RNA–Protein interactions for RNA: ENST00000253251.12

UBE4B-201, Transcript of ubiquitination factor E4B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UBE4B, Length 4,772 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE4B-201ENST00000253251 DCHS2Q6V1P9 2916 aa8.55□□□□□ -1.04
UBE4B-201ENST00000253251 M0R2T5 61 aa8.52□□□□□ -1.05
UBE4B-201ENST00000253251 NOTCH2NLQ7Z3S9 236 aa8.52□□□□□ -1.05
UBE4B-201ENST00000253251 NF1P21359 2839 aa8.49□□□□□ -1.05
UBE4B-201ENST00000253251 FBN2P35556 2912 aa8.47□□□□□ -1.05
UBE4B-201ENST00000253251 Q5VV11 94 aa8.46□□□□□ -1.06
UBE4B-201ENST00000253251 DMBT1Q9UGM3 2413 aaPredicted RBP8.45□□□□□ -1.06
UBE4B-201ENST00000253251 SPEGQ15772 3267 aa8.45□□□□□ -1.06
UBE4B-201ENST00000253251 CRYBG3Q68DQ2 2970 aa8.44□□□□□ -1.06
UBE4B-201ENST00000253251 PDZD2O15018 2839 aa8.44□□□□□ -1.06
UBE4B-201ENST00000253251 ASH1LQ9NR48 2969 aaKnown RBP8.44□□□□□ -1.06
UBE4B-201ENST00000253251 MXRA5Q9NR99 2828 aa8.43□□□□□ -1.06
UBE4B-201ENST00000253251 CAMK2N1Q7Z7J9 78 aa8.42□□□□□ -1.06
UBE4B-201ENST00000253251 CFAP47Q6ZTR5 3102 aa8.41□□□□□ -1.06
UBE4B-201ENST00000253251 RPL37P61927 97 aaKnown RBP8.4□□□□□ -1.06
UBE4B-201ENST00000253251 R4GN34 69 aa8.39□□□□□ -1.07
UBE4B-201ENST00000253251 KRTAP1-4P0C5Y4 121 aa8.37□□□□□ -1.07
UBE4B-201ENST00000253251 H1FX-AS1Q4G0G2 97 aa8.36□□□□□ -1.07
UBE4B-201ENST00000253251 A8MUU9 505 aa8.35□□□□□ -1.07
UBE4B-201ENST00000253251 LUZP6Q538Z0 58 aa8.34□□□□□ -1.07
UBE4B-201ENST00000253251 C20orf166-AS1Q96NR2 134 aa8.33□□□□□ -1.08
UBE4B-201ENST00000253251 H3BS24 57 aa8.3□□□□□ -1.08
UBE4B-201ENST00000253251 MYO15AQ9UKN7 3530 aa8.25□□□□□ -1.09
UBE4B-201ENST00000253251 M0QZ58 72 aa8.23□□□□□ -1.09
UBE4B-201ENST00000253251 ADM2Q7Z4H4 148 aa8.22□□□□□ -1.09
UBE4B-201ENST00000253251 TENM3Q9P273 2699 aa8.21□□□□□ -1.1
UBE4B-201ENST00000253251 OTOGQ6ZRI0 2925 aa8.18□□□□□ -1.1
UBE4B-201ENST00000253251 SPATA8Q6RVD6 105 aa8.17□□□□□ -1.1
UBE4B-201ENST00000253251 A0A1B0GVY2 172 aa8.17□□□□□ -1.1
UBE4B-201ENST00000253251 CELSR1Q9NYQ6 3014 aa8.16□□□□□ -1.1
UBE4B-201ENST00000253251 FLG2Q5D862 2391 aaPredicted RBP8.15□□□□□ -1.1
UBE4B-201ENST00000253251 A0A0A0MQY5 61 aa8.14□□□□□ -1.11
UBE4B-201ENST00000253251 PRAC1Q96KF2 57 aa8.13□□□□□ -1.11
UBE4B-201ENST00000253251 RELNP78509 3460 aa8.13□□□□□ -1.11
UBE4B-201ENST00000253251 ROMO1P60602 79 aa8.12□□□□□ -1.11
UBE4B-201ENST00000253251 TENM1Q9UKZ4 2725 aa8.11□□□□□ -1.11
UBE4B-201ENST00000253251 TPRXLQ17RH7 258 aa8.11□□□□□ -1.11
UBE4B-201ENST00000253251 XP32Q5T750 250 aa8.1□□□□□ -1.11
UBE4B-201ENST00000253251 TENM2Q9NT68 2774 aa8.08□□□□□ -1.12
UBE4B-201ENST00000253251 PLAC4Q8WY50 150 aa8.07□□□□□ -1.12
UBE4B-201ENST00000253251 DCHS1Q96JQ0 3298 aa8.05□□□□□ -1.12
UBE4B-201ENST00000253251 KRTAP16-1A8MUX0 517 aa8.05□□□□□ -1.12
UBE4B-201ENST00000253251 MUC3AQ02505 3323 aa8.01□□□□□ -1.13
UBE4B-201ENST00000253251 KRTAP10-8P60410 259 aa8□□□□□ -1.13
UBE4B-201ENST00000253251 KRTAP13-3Q3SY46 172 aa7.96□□□□□ -1.13
UBE4B-201ENST00000253251 ANK3Q12955 4377 aaKnown RBP7.96□□□□□ -1.14
UBE4B-201ENST00000253251 LAMA5O15230 3695 aa7.93□□□□□ -1.14
UBE4B-201ENST00000253251 A6NN06 94 aa7.9□□□□□ -1.15
UBE4B-201ENST00000253251 VWFP04275 2813 aa7.89□□□□□ -1.15
UBE4B-201ENST00000253251 WDFY3Q8IZQ1 3526 aa7.89□□□□□ -1.15
UBE4B-201ENST00000253251 DMDP11532 3685 aa7.86□□□□□ -1.15
UBE4B-201ENST00000253251 TGP01266 2768 aa7.85□□□□□ -1.15
UBE4B-201ENST00000253251 A8MU10 97 aa7.84□□□□□ -1.15
UBE4B-201ENST00000253251 FBN1P35555 2871 aaKnown RBP7.82□□□□□ -1.16
UBE4B-201ENST00000253251 NBPF19A0A087WUL8 3843 aa7.81□□□□□ -1.16
UBE4B-201ENST00000253251 ASPMQ8IZT6 3477 aa7.79□□□□□ -1.16
UBE4B-201ENST00000253251 PKD1L1Q8TDX9 2849 aa7.77□□□□□ -1.17
UBE4B-201ENST00000253251 KRTAP25-1Q3LHN0 102 aa7.74□□□□□ -1.17
UBE4B-201ENST00000253251 ZFHX4Q86UP3 3567 aa7.73□□□□□ -1.17
UBE4B-201ENST00000253251 TNP1P09430 55 aa7.65□□□□□ -1.19
UBE4B-201ENST00000253251 BSNQ9UPA5 3926 aa7.59□□□□□ -1.19
UBE4B-201ENST00000253251 ZFHX3Q15911 3703 aa7.57□□□□□ -1.2
UBE4B-201ENST00000253251 SMG1Q96Q15 3661 aaKnown RBP7.57□□□□□ -1.2
UBE4B-201ENST00000253251 H0YAA0 97 aa7.55□□□□□ -1.2
UBE4B-201ENST00000253251 PP632Q6XCG6 107 aa7.53□□□□□ -1.2
UBE4B-201ENST00000253251 FBN3Q75N90 2809 aa7.5□□□□□ -1.21
UBE4B-201ENST00000253251 SPENQ96T58 3664 aaKnown RBP7.48□□□□□ -1.21
UBE4B-201ENST00000253251 NDUFAF8A1L188 74 aa7.47□□□□□ -1.21
UBE4B-201ENST00000253251 KRTAP10-10P60014 251 aa7.47□□□□□ -1.21
UBE4B-201ENST00000253251 P0C880 135 aa7.46□□□□□ -1.22
UBE4B-201ENST00000253251 CSMD1Q96PZ7 3565 aa7.45□□□□□ -1.22
UBE4B-201ENST00000253251 TRRAPQ9Y4A5 3859 aa7.43□□□□□ -1.22
UBE4B-201ENST00000253251 MEGF8Q7Z7M0 2845 aa7.42□□□□□ -1.22
UBE4B-201ENST00000253251 MT1HL1P0DM35 61 aa7.42□□□□□ -1.22
UBE4B-201ENST00000253251 KRTAP10-4P60372 401 aaPredicted RBP7.41□□□□□ -1.22
UBE4B-201ENST00000253251 CSMD2Q7Z408 3487 aa7.4□□□□□ -1.23
UBE4B-201ENST00000253251 HUWE1Q7Z6Z7 4374 aaKnown RBP7.39□□□□□ -1.23
UBE4B-201ENST00000253251 PRO2289Q9P1D8 64 aa7.37□□□□□ -1.23
UBE4B-201ENST00000253251 KRTAP3-1Q9BYR8 98 aa7.34□□□□□ -1.23
UBE4B-201ENST00000253251 SVEP1Q4LDE5 3571 aa7.28□□□□□ -1.24
UBE4B-201ENST00000253251 ALMS1Q8TCU4 4167 aa7.27□□□□□ -1.25
UBE4B-201ENST00000253251 C10orf95Q9H7T3 257 aa7.17□□□□□ -1.26
UBE4B-201ENST00000253251 DNAH9Q9NYC9 4486 aa7.16□□□□□ -1.26
UBE4B-201ENST00000253251 CUBNO60494 3623 aa7.14□□□□□ -1.27
UBE4B-201ENST00000253251 SRRM2Q9UQ35 2752 aaKnown RBP7.11□□□□□ -1.27
UBE4B-201ENST00000253251 AKAP9Q99996 3911 aa7.1□□□□□ -1.27
UBE4B-201ENST00000253251 KRTAP12-1P59990 96 aa7.1□□□□□ -1.27
UBE4B-201ENST00000253251 KRTAP12-2P59991 146 aa7.1□□□□□ -1.27
UBE4B-201ENST00000253251 COL7A1Q02388 2944 aa7.09□□□□□ -1.27
UBE4B-201ENST00000253251 KRTAP10-6P60371 365 aaPredicted RBP7.08□□□□□ -1.28
UBE4B-201ENST00000253251 KRTAP4-5Q9BYR2 181 aa7.07□□□□□ -1.28
UBE4B-201ENST00000253251 KRTAP13-4Q3LI77 160 aa7.06□□□□□ -1.28
UBE4B-201ENST00000253251 VPS13CQ709C8 3753 aa6.97□□□□□ -1.29
UBE4B-201ENST00000253251 ZNF469Q96JG9 3925 aaPredicted RBP6.96□□□□□ -1.3
UBE4B-201ENST00000253251 KRTAP3-3Q9BYR6 98 aa6.95□□□□□ -1.3
UBE4B-201ENST00000253251 DNAH10Q8IVF4 4471 aa6.92□□□□□ -1.3
UBE4B-201ENST00000253251 KRTAP3-2Q9BYR7 98 aa6.89□□□□□ -1.31
UBE4B-201ENST00000253251 DNAH5Q8TE73 4624 aa6.88□□□□□ -1.31
UBE4B-201ENST00000253251 VPS13DQ5THJ4 4388 aa6.88□□□□□ -1.31
UBE4B-201ENST00000253251 DNAH11Q96DT5 4516 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms