RNA–Protein interactions for RNA: ENST00000265745.13

VPS41-201, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 2

Gene VPS41, Length 769 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-201ENST00000265745 TRBV20-1A0A075B6N2 111 aa4.95□□□□□ -1.62
VPS41-201ENST00000265745 H3BQ85 93 aa4.95□□□□□ -1.62
VPS41-201ENST00000265745 LINC00313P59037 77 aa4.95□□□□□ -1.62
VPS41-201ENST00000265745 Q8N9P0 234 aaPredicted RBP4.95□□□□□ -1.62
VPS41-201ENST00000265745 SIGMAR1Q99720 223 aa4.95□□□□□ -1.62
VPS41-201ENST00000265745 KRTAP16-1A8MUX0 517 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 TMEM256-PLSCR3K7ERE1 68 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 K7ERJ3 54 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 DNAL4O96015 105 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 IGKV4-1P06312 121 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 HSD52Q0P140 79 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 PYY3Q5JQD4 70 aa4.94□□□□□ -1.62
VPS41-201ENST00000265745 IGKV2D-30A0A075B6S6 120 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 COX6CP09669 75 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 PSMB2P49721 201 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 NOTCH2NLQ7Z3S9 236 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 KRTAP9-8Q9BYQ0 159 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 LINC00472Q9H8W2 130 aa4.93□□□□□ -1.62
VPS41-201ENST00000265745 KRTAP4-8A0A0G2JLE6 195 aa4.92□□□□□ -1.62
VPS41-201ENST00000265745 A0A1B0GV72 72 aa4.92□□□□□ -1.62
VPS41-201ENST00000265745 CCKP06307 115 aa4.91□□□□□ -1.62
VPS41-201ENST00000265745 DEFB116Q30KQ4 102 aa4.91□□□□□ -1.62
VPS41-201ENST00000265745 TRACP01848 142 aa4.9□□□□□ -1.63
VPS41-201ENST00000265745 IGHV6-1A0A0B4J1U7 121 aa4.88□□□□□ -1.63
VPS41-201ENST00000265745 UQCR10Q9UDW1 63 aa4.88□□□□□ -1.63
VPS41-201ENST00000265745 SCGB1C2P0DMR2 95 aa4.87□□□□□ -1.63
VPS41-201ENST00000265745 HRES1P13985 223 aa4.87□□□□□ -1.63
VPS41-201ENST00000265745 RBM3P98179 157 aaKnown RBP4.86□□□□□ -1.63
VPS41-201ENST00000265745 FAM236DA0A1B0GTK5 79 aa4.85□□□□□ -1.63
VPS41-201ENST00000265745 FAM236CP0DP71 79 aa4.85□□□□□ -1.63
VPS41-201ENST00000265745 DSCR8Q96T75 97 aa4.85□□□□□ -1.63
VPS41-201ENST00000265745 VPS25Q9BRG1 176 aa4.85□□□□□ -1.63
VPS41-201ENST00000265745 USH2AO75445 5202 aa4.85□□□□□ -1.63
VPS41-201ENST00000265745 A0A1B0GVX0 72 aa4.84□□□□□ -1.63
VPS41-201ENST00000265745 C8orf87E5RJ46 101 aa4.84□□□□□ -1.63
VPS41-201ENST00000265745 BAALC-AS2P0C853 105 aa4.84□□□□□ -1.63
VPS41-201ENST00000265745 RBM12B-AS1Q9P1G2 102 aa4.84□□□□□ -1.63
VPS41-201ENST00000265745 MT2AP02795 61 aa4.83□□□□□ -1.64
VPS41-201ENST00000265745 C9JAW5 83 aa4.82□□□□□ -1.64
VPS41-201ENST00000265745 Q6ZQT0 140 aa4.82□□□□□ -1.64
VPS41-201ENST00000265745 SSPOA2VEC9 5147 aa4.81□□□□□ -1.64
VPS41-201ENST00000265745 J3KT08 172 aa4.81□□□□□ -1.64
VPS41-201ENST00000265745 MT1FP04733 61 aa4.8□□□□□ -1.64
VPS41-201ENST00000265745 ZCCHC13Q8WW36 166 aaKnown RBP4.8□□□□□ -1.64
VPS41-201ENST00000265745 SPINK7P58062 85 aa4.79□□□□□ -1.64
VPS41-201ENST00000265745 NDUFB1O75438 58 aa4.77□□□□□ -1.65
VPS41-201ENST00000265745 KRTAP10-10P60014 251 aa4.77□□□□□ -1.65
VPS41-201ENST00000265745 LOC110117498A0A087WWA1 95 aa4.76□□□□□ -1.65
VPS41-201ENST00000265745 A0A1B0GW54 56 aa4.76□□□□□ -1.65
VPS41-201ENST00000265745 JMJD7-PLA2G4BH0Y9G9 81 aa4.76□□□□□ -1.65
VPS41-201ENST00000265745 ATXN8Q156A1 80 aa4.76□□□□□ -1.65
VPS41-201ENST00000265745 MTURNQ8N3F0 131 aa4.76□□□□□ -1.65
VPS41-201ENST00000265745 A8MWP4 228 aa4.75□□□□□ -1.65
VPS41-201ENST00000265745 M0R143 59 aa4.75□□□□□ -1.65
VPS41-201ENST00000265745 PDE6GP18545 87 aa4.75□□□□□ -1.65
VPS41-201ENST00000265745 NAA38Q9BRA0 125 aaKnown RBP4.75□□□□□ -1.65
VPS41-201ENST00000265745 KRTAP4-9Q9BYQ8 210 aa4.75□□□□□ -1.65
VPS41-201ENST00000265745 C8orf17Q9NRJ1 99 aa4.75□□□□□ -1.65
VPS41-201ENST00000265745 IGKV3D-7A0A0C4DH55 119 aa4.74□□□□□ -1.65
VPS41-201ENST00000265745 FCGBPQ9Y6R7 5405 aaPredicted RBP4.72□□□□□ -1.65
VPS41-201ENST00000265745 C14orf132Q9NPU4 83 aa4.72□□□□□ -1.65
VPS41-201ENST00000265745 LYRM7Q5U5X0 104 aa4.71□□□□□ -1.66
VPS41-201ENST00000265745 PRR15Q8IV56 129 aa4.71□□□□□ -1.66
VPS41-201ENST00000265745 OCR1Q9BZK8 76 aa4.71□□□□□ -1.66
VPS41-201ENST00000265745 WFDC13Q8IUB5 93 aa4.7□□□□□ -1.66
VPS41-201ENST00000265745 KRTAP4-7Q9BYR0 210 aa4.7□□□□□ -1.66
VPS41-201ENST00000265745 NREPQ16612 68 aa4.69□□□□□ -1.66
VPS41-201ENST00000265745 KRTAP4-11Q9BYQ6 195 aa4.67□□□□□ -1.66
VPS41-201ENST00000265745 MMP24-AS1A0A0U1RRL7 71 aa4.66□□□□□ -1.66
VPS41-201ENST00000265745 PCP4L1A6NKN8 68 aa4.66□□□□□ -1.66
VPS41-201ENST00000265745 TMEM254Q8TBM7 123 aa4.66□□□□□ -1.66
VPS41-201ENST00000265745 MRPL34Q9BQ48 92 aaKnown RBP4.66□□□□□ -1.66
VPS41-201ENST00000265745 SMIM6P0DI80 62 aa4.65□□□□□ -1.67
VPS41-201ENST00000265745 hDV103S1A0JD37 113 aa4.64□□□□□ -1.67
VPS41-201ENST00000265745 K7EQZ3 153 aa4.63□□□□□ -1.67
VPS41-201ENST00000265745 SEC61GP60059 68 aa4.63□□□□□ -1.67
VPS41-201ENST00000265745 SYNE2Q8WXH0 6885 aaKnown RBP4.62□□□□□ -1.67
VPS41-201ENST00000265745 H3BT86 120 aa4.62□□□□□ -1.67
VPS41-201ENST00000265745 BATFQ16520 125 aa4.62□□□□□ -1.67
VPS41-201ENST00000265745 H1FX-AS1Q4G0G2 97 aa4.62□□□□□ -1.67
VPS41-201ENST00000265745 MACF1Q9UPN3 7388 aaKnown RBP4.62□□□□□ -1.67
VPS41-201ENST00000265745 NDUFS5O43920 106 aa4.61□□□□□ -1.67
VPS41-201ENST00000265745 KRTAP19-6Q3LI70 58 aa4.61□□□□□ -1.67
VPS41-201ENST00000265745 TSTD3H0UI37 97 aa4.6□□□□□ -1.67
VPS41-201ENST00000265745 Q5W150 140 aa4.6□□□□□ -1.67
VPS41-201ENST00000265745 A0A1W2PPM0 123 aa4.59□□□□□ -1.67
VPS41-201ENST00000265745 BPY2O14599 106 aa4.59□□□□□ -1.67
VPS41-201ENST00000265745 TAX1BP3O14907 124 aa4.59□□□□□ -1.67
VPS41-201ENST00000265745 LINC00846Q9NV44 126 aa4.59□□□□□ -1.67
VPS41-201ENST00000265745 LCE1AQ5T7P2 110 aa4.58□□□□□ -1.68
VPS41-201ENST00000265745 NDUFAF8A1L188 74 aa4.56□□□□□ -1.68
VPS41-201ENST00000265745 CASC2Q6XLA1 102 aa4.55□□□□□ -1.68
VPS41-201ENST00000265745 C7orf65Q6ZTY9 151 aa4.55□□□□□ -1.68
VPS41-201ENST00000265745 Q8N9L7 120 aa4.55□□□□□ -1.68
VPS41-201ENST00000265745 HCG22E2RYF7 251 aa4.53□□□□□ -1.68
VPS41-201ENST00000265745 C4orf26Q17RF5 130 aa4.52□□□□□ -1.69
VPS41-201ENST00000265745 LOC105371267A0A1B0GV96 52 aa4.51□□□□□ -1.69
VPS41-201ENST00000265745 CXCL6P80162 114 aa4.51□□□□□ -1.69
VPS41-201ENST00000265745 SPCS1Q9Y6A9 102 aa4.51□□□□□ -1.69
VPS41-201ENST00000265745 KRTAP4-2Q9BYR5 136 aa4.49□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 89.2 ms