267260 VCANP13611 3396 aa6.41□□□□□ -1.38
SRRM4-201ENST00000267260 CFAP47Q6ZTR5 3102 aa6.4□□□□□ -1.38
SRRM4-201ENST00000267260 VWFP04275 2813 aa6.4□□□□□ -1.38
SRRM4-201ENST00000267260 FBN2P35556 2912 aa6.39□□□□□ -1.39
SRRM4-201ENST00000267260 PKD1L1Q8TDX9 2849 aa6.38□□□□□ -1.39
SRRM4-201ENST00000267260 SRRM2Q9UQ35 2752 aaKnown RBP6.37□□□□□ -1.39
SRRM4-201ENST00000267260 XP32Q5T750 250 aa6.36□□□□□ -1.39
SRRM4-201ENST00000267260 TPRXLQ17RH7 258 aa6.34□□□□□ -1.39
SRRM4-201ENST00000267260 KRTAP10-10P60014 251 aa6.27□□□□□ -1.41
SRRM4-201ENST00000267260 SZT2Q5T011 3432 aa6.26□□□□□ -1.41
SRRM4-201ENST00000267260 MXRA5Q9NR99 2828 aa6.25□□□□□ -1.41
SRRM4-201ENST00000267260 A0A1B0GVY2 172 aa6.23□□□□□ -1.41
SRRM4-201ENST00000267260 KRTAP21-3Q3LHN1 58 aa6.22□□□□□ -1.41
SRRM4-201ENST00000267260 WDFY3Q8IZQ1 3526 aa6.21□□□□□ -1.42
SRRM4-201ENST00000267260 KRTAP1-4P0C5Y4 121 aa6.19□□□□□ -1.42
SRRM4-201ENST00000267260 COL7A1Q02388 2944 aa6.17□□□□□ -1.42
SRRM4-201ENST00000267260 TENM2Q9NT68 2774 aa6.17□□□□□ -1.42
SRRM4-201ENST00000267260 HRNRQ86YZ3 2850 aaPredicted RBP6.16□□□□□ -1.42
SRRM4-201ENST00000267260 NBPF19A0A087WUL8 3843 aa6.16□□□□□ -1.42
SRRM4-201ENST00000267260 SPTBN5Q9NRC6 3674 aaKnown RBP6.15□□□□□ -1.42
SRRM4-201ENST00000267260 KRTAP12-2P59991 146 aa6.14□□□□□ -1.43
SRRM4-201ENST00000267260 EYSQ5T1H1 3165 aa6.13□□□□□ -1.43
SRRM4-201ENST00000267260 KRTAP13-4Q3LI77 160 aa6.13□□□□□ -1.43
SRRM4-201ENST00000267260 INE1O15225 51 aa6.1□□□□□ -1.43
SRRM4-201ENST00000267260 KRTAP13-3Q3SY46 172 aa6.09□□□□□ -1.43
SRRM4-201ENST00000267260 ZFHX4Q86UP3 3567 aa6.09□□□□□ -1.43
SRRM4-201ENST00000267260 MYO15AQ9UKN7 3530 aa6.06□□□□□ -1.44
SRRM4-201ENST00000267260 LOC400499M0QZD8 3231 aa6.05□□□□□ -1.44
SRRM4-201ENST00000267260 ASPMQ8IZT6 3477 aa6.03□□□□□ -1.44
SRRM4-201ENST00000267260 LAMA5O15230 3695 aa6.02□□□□□ -1.45
SRRM4-201ENST00000267260 DCHS1Q96JQ0 3298 aa5.97□□□□□ -1.45
SRRM4-201ENST00000267260 MEGF8Q7Z7M0 2845 aa5.96□□□□□ -1.45
SRRM4-201ENST00000267260 KRTAP15-1Q3LI76 137 aa5.96□□□□□ -1.46
SRRM4-201ENST00000267260 KRTAP12-1P59990 96 aa5.94□□□□□ -1.46
SRRM4-201ENST00000267260 SPENQ96T58 3664 aaKnown RBP5.84□□□□□ -1.47
SRRM4-201ENST00000267260 CSMD1Q96PZ7 3565 aa5.84□□□□□ -1.47
SRRM4-201ENST00000267260 ZFHX3Q15911 3703 aa5.84□□□□□ -1.47
SRRM4-201ENST00000267260 RELNP78509 3460 aa5.83□□□□□ -1.48
SRRM4-201ENST00000267260 FBN3Q75N90 2809 aa5.81□□□□□ -1.48
SRRM4-201ENST00000267260 SMG1Q96Q15 3661 aaKnown RBP5.8□□□□□ -1.48
SRRM4-201ENST00000267260 FBN1P35555 2871 aaKnown RBP5.79□□□□□ -1.48
SRRM4-201ENST00000267260 DMDP11532 3685 aa5.73□□□□□ -1.49
SRRM4-201ENST00000267260 VPS13CQ709C8 3753 aa5.6□□□□□ -1.51
SRRM4-201ENST00000267260 OTOGQ6ZRI0 2925 aa5.59□□□□□ -1.51
SRRM4-201ENST00000267260 CUBNO60494 3623 aa5.58□□□□□ -1.52
SRRM4-201ENST00000267260 AKAP9Q99996 3911 aa5.57□□□□□ -1.52
SRRM4-201ENST00000267260 KRTAP3-1Q9BYR8 98 aa5.56□□□□□ -1.52
SRRM4-201ENST00000267260 KRTAP10-12P60413 245 aa5.55□□□□□ -1.52
SRRM4-201ENST00000267260 KRTAP10-6P60371 365 aaPredicted RBP5.54□□□□□ -1.52
SRRM4-201ENST00000267260 KRTAP23-1A1A580 65 aa5.52□□□□□ -1.53
SRRM4-201ENST00000267260 TRRAPQ9Y4A5 3859 aa5.5□□□□□ -1.53
SRRM4-201ENST00000267260 SVEP1Q4LDE5 3571 aa5.49□□□□□ -1.53
SRRM4-201ENST00000267260 CRCT1Q9UGL9 99 aa5.46□□□□□ -1.53
SRRM4-201ENST00000267260 KRTAP12-3P60328 96 aa5.36□□□□□ -1.55
SRRM4-201ENST00000267260 MUC3AQ02505 3323 aa5.34□□□□□ -1.55
SRRM4-201ENST00000267260 BSNQ9UPA5 3926 aa5.34□□□□□ -1.56
SRRM4-201ENST00000267260 ALMS1Q8TCU4 4167 aa5.33□□□□□ -1.56
SRRM4-201ENST00000267260 CSMD3Q7Z407 3707 aa5.32□□□□□ -1.56
SRRM4-201ENST00000267260 KRTAP3-2Q9BYR7 98 aa5.26□□□□□ -1.57
SRRM4-201ENST00000267260 KRTAP3-3Q9BYR6 98 aa5.24□□□□□ -1.57
SRRM4-201ENST00000267260 KRTAP10-5P60370 271 aa5.23□□□□□ -1.57
SRRM4-201ENST00000267260 CSMD2Q7Z408 3487 aa5.2□□□□□ -1.58
SRRM4-201ENST00000267260 CMYA5Q8N3K9 4069 aa5.2□□□□□ -1.58
SRRM4-201ENST00000267260 LCE3AQ5TA76 89 aa5.19□□□□□ -1.58
SRRM4-201ENST00000267260 ANK3Q12955 4377 aaKnown RBP5.11□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms