RNA–Protein interactions for RNA: ENST00000257181.9

PRPF38A-201, Transcript of pre-mRNA processing factor 38A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PRPF38A, Length 5,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF38A-201ENST00000257181 COL12A1Q99715 3063 aa6.63□□□□□ -1.35
PRPF38A-201ENST00000257181 ATMQ13315 3056 aa6.62□□□□□ -1.35
PRPF38A-201ENST00000257181 FRYQ5TBA9 3013 aa6.6□□□□□ -1.35
PRPF38A-201ENST00000257181 MKI67P46013 3256 aaKnown RBP6.6□□□□□ -1.35
PRPF38A-201ENST00000257181 NBEAQ8NFP9 2946 aa6.58□□□□□ -1.36
PRPF38A-201ENST00000257181 TENM2Q9NT68 2774 aa6.58□□□□□ -1.36
PRPF38A-201ENST00000257181 DMXL2Q8TDJ6 3036 aa6.58□□□□□ -1.36
PRPF38A-201ENST00000257181 A6NN06 94 aa6.58□□□□□ -1.36
PRPF38A-201ENST00000257181 MXRA5Q9NR99 2828 aa6.58□□□□□ -1.36
PRPF38A-201ENST00000257181 HRNRQ86YZ3 2850 aaPredicted RBP6.57□□□□□ -1.36
PRPF38A-201ENST00000257181 FRYLO94915 3013 aa6.55□□□□□ -1.36
PRPF38A-201ENST00000257181 UNC80Q8N2C7 3258 aa6.55□□□□□ -1.36
PRPF38A-201ENST00000257181 KRTAP10-4P60372 401 aaPredicted RBP6.52□□□□□ -1.37
PRPF38A-201ENST00000257181 HUWE1Q7Z6Z7 4374 aaKnown RBP6.51□□□□□ -1.37
PRPF38A-201ENST00000257181 CFAP54Q96N23 3096 aa6.5□□□□□ -1.37
PRPF38A-201ENST00000257181 PRAC1Q96KF2 57 aa6.49□□□□□ -1.37
PRPF38A-201ENST00000257181 ANK3Q12955 4377 aaKnown RBP6.47□□□□□ -1.37
PRPF38A-201ENST00000257181 KALRNO60229 2985 aa6.46□□□□□ -1.38
PRPF38A-201ENST00000257181 FBN2P35556 2912 aa6.44□□□□□ -1.38
PRPF38A-201ENST00000257181 A0A0C4DFX4 3053 aa6.43□□□□□ -1.38
PRPF38A-201ENST00000257181 OTOGQ6ZRI0 2925 aa6.43□□□□□ -1.38
PRPF38A-201ENST00000257181 TACC2O95359 2948 aa6.42□□□□□ -1.38
PRPF38A-201ENST00000257181 PCNTO95613 3336 aa6.41□□□□□ -1.38
PRPF38A-201ENST00000257181 NF1P21359 2839 aa6.41□□□□□ -1.38
PRPF38A-201ENST00000257181 CRYBG3Q68DQ2 2970 aa6.41□□□□□ -1.38
PRPF38A-201ENST00000257181 ZZEF1O43149 2961 aa6.4□□□□□ -1.38
PRPF38A-201ENST00000257181 P0C880 135 aa6.39□□□□□ -1.39
PRPF38A-201ENST00000257181 TENM1Q9UKZ4 2725 aa6.37□□□□□ -1.39
PRPF38A-201ENST00000257181 TENM3Q9P273 2699 aa6.37□□□□□ -1.39
PRPF38A-201ENST00000257181 DMXL1Q9Y485 3027 aa6.35□□□□□ -1.39
PRPF38A-201ENST00000257181 TRIOO75962 3097 aa6.34□□□□□ -1.39
PRPF38A-201ENST00000257181 KRTAP13-4Q3LI77 160 aa6.34□□□□□ -1.4
PRPF38A-201ENST00000257181 C10orf95Q9H7T3 257 aa6.33□□□□□ -1.4
PRPF38A-201ENST00000257181 FBN3Q75N90 2809 aa6.32□□□□□ -1.4
PRPF38A-201ENST00000257181 DCHS2Q6V1P9 2916 aa6.31□□□□□ -1.4
PRPF38A-201ENST00000257181 CELSR2Q9HCU4 2923 aa6.31□□□□□ -1.4
PRPF38A-201ENST00000257181 ZANQ9Y493 2812 aa6.3□□□□□ -1.4
PRPF38A-201ENST00000257181 KRTAP4-5Q9BYR2 181 aa6.3□□□□□ -1.4
PRPF38A-201ENST00000257181 VPS13AQ96RL7 3174 aa6.3□□□□□ -1.4
PRPF38A-201ENST00000257181 SZT2Q5T011 3432 aa6.28□□□□□ -1.4
PRPF38A-201ENST00000257181 COL6A3P12111 3177 aa6.26□□□□□ -1.41
PRPF38A-201ENST00000257181 CDH23Q9H251 3354 aa6.26□□□□□ -1.41
PRPF38A-201ENST00000257181 BRCA2P51587 3418 aa6.25□□□□□ -1.41
PRPF38A-201ENST00000257181 USP34Q70CQ2 3546 aa6.24□□□□□ -1.41
PRPF38A-201ENST00000257181 ADGRG4Q8IZF6 3080 aa6.24□□□□□ -1.41
PRPF38A-201ENST00000257181 LAMA2P24043 3122 aaKnown RBP6.21□□□□□ -1.42
PRPF38A-201ENST00000257181 REV3LO60673 3130 aa6.2□□□□□ -1.42
PRPF38A-201ENST00000257181 KRTAP3-1Q9BYR8 98 aa6.15□□□□□ -1.43
PRPF38A-201ENST00000257181 DNAH1Q9P2D7 4330 aa6.14□□□□□ -1.43
PRPF38A-201ENST00000257181 SPTBN5Q9NRC6 3674 aaKnown RBP6.13□□□□□ -1.43
PRPF38A-201ENST00000257181 CELSR1Q9NYQ6 3014 aa6.09□□□□□ -1.43
PRPF38A-201ENST00000257181 KRTAP12-1P59990 96 aa6.09□□□□□ -1.43
PRPF38A-201ENST00000257181 BOD1L1Q8NFC6 3051 aa6.08□□□□□ -1.44
PRPF38A-201ENST00000257181 FBN1P35555 2871 aaKnown RBP6.07□□□□□ -1.44
PRPF38A-201ENST00000257181 XIRP2A4UGR9 3374 aa6.06□□□□□ -1.44
PRPF38A-201ENST00000257181 DNAH10Q8IVF4 4471 aa6.05□□□□□ -1.44
PRPF38A-201ENST00000257181 KRTAP23-1A1A580 65 aa6.05□□□□□ -1.44
PRPF38A-201ENST00000257181 KRTAP12-2P59991 146 aa6.05□□□□□ -1.44
PRPF38A-201ENST00000257181 VWFP04275 2813 aa6.04□□□□□ -1.44
PRPF38A-201ENST00000257181 PKD1L1Q8TDX9 2849 aa6.04□□□□□ -1.44
PRPF38A-201ENST00000257181 DNAH11Q96DT5 4516 aa6□□□□□ -1.45
PRPF38A-201ENST00000257181 KRTAP10-12P60413 245 aa5.99□□□□□ -1.45
PRPF38A-201ENST00000257181 FREM2Q5SZK8 3169 aa5.98□□□□□ -1.45
PRPF38A-201ENST00000257181 KRTAP15-1Q3LI76 137 aa5.97□□□□□ -1.45
PRPF38A-201ENST00000257181 TGP01266 2768 aa5.95□□□□□ -1.46
PRPF38A-201ENST00000257181 KRTAP10-6P60371 365 aaPredicted RBP5.95□□□□□ -1.46
PRPF38A-201ENST00000257181 DNAH2Q9P225 4427 aa5.93□□□□□ -1.46
PRPF38A-201ENST00000257181 DNAH9Q9NYC9 4486 aa5.89□□□□□ -1.47
PRPF38A-201ENST00000257181 NBPF19A0A087WUL8 3843 aa5.86□□□□□ -1.47
PRPF38A-201ENST00000257181 MT1HP80294 61 aa5.84□□□□□ -1.47
PRPF38A-201ENST00000257181 KRTAP3-3Q9BYR6 98 aa5.83□□□□□ -1.48
PRPF38A-201ENST00000257181 NDUFAF8A1L188 74 aa5.82□□□□□ -1.48
PRPF38A-201ENST00000257181 VCANP13611 3396 aa5.82□□□□□ -1.48
PRPF38A-201ENST00000257181 KRTAP19-4Q3LI73 84 aa5.81□□□□□ -1.48
PRPF38A-201ENST00000257181 KRTAP8-1Q8IUC2 63 aa5.8□□□□□ -1.48
PRPF38A-201ENST00000257181 KRTAP3-2Q9BYR7 98 aa5.77□□□□□ -1.49
PRPF38A-201ENST00000257181 DYNC1H1Q14204 4646 aaKnown RBP5.76□□□□□ -1.49
PRPF38A-201ENST00000257181 DNAH6Q9C0G6 4158 aa5.75□□□□□ -1.49
PRPF38A-201ENST00000257181 CELSR3Q9NYQ7 3312 aa5.73□□□□□ -1.49
PRPF38A-201ENST00000257181 H3BS24 57 aa5.71□□□□□ -1.49
PRPF38A-201ENST00000257181 HERC1Q15751 4861 aa5.71□□□□□ -1.5
PRPF38A-201ENST00000257181 MEGF8Q7Z7M0 2845 aa5.7□□□□□ -1.5
PRPF38A-201ENST00000257181 LRP1BQ9NZR2 4599 aa5.68□□□□□ -1.5
PRPF38A-201ENST00000257181 KRTAP12-3P60328 96 aa5.68□□□□□ -1.5
PRPF38A-201ENST00000257181 SPRR2GQ9BYE4 73 aa5.66□□□□□ -1.5
PRPF38A-201ENST00000257181 MT2AP02795 61 aa5.65□□□□□ -1.51
PRPF38A-201ENST00000257181 VPS13DQ5THJ4 4388 aa5.64□□□□□ -1.51
PRPF38A-201ENST00000257181 DYNC2H1Q8NCM8 4307 aaKnown RBP5.64□□□□□ -1.51
PRPF38A-201ENST00000257181 LOC400499M0QZD8 3231 aa5.63□□□□□ -1.51
PRPF38A-201ENST00000257181 DNAH5Q8TE73 4624 aa5.63□□□□□ -1.51
PRPF38A-201ENST00000257181 CFAP47Q6ZTR5 3102 aa5.62□□□□□ -1.51
PRPF38A-201ENST00000257181 PLECQ15149 4684 aaKnown RBP5.61□□□□□ -1.51
PRPF38A-201ENST00000257181 MYCBP2O75592 4640 aa5.61□□□□□ -1.51
PRPF38A-201ENST00000257181 DNAH17Q9UFH2 4485 aa5.57□□□□□ -1.52
PRPF38A-201ENST00000257181 DNAH3Q8TD57 4116 aa5.56□□□□□ -1.52
PRPF38A-201ENST00000257181 KRTAP4-1Q9BYQ7 146 aa5.56□□□□□ -1.52
PRPF38A-201ENST00000257181 DNAH14Q0VDD8 3507 aa5.52□□□□□ -1.53
PRPF38A-201ENST00000257181 HSPG2P98160 4391 aa5.52□□□□□ -1.53
PRPF38A-201ENST00000257181 AKAP9Q99996 3911 aa5.51□□□□□ -1.53
PRPF38A-201ENST00000257181 FAT2Q9NYQ8 4349 aa5.5□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms