RNA–Protein interactions for RNA: ENST00000243082.4

HOXC11-201, Transcript of homeobox C11, humanhuman

TSL 3 BASIC

Gene HOXC11, Length 2,039 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-201ENST00000243082 RPS28P62857 69 aaKnown RBP10.71□□□□□ -0.69
HOXC11-201ENST00000243082 APOBP04114 4563 aaKnown RBP10.71□□□□□ -0.7
HOXC11-201ENST00000243082 NOTCH2NLQ7Z3S9 236 aa10.7□□□□□ -0.7
HOXC11-201ENST00000243082 Q5XG85 94 aa10.68□□□□□ -0.7
HOXC11-201ENST00000243082 MP68P56378 58 aa10.65□□□□□ -0.7
HOXC11-201ENST00000243082 H0Y9P7 68 aa10.64□□□□□ -0.71
HOXC11-201ENST00000243082 TYMSOSQ8TAI1 123 aa10.63□□□□□ -0.71
HOXC11-201ENST00000243082 OXTP01178 125 aa10.63□□□□□ -0.71
HOXC11-201ENST00000243082 KRTAP10-4P60372 401 aaPredicted RBP10.63□□□□□ -0.71
HOXC11-201ENST00000243082 C1orf195Q5TG92 126 aa10.63□□□□□ -0.71
HOXC11-201ENST00000243082 MRPL34Q9BQ48 92 aaKnown RBP10.62□□□□□ -0.71
HOXC11-201ENST00000243082 FAT1Q14517 4588 aa10.62□□□□□ -0.71
HOXC11-201ENST00000243082 LINC00208Q96KT6 92 aa10.62□□□□□ -0.71
HOXC11-201ENST00000243082 ATP5EP56381 51 aaPredicted RBP10.61□□□□□ -0.71
HOXC11-201ENST00000243082 TP53AIP1Q9HCN2 124 aa10.6□□□□□ -0.71
HOXC11-201ENST00000243082 H3BPC8 53 aa10.59□□□□□ -0.71
HOXC11-201ENST00000243082 TRAV22A0A0B4J277 110 aa10.58□□□□□ -0.72
HOXC11-201ENST00000243082 PRR26Q8N8Z3 221 aa10.58□□□□□ -0.72
HOXC11-201ENST00000243082 C4orf48Q5BLP8 95 aa10.58□□□□□ -0.72
HOXC11-201ENST00000243082 LIMD2Q9BT23 127 aa10.58□□□□□ -0.72
HOXC11-201ENST00000243082 SERP1Q9Y6X1 66 aa10.58□□□□□ -0.72
HOXC11-201ENST00000243082 NDUFS5O43920 106 aa10.56□□□□□ -0.72
HOXC11-201ENST00000243082 C8orf87E5RJ46 101 aa10.55□□□□□ -0.72
HOXC11-201ENST00000243082 SPINK1P00995 79 aa10.55□□□□□ -0.72
HOXC11-201ENST00000243082 C1orf64Q8NEQ6 169 aa10.54□□□□□ -0.72
HOXC11-201ENST00000243082 LINC00313P59037 77 aa10.51□□□□□ -0.73
HOXC11-201ENST00000243082 RYR3Q15413 4870 aa10.5□□□□□ -0.73
HOXC11-201ENST00000243082 LINC00304Q8N9R0 145 aa10.5□□□□□ -0.73
HOXC11-201ENST00000243082 RPS29P62273 56 aaKnown RBP10.46□□□□□ -0.74
HOXC11-201ENST00000243082 SPAG11AQ6PDA7 123 aa10.45□□□□□ -0.74
HOXC11-201ENST00000243082 PKHD1L1Q86WI1 4243 aa10.44□□□□□ -0.74
HOXC11-201ENST00000243082 Q5W150 140 aa10.43□□□□□ -0.74
HOXC11-201ENST00000243082 KRTAP13-3Q3SY46 172 aa10.43□□□□□ -0.74
HOXC11-201ENST00000243082 CYP4F30PQ9H0H9 118 aa10.43□□□□□ -0.74
HOXC11-201ENST00000243082 KRTAP16-1A8MUX0 517 aa10.42□□□□□ -0.74
HOXC11-201ENST00000243082 PRR4Q16378 134 aa10.42□□□□□ -0.74
HOXC11-201ENST00000243082 Q8N9P0 234 aaPredicted RBP10.42□□□□□ -0.74
HOXC11-201ENST00000243082 SPANXA2-OT1Q8N9U9 137 aa10.41□□□□□ -0.74
HOXC11-201ENST00000243082 HSPG2P98160 4391 aa10.37□□□□□ -0.75
HOXC11-201ENST00000243082 FAM229AH3BQW9 127 aa10.36□□□□□ -0.75
HOXC11-201ENST00000243082 PCOTHQ58A44 107 aa10.36□□□□□ -0.75
HOXC11-201ENST00000243082 SMIM26A0A096LP01 95 aa10.34□□□□□ -0.75
HOXC11-201ENST00000243082 LOC101927531A0A1B0GV80 90 aa10.33□□□□□ -0.76
HOXC11-201ENST00000243082 IGLV7-46A0A075B6I9 117 aa10.32□□□□□ -0.76
HOXC11-201ENST00000243082 FP248Q71RG6 208 aaPredicted RBP10.32□□□□□ -0.76
HOXC11-201ENST00000243082 RYR1P21817 5038 aa10.3□□□□□ -0.76
HOXC11-201ENST00000243082 Q5VSD8 79 aa10.29□□□□□ -0.76
HOXC11-201ENST00000243082 RETNLBQ9BQ08 111 aa10.28□□□□□ -0.76
HOXC11-201ENST00000243082 C4orf26Q17RF5 130 aa10.25□□□□□ -0.77
HOXC11-201ENST00000243082 KRTAP17-1Q9BYP8 105 aa10.24□□□□□ -0.77
HOXC11-201ENST00000243082 LRP1Q07954 4544 aaKnown RBP10.23□□□□□ -0.77
HOXC11-201ENST00000243082 TNXBP22105 4242 aa10.21□□□□□ -0.77
HOXC11-201ENST00000243082 KRTAP10-8P60410 259 aa10.21□□□□□ -0.78
HOXC11-201ENST00000243082 IGKV2-30P06310 120 aa10.19□□□□□ -0.78
HOXC11-201ENST00000243082 Q8N1X5 172 aa10.19□□□□□ -0.78
HOXC11-201ENST00000243082 FLG2Q5D862 2391 aaPredicted RBP10.18□□□□□ -0.78
HOXC11-201ENST00000243082 MPLKIPQ8TAP9 179 aa10.16□□□□□ -0.78
HOXC11-201ENST00000243082 KIAA1109Q2LD37 5005 aa10.16□□□□□ -0.78
HOXC11-201ENST00000243082 C9orf92A6NGG3 77 aa10.14□□□□□ -0.79
HOXC11-201ENST00000243082 COA5Q86WW8 74 aa10.14□□□□□ -0.79
HOXC11-201ENST00000243082 HRES1P13985 223 aa10.12□□□□□ -0.79
HOXC11-201ENST00000243082 FAT3Q8TDW7 4589 aa10.12□□□□□ -0.79
HOXC11-201ENST00000243082 EPPK1P58107 5090 aaKnown RBP10.11□□□□□ -0.79
HOXC11-201ENST00000243082 C20orf166-AS1Q96NR2 134 aa10.09□□□□□ -0.79
HOXC11-201ENST00000243082 IGKV2D-30A0A075B6S6 120 aa10.09□□□□□ -0.79
HOXC11-201ENST00000243082 A8MUU9 505 aa10.09□□□□□ -0.79
HOXC11-201ENST00000243082 Q1T7F1 81 aa10.08□□□□□ -0.8
HOXC11-201ENST00000243082 DMAC1Q96GE9 116 aa10.02□□□□□ -0.81
HOXC11-201ENST00000243082 MYCBP2O75592 4640 aa9.99□□□□□ -0.81
HOXC11-201ENST00000243082 MT1HL1P0DM35 61 aa9.99□□□□□ -0.81
HOXC11-201ENST00000243082 ACYP2P14621 99 aa9.99□□□□□ -0.81
HOXC11-201ENST00000243082 C7orf65Q6ZTY9 151 aa9.98□□□□□ -0.81
HOXC11-201ENST00000243082 DMBT1Q9UGM3 2413 aaPredicted RBP9.96□□□□□ -0.81
HOXC11-201ENST00000243082 V9GYY9 64 aa9.95□□□□□ -0.82
HOXC11-201ENST00000243082 Q75L30 129 aa9.94□□□□□ -0.82
HOXC11-201ENST00000243082 PSPHP1O15172 72 aa9.92□□□□□ -0.82
HOXC11-201ENST00000243082 A8MUN3 132 aa9.88□□□□□ -0.83
HOXC11-201ENST00000243082 KRTAP4-5Q9BYR2 181 aa9.83□□□□□ -0.84
HOXC11-201ENST00000243082 CHKB-CPT1BH3BT56 60 aa9.83□□□□□ -0.84
HOXC11-201ENST00000243082 SPINK7P58062 85 aa9.83□□□□□ -0.84
HOXC11-201ENST00000243082 LINC01558Q9Y6Z2 57 aa9.83□□□□□ -0.84
HOXC11-201ENST00000243082 Q5VV11 94 aa9.82□□□□□ -0.84
HOXC11-201ENST00000243082 PRR15LQ9BU68 103 aa9.81□□□□□ -0.84
HOXC11-201ENST00000243082 XP32Q5T750 250 aa9.79□□□□□ -0.84
HOXC11-201ENST00000243082 RPL37P61927 97 aaKnown RBP9.77□□□□□ -0.85
HOXC11-201ENST00000243082 ATP11AUNQ6ZP68 121 aa9.76□□□□□ -0.85
HOXC11-201ENST00000243082 BRK1Q8WUW1 75 aa9.75□□□□□ -0.85
HOXC11-201ENST00000243082 KRTAP3-1Q9BYR8 98 aa9.72□□□□□ -0.85
HOXC11-201ENST00000243082 PRO0628Q9UI54 55 aa9.69□□□□□ -0.86
HOXC11-201ENST00000243082 ABCA13Q86UQ4 5058 aa9.63□□□□□ -0.87
HOXC11-201ENST00000243082 TPRXLQ17RH7 258 aa9.62□□□□□ -0.87
HOXC11-201ENST00000243082 COX6B2Q6YFQ2 88 aa9.61□□□□□ -0.87
HOXC11-201ENST00000243082 A6NED7 52 aa9.57□□□□□ -0.88
HOXC11-201ENST00000243082 J3QL48 77 aa9.56□□□□□ -0.88
HOXC11-201ENST00000243082 A0A1B0GU69 56 aa9.55□□□□□ -0.88
HOXC11-201ENST00000243082 A8MU10 97 aa9.55□□□□□ -0.88
HOXC11-201ENST00000243082 BIRC6Q9NR09 4857 aa9.55□□□□□ -0.88
HOXC11-201ENST00000243082 HERC2O95714 4834 aa9.54□□□□□ -0.88
HOXC11-201ENST00000243082 LRP2P98164 4655 aa9.53□□□□□ -0.88
HOXC11-201ENST00000243082 LCA10Q71F78 164 aa9.51□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms